prot_Ecto-sp13_S_contig6383.17146.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig6383.17146.1
Unique Nameprot_Ecto-sp13_S_contig6383.17146.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length133
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6383.17146.1 vs. uniprot
Match: D7G7X7_ECTSI (ATP binding / amino acid binding / protein kinase/ protein serine/threonine kinase/ protein-tyrosine n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7X7_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 3.040e-11
Identity = 31/59 (52.54%), Postives = 45/59 (76.27%), Query Frame = 0 
Query:    1 MDLSVCGITDQDVEAGDLVACLDAAGRQTILDLNLARNDLTTLPPTIFNSLANLRSLSL 59
            +DLS C + D DV++GDL ACLDAAGR++++ L+L RNDLTTLP  +F  L ++ +L +
Sbjct:   82 LDLSECLVADDDVDSGDLAACLDAAGRESVIFLDLGRNDLTTLPDGVFLDLTSMETLHI 140
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BLAST of mRNA_Ecto-sp13_S_contig6383.17146.1 vs. uniprot
Match: A0A6H5KF25_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF25_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 5.660e-11
Identity = 32/59 (54.24%), Postives = 44/59 (74.58%), Query Frame = 0 
Query:    1 MDLSVCGITDQDVEAGDLVACLDAAGRQTILDLNLARNDLTTLPPTIFNSLANLRSLSL 59
            +DLS C I D DV++GDL ACLDAAGR++++ L+L RNDLTTLP  +F  L  + +L +
Sbjct:   74 LDLSECLIADDDVDSGDLAACLDAAGRESVIFLDLGRNDLTTLPDGVFLDLTAMETLHI 132
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BLAST of mRNA_Ecto-sp13_S_contig6383.17146.1 vs. uniprot
Match: D7FL57_ECTSI (Hypothetical leucine rich repeat kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL57_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 5.090e-8
Identity = 29/52 (55.77%), Postives = 38/52 (73.08%), Query Frame = 0 
Query:    3 LSVCGITDQDVEAGDLVACLDAAGRQTILDLNLARNDLTTLPPTIFNSLANL 54
            L+ CGITD+DV+ GDL +CLD AGR+ +++L L+ N LTTLP  IF  L  L
Sbjct:   83 LNDCGITDEDVDGGDLASCLDNAGRELVVELWLSSNALTTLPAGIFEGLTVL 134
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BLAST of mRNA_Ecto-sp13_S_contig6383.17146.1 vs. uniprot
Match: D7G7F2_ECTSI (Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs/ leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7F2_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 3.910e-6
Identity = 26/49 (53.06%), Postives = 34/49 (69.39%), Query Frame = 0 
Query:    6 CGITDQDVEAGDLVACLDAAGRQTILDLNLARNDLTTLPPTIFNSLANL 54
            CGITD+DV+ GDL +CLD AG++ +++L L  N LT LP  IF  L  L
Sbjct:   46 CGITDEDVDGGDLASCLDNAGQELVVELWLYGNALTALPAGIFEGLTAL 94
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6383.17146.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G7X7_ECTSI3.040e-1152.54ATP binding / amino acid binding / protein kinase/... [more]
A0A6H5KF25_9PHAE5.660e-1154.24Protein kinase domain-containing protein n=1 Tax=E... [more]
D7FL57_ECTSI5.090e-855.77Hypothetical leucine rich repeat kinase n=1 Tax=Ec... [more]
D7G7F2_ECTSI3.910e-653.06Tyrosine kinase specific for activated (GTP-bound)... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 102..125
e-value: 0.016
score: 24.4
coord: 31..50
e-value: 83.0
score: 5.7
coord: 78..101
e-value: 2.1E-4
score: 30.6
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..132
e-value: 1.9E-25
score: 91.0
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 80..132
e-value: 1.8E-10
score: 40.4
NoneNo IPR availablePANTHERPTHR24366:SF102LEUCINE RICH REPEAT CONTAINING 15coord: 32..131
NoneNo IPR availablePANTHERPTHR24366FAMILY NOT NAMEDcoord: 32..131
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 29..130

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6383contigEcto-sp13_S_contig6383:6048..7859 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6383.17146.1mRNA_Ecto-sp13_S_contig6383.17146.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig6383 6048..7886 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig6383.17146.1 ID=prot_Ecto-sp13_S_contig6383.17146.1|Name=mRNA_Ecto-sp13_S_contig6383.17146.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=133bp
MDLSVCGITDQDVEAGDLVACLDAAGRQTILDLNLARNDLTTLPPTIFNS
LANLRSLSLFGDFSRGLVTLPSGIFDSLTKLRSLRLEDNGLTTLPPTIFN
SLTILEDLRLDGNGLVTLPPGIFDSLTELTAL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt