mRNA_Ecto-sp13_S_contig6396.17154.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig6396.17154.1 vs. uniprot
Match: D7FKQ2_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKQ2_ECTSI) HSP 1 Score: 753 bits (1943), Expect = 1.390e-266 Identity = 388/420 (92.38%), Postives = 395/420 (94.05%), Query Frame = 1
Query: 1 RAEFDADLKQLAKNLGIEALSTTRAMFDLFDDGRGGILHIQDLAAGLTVLCDASMAQFVQYACRLYRGPDGDSAFDDVFGLTLSILKVLHASGPADWPWPGMLPHEVSAVVSSEFFLRKGLPLSGRVTIDWSAFAILEETERSSETADGGCWGHLLQGLRKYDMTVVLGLLSAFVDQSGGVSRPAFVGCMRALFEEDGRCVLSAAETMELKISLTRLYQVLDGDRVGTVAFRDLARFVRAPVTSAMGVREIRSMKGAKSLHNLGTVACCVRVSLIPFLRYCCGLASPRPLAEESRTAAATERRDLDVNDEGIERNVDLHAPLHSKAHPSTSTAANSNEASWTEPDELRSELEKLAEGSANGSSSKEDIGEEGRPCKGALDEVESPLSESLEQARRVTRLCNTSVAQVVVVLKDFVNGGGR 1260
RAEFDADLK LAKNLGIEALSTTRA+F LFDDGRGGILHIQDLAAGLTVLCDASMAQFVQ ACRLYRGPDGDS FDDVFGLTLSILKVLHASG ADWPWPGMLPHEVSAVVSS+FFLRKGLPLSGRVTIDWSAFA LEETERSSETA GGCWGHLLQGLRKYD+TVVLGLLSAFVDQSGG+SRPAFVGCMRALFEEDG CVLSAAETMELKISLTRLYQVLDGDR+ TVAFRDLARFVRAPVTS GVREIRSM A+SLHNLG VACCVRVSL PFLR+CCGLAS RPL EESRTAAATERRDLDVNDE IERNVDLHA LHSKAHPSTSTAANSNEASWTEPDELR ELEKLAE SANGSSSKED G EGRPCKG LDEVESPLSESLEQARRVTRLCNTSVAQVVVVLKDFVN GGR
Sbjct: 15 RAEFDADLKHLAKNLGIEALSTTRAIFGLFDDGRGGILHIQDLAAGLTVLCDASMAQFVQCACRLYRGPDGDSGFDDVFGLTLSILKVLHASGRADWPWPGMLPHEVSAVVSSDFFLRKGLPLSGRVTIDWSAFAALEETERSSETAGGGCWGHLLQGLRKYDITVVLGLLSAFVDQSGGISRPAFVGCMRALFEEDGCCVLSAAETMELKISLTRLYQVLDGDRMETVAFRDLARFVRAPVTS--GVREIRSMNWAESLHNLGAVACCVRVSLTPFLRFCCGLASSRPLMEESRTAAATERRDLDVNDERIERNVDLHARLHSKAHPSTSTAANSNEASWTEPDELRGELEKLAERSANGSSSKEDTGGEGRPCKGTLDEVESPLSESLEQARRVTRLCNTSVAQVVVVLKDFVNDGGR 432
BLAST of mRNA_Ecto-sp13_S_contig6396.17154.1 vs. uniprot
Match: A0A6H5KH67_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH67_9PHAE) HSP 1 Score: 670 bits (1729), Expect = 2.800e-233 Identity = 368/496 (74.19%), Postives = 375/496 (75.60%), Query Frame = 1
Query: 76 MFDLFDDGRGGILHIQDLAAGLTVLCDASMAQFVQYACRLYRGPDGDSAFDDVFGLTLSILKVLHASGPADWPWPGMLPHEVSAVVSSEFFLRKGLPLSGRVTIDWSAFAILEETERSSETADGGCWGHLLQGLRKYDMTVVLGLLSAFVDQSGGVSRPAFVGCMRALFEEDGRCVLSAAETMELKISLTRLYQVLDGDRVGTVAFRDLA----------------------------------------------------------------------------------------------------RFVRAPVTSAMGVREIRSMKGAKSLHNLGTVACCVRVSLIPFLRYCCGLASPRPLAEESRTAAATERRDLDVNDEGIERNVD-LHAPLHSKAHPSTSTAANSNEASWTEPDELRSELEKLAEGSANGSSSKEDIGEEGRPCKGALDEVESPLSESLEQARRVTRLCNTSVAQVVVVLKDFVNGGGR 1260
