mRNA_Ecto-sp13_S_contig6383.17146.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6383.17146.1
Unique NamemRNA_Ecto-sp13_S_contig6383.17146.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6383.17146.1 vs. uniprot
Match: D7G7X7_ECTSI (ATP binding / amino acid binding / protein kinase/ protein serine/threonine kinase/ protein-tyrosine n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7X7_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 4.510e-14
Identity = 34/68 (50.00%), Postives = 51/68 (75.00%), Query Frame = 1 
Query:    1 RCSVNEDGLMDLSVCGITDQDVEAGDLVACLDAAGRQTILDLNLARNDLTTLPPTIFNSLANLRSLSL 204
            RC ++ +G +DLS C + D DV++GDL ACLDAAGR++++ L+L RNDLTTLP  +F  L ++ +L +
Sbjct:   73 RCEIDAEGTLDLSECLVADDDVDSGDLAACLDAAGRESVIFLDLGRNDLTTLPDGVFLDLTSMETLHI 140
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6383.17146.1 vs. uniprot
Match: A0A6H5KF25_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF25_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 8.390e-14
Identity = 35/68 (51.47%), Postives = 50/68 (73.53%), Query Frame = 1 
Query:    1 RCSVNEDGLMDLSVCGITDQDVEAGDLVACLDAAGRQTILDLNLARNDLTTLPPTIFNSLANLRSLSL 204
            RC ++ +G +DLS C I D DV++GDL ACLDAAGR++++ L+L RNDLTTLP  +F  L  + +L +
Sbjct:   65 RCEIDAEGTLDLSECLIADDDVDSGDLAACLDAAGRESVIFLDLGRNDLTTLPDGVFLDLTAMETLHI 132
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6383.17146.1 vs. uniprot
Match: D7G7F2_ECTSI (Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs/ leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7F2_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 2.280e-9
Identity = 32/62 (51.61%), Postives = 42/62 (67.74%), Query Frame = 1 
Query:    4 CSVNEDGLMDLSVCGITDQDVEAGDLVACLDAAGRQTILDLNLARNDLTTLPPTIFNSLANL 189
            C V+EDG + L  CGITD+DV+ GDL +CLD AG++ +++L L  N LT LP  IF  L  L
Sbjct:   33 CEVDEDGYLYLYDCGITDEDVDGGDLASCLDNAGQELVVELWLYGNALTALPAGIFEGLTAL 94
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6383.17146.1 vs. uniprot
Match: D7FL57_ECTSI (Hypothetical leucine rich repeat kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL57_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 1.250e-7
Identity = 29/52 (55.77%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:   34 LSVCGITDQDVEAGDLVACLDAAGRQTILDLNLARNDLTTLPPTIFNSLANL 189
            L+ CGITD+DV+ GDL +CLD AGR+ +++L L+ N LTTLP  IF  L  L
Sbjct:   83 LNDCGITDEDVDGGDLASCLDNAGRELVVELWLSSNALTTLPAGIFEGLTVL 134
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6383.17146.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G7X7_ECTSI4.510e-1450.00ATP binding / amino acid binding / protein kinase/... [more]
A0A6H5KF25_9PHAE8.390e-1451.47Protein kinase domain-containing protein n=1 Tax=E... [more]
D7G7F2_ECTSI2.280e-951.61Tyrosine kinase specific for activated (GTP-bound)... [more]
D7FL57_ECTSI1.250e-755.77Hypothetical leucine rich repeat kinase n=1 Tax=Ec... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6383contigEcto-sp13_S_contig6383:6048..7886 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score69.3