MFDLFDDGRGGILHIQDLAAGLTVLCDASMAQFVQ ACRLYRGPDGDS FDDVFGLTLSILKVLHASG ADWPWPGMLP EVSAVVSSEFFLRKGLPLSGRVTIDWSA AILEETERSSETADGGCWGHLLQGLRKYD+TVVLGLLSAFVDQSGG+SRPAFVGCMRALFEEDGRCVLSAAETMELKISLTRLYQVLDGDR+GTVA RDLA RFV APVTSAMGVRE+RSMKGAKSLHN G VACCVRVSLIPFLRYCCGLAS RPL EESRTAAATERRDLDVNDEGIERNV LHA LHSKAHPSTSTAANS+EASWTEPDELR LEKLAEGSANGSSSKE+ G EGRPCKG LDEVESPLSESLEQARRVTRLCNTSVAQVV VL+DFVN GGR
Sbjct: 1 MFDLFDDGRGGILHIQDLAAGLTVLCDASMAQFVQCACRLYRGPDGDSGFDDVFGLTLSILKVLHASGTADWPWPGMLPQEVSAVVSSEFFLRKGLPLSGRVTIDWSAVAILEETERSSETADGGCWGHLLQGLRKYDVTVVLGLLSAFVDQSGGISRPAFVGCMRALFEEDGRCVLSAAETMELKISLTRLYQVLDGDRMGTVAPRDLASGISLFCGNINNASVRAMFEVYGTVEGSIARDCMRKFLQAVFKVLFHVDPGARVLAGNDPRGERVDPAYLAETATAHAFEDAVLNPDGTLGSEKFHHWYSRFVGAPVTSAMGVRELRSMKGAKSLHN-GAVACCVRVSLIPFLRYCCGLASSRPLMEESRTAAATERRDLDVNDEGIERNVGGLHAQLHSKAHPSTSTAANSDEASWTEPDELRGGLEKLAEGSANGSSSKENTGGEGRPCKGILDEVESPLSESLEQARRVTRLCNTSVAQVVAVLQDFVNEGGR 495
BLAST of mRNA_Ecto-sp13_S_contig6396.17154.1 vs. uniprot
Match: A0A3M6VB29_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VB29_9STRA) HSP 1 Score: 66.2 bits (160), Expect = 7.640e-8 Identity = 57/258 (22.09%), Postives = 106/258 (41.09%), Query Frame = 1
Query: 25 KQLAKNLGIEALSTTRAMFDLFDDGRGGILHIQDLAAGLTVLCDASMAQFVQYACRLYR-GPDGDSAFDDVFGLTLSILKVLHASGPADWPWPGMLPHEVSAVVSSEFFLRKGLPLSGRVTID----W------------------SAFAILEETERSSETADGGCW---------GHLLQGLRKYDMTVVLGLLSAFVDQSGGVSRPAFVGCMRALFEEDGRCVLSAAETMELKISLTRLYQVLDGDRVGTVAFRDL 702
+Q++ + I + +++LFD + GI+ +Q+L AGL++LC S A + LY DG + +++ S+ KV+ + P GM+P +++A+ + E F + G++++D W S ++ E SS ++ L GL + V L S +D + R F C +LS +E+ + + R+Y D ++ G V F +L
Sbjct: 825 RQISLDTQINTQQLLKQLYELFDADKDGIVDVQELGAGLSILCGGSRADRAKAMFTLYDDNHDGCISPEEMTSYLSSVFKVMFTASPDLLSKTGMMPAQLAAITTRECFRGFDVNRDGQLSVDEFRVWFEQQNPYAFYKRACVSNGSKASLPSELIHSSSSSSSEPTTADIIPINVAKKLSGLENMSLDDVSELFSLAIDGGNRILRRIFDKCFYKHICSKNTSMLSESESTRVHEVIDRIYSAFDTEQKGIVGFNEL 1082
BLAST of mRNA_Ecto-sp13_S_contig6396.17154.1 vs. uniprot
Match: A0A662WUA9_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WUA9_9STRA) HSP 1 Score: 63.9 bits (154), Expect = 4.000e-7 Identity = 57/254 (22.44%), Postives = 105/254 (41.34%), Query Frame = 1