Seed ortholog evalue1.5e-09
Seed eggNOG ortholog2880.D7G7X7
Preferred nameRIPK4
Model size426
KEGG koko:K02861,ko:K08846,ko:K08847,ko:K08848,ko:K14767,ko:K16175,ko:K16289
KEGG Pathwayko04064,ko04210,ko04217,ko04390,ko04391,ko04530,ko04620,ko04621,ko04622,ko04623,ko04668,ko04722,ko05131,ko05152,ko05160,ko05165,ko05169,ko05203,map04064,map04210,map04217,map04390,map04391,map04530,map04620,map04621,map04622,map04623,map04668,map04722,map05131,map05152,map05160,map05165,map05169,map05203
Hectar predicted targeting categoryother localisation
GOsGO:0002009,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006355,GO:0008150,GO:0009653,GO:0009888,GO:0009889,GO:0010468,GO:0010556,GO:0016020,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0032502,GO:0044093,GO:0044424,GO:0044464,GO:0048518,GO:0048729,GO:0048856,GO:0050789,GO:0050794,GO:0051090,GO:0051091,GO:0051092,GO:0051171,GO:0051252,GO:0060255,GO:0060429,GO:0065007,GO:0065009,GO:0080090,GO:1903506,GO:2000112,GO:2001141
Exons6
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG0515@1,COG4886@1,KOG0192@2759,KOG0619@2759
EC2.7.11.1
Cds size399
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03009
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6383.17146.1prot_Ecto-sp13_S_contig6383.17146.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6383 6048..7859 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463883.7493327-CDS-Ecto-sp13_S_contig6383:6047..61231681463883.7493327-CDS-Ecto-sp13_S_contig6383:6047..6123Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6383 6048..6123 -
1681463883.7634428-CDS-Ecto-sp13_S_contig6383:6350..64221681463883.7634428-CDS-Ecto-sp13_S_contig6383:6350..6422Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6383 6351..6422 -
1681463883.7747846-CDS-Ecto-sp13_S_contig6383:6710..67911681463883.7747846-CDS-Ecto-sp13_S_contig6383:6710..6791Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6383 6711..6791 -
1681463883.785691-CDS-Ecto-sp13_S_contig6383:7049..71211681463883.785691-CDS-Ecto-sp13_S_contig6383:7049..7121Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6383 7050..7121 -
1681463883.7963483-CDS-Ecto-sp13_S_contig6383:7341..74371681463883.7963483-CDS-Ecto-sp13_S_contig6383:7341..7437Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6383 7342..7437 -
1681463883.8067205-CDS-Ecto-sp13_S_contig6383:7857..78591681463883.8067205-CDS-Ecto-sp13_S_contig6383:7857..7859Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6383 7858..7859 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463883.8174863-UTR-Ecto-sp13_S_contig6383:7859..78861681463883.8174863-UTR-Ecto-sp13_S_contig6383:7859..7886Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6383 7860..7886 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6383.17146.1

>prot_Ecto-sp13_S_contig6383.17146.1 ID=prot_Ecto-sp13_S_contig6383.17146.1|Name=mRNA_Ecto-sp13_S_contig6383.17146.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=133bp
MDLSVCGITDQDVEAGDLVACLDAAGRQTILDLNLARNDLTTLPPTIFNS
LANLRSLSLFGDFSRGLVTLPSGIFDSLTKLRSLRLEDNGLTTLPPTIFN