Query: 28 QLAKNLGIEALSTTRAMFDLFDDGRGGILHIQDLAAGLTVLCDASMAQFVQYACRLYR-GPDGDSAFDDVFGLTLSILKVLHASGPADWPWPGMLPHEVSAVVSSEFFLRKGLPLSGRVTID----W---------------------SAFAILEETERSSETADGGC---WGHLLQGLRKYDMTVVLGLLSAFVDQSGGVSRPAFVGCMRALFEEDGRCVLSAAETMELKISLTRLYQVLDGDRVGTVAFRDL 702
++++++ ++ + +F+LFD R G++ +Q+L AGL++LC S + LY DG + +++ SI +V+ + P GM P +++ V ++E F G+++ + W S+ A E S A G L GL+ + V L ++ V+ +SR F C + +SA E+ + + RL+ D D G V F +L
Sbjct: 874 RVSRDMQMKTQQLLKELFELFDSDRNGLVDVQELGAGLSILCGGSRDDKAKSMFTLYDVNQDGYISPEEMVSYLTSIFRVMFKASPDLPVKTGMTPEQLAKVTTAECFHAFDHNRDGQLSFEEFRRWFDQQNPRIQHQQTVNGHGESSSSVAGAASLESSEAVASGVIPIEVAKKLSGLKDMPLEKVSELFASAVNGGDQISRRVFDECFYKYISGNSAAKMSAEESTRVHEVIDRLFTAFDTDLNGVVDFNEL 1127
BLAST of mRNA_Ecto-sp13_S_contig6396.17154.1 vs. uniprot
Match: K3WY98_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WY98_GLOUD) HSP 1 Score: 58.9 bits (141), Expect = 1.480e-5 Identity = 56/240 (23.33%), Postives = 92/240 (38.33%), Query Frame = 1
Query: 76 MFDLFDDGRGGILHIQDLAAGLTVLCDASMAQFVQYACRLYR-GPDGDSAFDDVFGLTLSILKVLHASGPADWPWPGMLPHEVSAVVSSEFFL----RKGLPLSGRVTIDWS------AFAILEETERSSETADGGCWGHL-------------------LQGLRKYDMTVVLGLLSAFVDQSGGVSRPAFVGCMRALFEEDGRCVLSAAETMELKISLTRLYQVLDGDRVGTVAFRDLA 705
+F LFD R G + +Q+L AGL+VLC S+ + RLY DG + +++ + KVL+ + P G+ E++ + E F + LS +W A A + S+++ L GL+ + V L S D+ G ++R AF C LS ++ + + RL+ D D G V F +L+
Sbjct: 219 LFVLFDTDRNGTIDVQELGAGLSVLCGGSLEDKARSLFRLYDLNKDGFISPEEMDSYLTGVFKVLYKASPQLESQTGLTSRELATATTQECFQAFDRNRDRQLSFEEFREWLSHHNPLATASPQAQAPSAQSTSSNAVNERSPIQGEATIDVIPIEVAKKLSGLKDIALDKVTELFSTAADKEGRIARQAFDSCFYKYLCSASSAQLSPEDSNRVHEVIDRLFTAFDTDENGFVDFNELS 458
BLAST of mRNA_Ecto-sp13_S_contig6396.17154.1 vs. uniprot
Match: H3GGD8_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GGD8_PHYRM) HSP 1 Score: 57.8 bits (138), Expect = 3.540e-5 Identity = 52/241 (21.58%), Postives = 97/241 (40.25%), Query Frame = 1
Query: 70 RAMFDLFDDGRGGILHIQDLAAGLTVLCDASMAQFVQYACRLYR-GPDGDSAFDDVFGLTLSILKVLHASGPADWPWPGMLPHEVSAVVSSEFFLRKGLPLSGRVTID----W------------------SAFAILEETERSSETADGGCWGHL-------LQGLRKYDMTVVLGLLSAFVDQSGGVSRPAFVGCMRALFEEDGRCVLSAAETMELKISLTRLYQVLDGDRVGTVAFRDL 702
+ +F+LFD + G++ +Q+L AGL++LC S + + LY DG + +++ S+ KV+ + P GM+P +++ + + E F G+++ D W ++ SS++++ G + L GL + V L ++ +SR F C LS E+ + + RL+ D D+ G V F +L
Sbjct: 806 KELFELFDADKNGVVDVQELGAGLSILCGGSRSDKAKSMFTLYDVNHDGYISPEEMSSYLTSVFKVMFKASPELPAKTGMMPEQLAKITTRECFRAFDHNRDGQLSFDEFRVWFEQQNPHNQRPQTANGRRNSLPSAPAASPSSDSSEANTPGVISIEVAKKLSGLEGVSLDEVSELFASATGGGNRISRRIFDECFYKHICTKATPSLSVEESTRVHEVIDRLFTAFDTDQKGIVDFNEL 1046
BLAST of mRNA_Ecto-sp13_S_contig6396.17154.1 vs. uniprot
Match: M4BSL2_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BSL2_HYAAE) HSP 1 Score: 57.4 bits (137), Expect = 4.660e-5 Identity = 29/108 (26.85%), Postives = 57/108 (52.78%), Query Frame = 1
Query: 28 QLAKNLGIEALSTTRAMFDLFDDGRGGILHIQDLAAGLTVLCDASMAQFVQYACRLYR-GPDGDSAFDDVFGLTLSILKVLHASGPADWPWPGMLPHEVSAVVSSEFF 348
Q+++++ I+ +F+LFD + G++ +Q+L AGL++LC S A LY DG + D++ S+ K++ + P GM+P +++ + + E F
Sbjct: 807 QISRDMQIKTQQLLEEIFELFDGNKNGLVDVQELGAGLSILCGGSRADKTNAMFTLYDVNHDGYVSPDEMTSYLTSVFKIMFKASPELLTKTGMVPDQLARMTTRECF 914
BLAST of mRNA_Ecto-sp13_S_contig6396.17154.1 vs. uniprot
Match: W2ZEK2_PHYPR (Uncharacterized protein n=1 Tax=Phytophthora parasitica P10297 TaxID=1317064 RepID=W2ZEK2_PHYPR) HSP 1 Score: 57.4 bits (137), Expect = 4.670e-5 Identity = 55/243 (22.63%), Postives = 95/243 (39.09%), Query Frame = 1
Query: 70 RAMFDLFDDGRGGILHIQDLAAGLTVLCDASMAQFVQYACRLYR-GPDGDSAFDDVFGLTLSILKVLHASGPADWPWPGMLPHEVSAVVSSEFFLRKGLPLSGRVTIDWSAFAILEE------------------------TERSSETADGGCWGHL-------LQGLRKYDMTVVLGLLSAFVDQSGGVSRPAFVGCMRALFEEDGRCVLSAAETMELKISLTRLYQVLDGDRVGTVAFRDL 702
+ +F+LFD + G++ +Q+L AGL++LC S A + LY DG + +++ S+ KV+ + P GM P +++ + E F G+++ D F + E T SS ++D G + L GL + V + SA +SR F C LS ++ + + RL+ D ++ G V F +L
Sbjct: 848 KELFELFDADKNGVVDVQELGAGLSILCGGSRADKAKSMFTLYDVNHDGYISPEEMTSYLTSVFKVMFKASPELPAKTGMTPEQLAKTTTRECFRAFDHNRDGQLSFD--EFRVWFEQQNPHTQRPQVSNGNSGSRPSAPATTSSSGSSDADASGVIPIEVAKKLSGLEGMSLDEVSEIFSAATGGGKRISRRIFDECFYKHICSKATLGLSVEDSTRVHEVINRLFTAFDSEQKGIVDFNEL 1088
BLAST of mRNA_Ecto-sp13_S_contig6396.17154.1 vs. uniprot
Match: W2ZBH8_PHYPR (Uncharacterized protein n=1 Tax=Phytophthora parasitica P10297 TaxID=1317064 RepID=W2ZBH8_PHYPR) HSP 1 Score: 57.4 bits (137), Expect = 4.670e-5 Identity = 55/243 (22.63%), Postives = 95/243 (39.09%), Query Frame = 1
Query: 70 RAMFDLFDDGRGGILHIQDLAAGLTVLCDASMAQFVQYACRLYR-GPDGDSAFDDVFGLTLSILKVLHASGPADWPWPGMLPHEVSAVVSSEFFLRKGLPLSGRVTIDWSAFAILEE------------------------TERSSETADGGCWGHL-------LQGLRKYDMTVVLGLLSAFVDQSGGVSRPAFVGCMRALFEEDGRCVLSAAETMELKISLTRLYQVLDGDRVGTVAFRDL 702
+ +F+LFD + G++ +Q+L AGL++LC S A + LY DG + +++ S+ KV+ + P GM P +++ + E F G+++ D F + E T SS ++D G + L GL + V + SA +SR F C LS ++ + + RL+ D ++ G V F +L