SLTILEDLRLDGNGLVTLPPGIFDSLTELTAL*
back to top

mRNA from alignment at Ecto-sp13_S_contig6383:6048..7886-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6383.17146.1 ID=mRNA_Ecto-sp13_S_contig6383.17146.1|Name=mRNA_Ecto-sp13_S_contig6383.17146.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1839bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6383:6048..7886- (Ectocarpus species13 EcNAP12_S_4_19m)
CGATGCAGCGTCAACGAGGACGGATTGATGTAAGAACCTCCAACTAGATT
GACTGTACTCATAGCTTCAAGTGTTTCTGACCGAGACCAGTGATAGTGAT
GGCCGATGGCATGATGTGGTGAGGTTAATTTGCCTCACTACAGGAAATCC
GGATATACATACCGACTTTTAGCGCCATCTTTCTTGCTCGGGTTGTTGCA
CCTCCCAATCACATTACGTCTCTTGTGACGCAACTTCCTGTCGCCCCATC
ATCCACGTTGAAGATTTTTTCGAGGCTTCAAAAAATTAAATGCGTAGCAA
GAAACGAAATGGGTAGCCCCATGCGTTGACAGACAAACGCACCTACATAC
GCGCGATAAGAAATGCTCAACGCGCTAAAACGAGACTAGTCGCATAGTTT
TCCTTGTATTCCGTTTCTTGTGGAACTATGTATGTCGCGTCCGCCTCAGG
GATCTGTCTGTTTGCGGAATAACCGACCAAGATGTCGAAGCGGGAGACTT
GGTGGCATGCCTCGACGCCGCTGGACGACAAACCATCCTTGATCTGTGAG
TGCCTGGCGATTTTTTCACTCGCGGTGATGATTCCTTGCTGCTGGCTAGT
GATCCTCCTACTCCGTGGGCACCAAACACAGTCGAACGCATGATCAGCTC
CGTCTTGTGGTTTGATACTCAAATCAGAGCATCGCGCCCCAACCCGCATA
GCCGTAGGCTAACTCCTGCCCATGACCCACTGCCCTGTGTGTCTCTCTCT
TTCCGACATGAATAGGAACCTTGCAAGGAACGACCTGACGACTCTGCCTC
CGACCATCTTTAACTCCCTTGCGAACCTGAGAAGTCTGTAAGTCCCACCG
AAGGCAGGCGGCGGGGTTTCACCCCTGTAATGAAGGACTAAATGATTCCA
CCTACGTGAAATTGTTTCAAACCCGCGAGATGATGCAGTATACCTACAGG
CATATCGTTCATGTTTTTAGTGGACCATTTTTTGTTCATCTTCCAAACCC
TTGTCAACCAATGTGAGTGCATGAACGCAGCCGCTGACACCTGGCCCTCG
CCTCTGCTCTGATGGCCTCTCCGCCGACGCCCCGAAAACAAACAGGAGTC
TGTTCGGGGATTTTTCCAGGGGTCTGGTGACTCTTCCTTCGGGAATCTTC
GACTCGCTCACGAAACTTAGAAGCCTGTGAGTACCGCCGAAGTGAGCACG
CAGGCTTCCACCTTGGTGTTCCCGTGTGACGTATGACTGTAGTAAAGTCG
TGATAGCCCGTATGCTGCTGTTCGTCAATTTCGCACATCCCGTTTGTGTC
GTCTGTCGACTTGGTTCTCCTCTGTCAGCCAACGTTCCGTCTCGGGTGTA
CGTCACCTCACTTTGGCGTCGCCAGTCGCGACAAAGCGAAACAACAATAA
GCCCTGGCTAACATCTACCCCTTCCTCACCGCCGTGCTTTGTCTGTCTCC
GCCGAAATCAATAGGCGTCTGGAGGACAACGGCCTGACGACTCTGCCTCC
GACGATCTTCAACTCACTTACGATCCTGGAAGATCTGTAAGTTCCCTCGA
AGGCAGGCGGCGGGGTTTCATCCCCGTAATGAACAAACCACCGAATGATT
GCTGTGAAATCGTCGCTAACACGCACGATGCAGTACAGCTAAGCACCTCG
CGTTTTCAACTGTCACTATGATCCACATTCCAACACCCTGTAGTCGAGCT
GCTGACATCTGACCCTCGCCTCTTTTCTGCTGGCCTCTTCGCCGACGTCC
CGAAAACAAACAGGCGTCTAGATGGCAACGGTCTGGTGACTCTTCCCCCG
GGAATTTTCGACTCACTCACGGAACTTACTGCCCTGTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6383:6048..7886-

>mRNA_Ecto-sp13_S_contig6383.17146.1 ID=mRNA_Ecto-sp13_S_contig6383.17146.1|Name=mRNA_Ecto-sp13_S_contig6383.17146.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=399bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6383:6048..7886- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGATCTGTCTGTTTGCGGAATAACCGACCAAGATGTCGAAGCGGGAGA
CTTGGTGGCATGCCTCGACGCCGCTGGACGACAAACCATCCTTGATCTGA
ACCTTGCAAGGAACGACCTGACGACTCTGCCTCCGACCATCTTTAACTCC
CTTGCGAACCTGAGAAGTCTGAGTCTGTTCGGGGATTTTTCCAGGGGTCT
GGTGACTCTTCCTTCGGGAATCTTCGACTCGCTCACGAAACTTAGAAGCC
TGCGTCTGGAGGACAACGGCCTGACGACTCTGCCTCCGACGATCTTCAAC
TCACTTACGATCCTGGAAGATCTGCGTCTAGATGGCAACGGTCTGGTGAC
TCTTCCCCCGGGAATTTTCGACTCACTCACGGAACTTACTGCCCTGTGA
back to top