Sbjct: 848 KELFELFDADKNGVVDVQELGAGLSILCGGSRADKAKSMFTLYDVNHDGYISPEEMTSYLTSVFKVMFKASPELPAKTGMTPEQLAKTTTRECFRAFDHNRDGQLSFD--EFRVWFEQQNPHTQRPQVSNGNSGSRPSAPATTSSSGSSDADASGVIPIEVAKKLSGLEGMSLDEVSEIFSAATGGGKRISRRIFDECFYKHICSKATLGLSVEDSTRVHEVINRLFTAFDSEQKGIVDFNEL 1088
BLAST of mRNA_Ecto-sp13_S_contig6396.17154.1 vs. uniprot
Match: W2Q9D3_PHYPN (Uncharacterized protein n=19 Tax=Phytophthora TaxID=4783 RepID=W2Q9D3_PHYPN) HSP 1 Score: 57.4 bits (137), Expect = 4.670e-5 Identity = 55/243 (22.63%), Postives = 95/243 (39.09%), Query Frame = 1
Query: 70 RAMFDLFDDGRGGILHIQDLAAGLTVLCDASMAQFVQYACRLYR-GPDGDSAFDDVFGLTLSILKVLHASGPADWPWPGMLPHEVSAVVSSEFFLRKGLPLSGRVTIDWSAFAILEE------------------------TERSSETADGGCWGHL-------LQGLRKYDMTVVLGLLSAFVDQSGGVSRPAFVGCMRALFEEDGRCVLSAAETMELKISLTRLYQVLDGDRVGTVAFRDL 702
+ +F+LFD + G++ +Q+L AGL++LC S A + LY DG + +++ S+ KV+ + P GM P +++ + E F G+++ D F + E T SS ++D G + L GL + V + SA +SR F C LS ++ + + RL+ D ++ G V F +L
Sbjct: 853 KELFELFDADKNGVVDVQELGAGLSILCGGSRADKAKSMFTLYDVNHDGYISPEEMTSYLTSVFKVMFKASPELPAKTGMTPEQLAKTTTRECFRAFDHNRDGQLSFD--EFRVWFEQQNPHTQRPQVSNGNSGSRPSAPATTSSSGSSDADASGVIPIEVAKKLSGLEGMSLDEVSEIFSAATGGGKRISRRIFDECFYKHICSKATLGLSVEDSTRVHEVINRLFTAFDSEQKGIVDFNEL 1093 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6396.17154.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig6396.17154.1 >prot_Ecto-sp13_S_contig6396.17154.1 ID=prot_Ecto-sp13_S_contig6396.17154.1|Name=mRNA_Ecto-sp13_S_contig6396.17154.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=420bp RAEFDADLKQLAKNLGIEALSTTRAMFDLFDDGRGGILHIQDLAAGLTVLback to top mRNA from alignment at Ecto-sp13_S_contig6396:3398..8288+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig6396.17154.1 ID=mRNA_Ecto-sp13_S_contig6396.17154.1|Name=mRNA_Ecto-sp13_S_contig6396.17154.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4891bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6396:3398..8288+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6396:3398..8288+ >mRNA_Ecto-sp13_S_contig6396.17154.1 ID=mRNA_Ecto-sp13_S_contig6396.17154.1|Name=mRNA_Ecto-sp13_S_contig6396.17154.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1260bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6396:3398..8288+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |