mRNA_Ecto-sp13_S_contig6383.17145.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6383.17145.1
Unique NamemRNA_Ecto-sp13_S_contig6383.17145.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6383.17145.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6383contigEcto-sp13_S_contig6383:1831..5762 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size572
Hectar predicted targeting categoryother localisation
Exons9
Cds size543
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6383.17145.1prot_Ecto-sp13_S_contig6383.17145.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6383 1859..5762 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463883.6254587-UTR-Ecto-sp13_S_contig6383:1830..18581681463883.6254587-UTR-Ecto-sp13_S_contig6383:1830..1858Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6383 1831..1858 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463883.6350782-CDS-Ecto-sp13_S_contig6383:1858..18661681463883.6350782-CDS-Ecto-sp13_S_contig6383:1858..1866Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6383 1859..1866 -
1681463883.644245-CDS-Ecto-sp13_S_contig6383:2695..27731681463883.644245-CDS-Ecto-sp13_S_contig6383:2695..2773Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6383 2696..2773 -
1681463883.653234-CDS-Ecto-sp13_S_contig6383:2998..30331681463883.653234-CDS-Ecto-sp13_S_contig6383:2998..3033Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6383 2999..3033 -
1681463883.662177-CDS-Ecto-sp13_S_contig6383:3456..35161681463883.662177-CDS-Ecto-sp13_S_contig6383:3456..3516Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6383 3457..3516 -
1681463883.6709228-CDS-Ecto-sp13_S_contig6383:4371..44431681463883.6709228-CDS-Ecto-sp13_S_contig6383:4371..4443Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6383 4372..4443 -
1681463883.684653-CDS-Ecto-sp13_S_contig6383:4688..47601681463883.684653-CDS-Ecto-sp13_S_contig6383:4688..4760Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6383 4689..4760 -
1681463883.6961856-CDS-Ecto-sp13_S_contig6383:5044..51161681463883.6961856-CDS-Ecto-sp13_S_contig6383:5044..5116Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6383 5045..5116 -
1681463883.708011-CDS-Ecto-sp13_S_contig6383:5381..54561681463883.708011-CDS-Ecto-sp13_S_contig6383:5381..5456Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6383 5382..5456 -
1681463883.7186744-CDS-Ecto-sp13_S_contig6383:5691..57621681463883.7186744-CDS-Ecto-sp13_S_contig6383:5691..5762Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6383 5692..5762 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6383.17145.1

>prot_Ecto-sp13_S_contig6383.17145.1 ID=prot_Ecto-sp13_S_contig6383.17145.1|Name=mRNA_Ecto-sp13_S_contig6383.17145.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=181bp
SISRNDLTTLPPTIFNSLTKLNFLGISNNELLTTLPSTVFDSLTVLTFLV
LSNSGLVTLPSGVFDSLVELTFLSLRGNSLTTLRTGIFNSLTKLGSLNLN
GNVLVTLPSGIFDSLTQLGSLDLRENPGLQCLPTVPPTAVSQLRVDTVGT
ECGCFLPDVSNPCGENEACSPGATGFTCGL*
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mRNA from alignment at Ecto-sp13_S_contig6383:1831..5762-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6383.17145.1 ID=mRNA_Ecto-sp13_S_contig6383.17145.1|Name=mRNA_Ecto-sp13_S_contig6383.17145.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3932bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6383:1831..5762- (Ectocarpus species13 EcNAP12_S_4_19m)
AGCATCTCAAGGAACGACCTGACGACTCTGCCTCCGACTATCTTTAACTC
CCTTACGAAGCTAAATTTTCTGTAAGTCCCGTTGAGCGAGGTATGTAGGC
GGTTGGAACCACGTAGTGAAATTGTTCCCAAACTGCATGATGAGTAATCC
AAAGATTCTATCGTAGCGTCTTCAACCACCAAGACCTGGTCTTCATCTTC
CCAACACTTTTCTTTGAATGTTTGTCGTGGCCAAGTGCGTGAATGCAAGT
TGCTAATATCTGCCCGTGTTCATTTTCCTGTTGACTCTCTCCGACGACAT
CAACAGGGGCATTTCAAACAACGAGCTTCTGACGACTTTGCCCTCGACCG
TCTTCGACTCTCTTACGGTCCTGACGTTTCTGTAAGTACCGTCGAGCGAG
GGGGGTGGTGGGGTTTCACCACAAATTTTCCCGAGAAATCAAAGCACGTG
GTGATGTTGTTCCCAGACCGCGCGATGCAGCACATCCCTGAGCACCTCGC
ACCTTCAATTGCCAGTGTGGCTTCATCTTACAAACACGTCAGTTGGGTGA
GCATCGTCATGATCAAATGCATGCAAGCAGTGGCTAACACCTGTTCCTCC
CCCGCCGCTCTGCTGGTCTCTTCTTTGACGCCCCGAAAATATGCAGGGTT
CTGTCCAACAGTGGGTTGGTGACTTTGCCCTCGGGAGTCTTCGACTCACT
CGTGGAACTCACATTCCTGTGAGTACCGCCGAAGTTTTAGTACGTACAGC
TTCCTCCTTGATGTTCCCGCGTGATGCATAGCTGAAGTGGTTGCTGCGGC
TCGCCAACGACGCACGTCCCGTGTGTGTTCATTTTTCGCCTTGGTTCTGC
TTTGTCGCAGTCACCGTTCCATTTAGTGTTTACCTCAACTCGCATCGGCG
TCGACGACGGTCGCGACCAAGAGAAACAAAATAGCAGTGGCTAACACCTT
TCCTTTTCCCACCCTCTGCTGGTCTCTTCGCCTTCGCCGTAAAAACAAGC
AGGAGTCTCCGTGGCAACAGTCTGACGACTCTGCGTACGGGCATCTTCAA
CTCCCTTACGAAGCTGGGAAGCCTGTAAGTCCCGCCGAAGGCAGGCGGCC
GGGTTTCACCCGCGTATTGAAGGACCCAACGATTCCAACTATGTAGCAGT
GGAAGTGTTCCAAACCCGCACGATGCAGTACACCTAAGCATCTCGCGTCT
TCAGCTACTAATCTGGTCTTCATCTTCATTGTCGTAATCGAGTGCATGAA
CGGAGTTCCTGACACCTGGCCCTCGCCGCTGCCGTGCTGGCCTCTTCGCC
GACATCCCGAAAATGTCAGAAATCTCAATGGCAACGTTCTGGTGACTCTT
CCGTCGGGAATCTTCGACTCACTAACGCAACTTGGAAGCCTGTGAGTACC
GCCGAAGTTGGAGCACGCACAGCTTTCTCCTTGCTGTTCCCACGTGATGC
AAAACTGAAGTGCTTGCGCACTTTGTGTTGTTCTGGTCGCTGTAGTACGC
CGACTACGCACAAACACGCACATCCTGCCATTTAGGTCCTGCTCTGTCAG
GCACGGTTGCGCCTCGGATGTACACCAGCCTAACTTGTTGCGTCGACTGC
TGCGACCAAGCGAAACAACAGCATTGGCAGATACCTGCCCCTCCCTTTTC
GCGCTGCTTGTCTCCCTCGTCTGACACTCGAAAAACAAGCAAGACAACTG
ATGATGCTGTCGAACGAGGACTGGACGTTGAGTTGAATTTGATTGGATCT
AGCTGGAATGAAAGCCGAAGGATAAAAGAAACAATACAAAACACGATTAA
TCTTTGTAAATAATATGTCCACGTGTTTGAACAATGTTGTTTAAGCTTAT
CAGGTTATTACGTGTAGAAGTATCACAACCTACGAAAAAGATGGTATACA
TCTGGCGAAATAGTAGTGGACGATGAATTGAAGTGATCTACGAGCAATTG
TCGGAGGGGACACGAAAGATTTACACTCCCAATGACTTTGAAGTAGTATG
ATGTCATGCCGACTAGTTGTTTCAATTGTATCGCTTACTCGAGGAAAATT
CGTTGACAGCTGGGATGGCATCGCACACATTGAGCCCGTGGTCAGTGTGC
TCCGTTTTGGGATGATGTCGTGCTAGCATTCGACAATTACATGTCGATTG
TTCCTTGACCCCGACAAGACATATAATAAGTCTGGCAGGTGCGTTCCAAT
GCCGGGGTTAACGTTTCTCGTCATTTCGACTCCTGGTCGTGCGCAGGGAT
TTACGCGAAAACCCGGGCCTGCAGTGCCTCCCCACCGTGCCACCGACGGC
GGTCAGGTAAGAATTTTTGTCGCCGTGTATCTTCATTTTTAGAGTTCACG
TTCCTTGTCGGATGTTTTATCATACGGTGGGTCCTGACATAGGTAACTAG
GAGATCGACGTACTGTGTGTCAGGCTGCACCTACTTGTGGTTGGATTGCG
TGCGCATTCATACACATGTATGTCGAAGGTTTGAGAACTTCAAATTGCAT
CTCTTCGCTCAAGGTTCGCAGCTGTGTGCATGGGCGCAATGCCGACGGCG
TGATATTTCCGTTAGGTCGCTCACAAACCAATGTATTTGCGTAATGTAGT
CTATGTAGACTACTATACACGTTGGATGCGCCTTTCACGACATCATCCAT
GGAAGAATAGAAATATTCCGTTTTCCCGACACCCGCACCTACCTTTCCTC
CGCGTTTTGCTCCGTTTTCCTCCTCGCAGTCAACTGAGGGTCGACACAGT
CGGTACTGAATGCGGTGAGTGAGAATGTTCCAAGAGCGATCGGACGGAAT
GAGGAACAATATTTCTGGGTGAAACCTCGCACAATACTCCACCACACTAC
AACTCATTCGTCCTCAAAATACATGTGGATTGGAAGAAATTGTGAGCTGT
TCGGCCTGCGGCACGGGCTTCGCGGCGTGTCAATTTTTGAATGCGTCATC
TTACATGTTTTGTACATCTGCGCGTGCGTGTAACTGCAGGATGTTTCCTC
CCCGATGTAAGCAACCCGTGTGGCGAAAACGAGGCATGCTCGCCTGGTGC
CACAGGATTCACATGTGGTAAGAGAGTTACATATAAATACCTGACAATCT
GCTCACTGATGTCGTCGATTGTACGTCCGCATTAAGCAATTGTCAACGCT
AGTGCCGTCTCTCAAGTATTTGGTTGTCCCTTCCTTCCATGACGTGTGCG
GGCCATCGGCCACAATCCGTAACGCGTGGTAACGACGGGGGTCTTTCCAA
CCCAAGTGACAATACGATAGTGCAAAACAAAAGTGCAACATGCCCCTGAC
AATCCACACGCTCAAGCAGAAAATTACTGTGGATGATGTCGTGTTACGTA
CTCTCCTTGTCGTAGGATACGGACTTTGCATTTTCTCTCCACTCTAGACG
AAGCCTTTCAGTGGTCAAGCACGCCGTTGGGCATGGAAGTGGTGTCGCTA
TTCCCAATCCTCGCACGCAAGAAGCAATTTTATTGGCCTGTTTGACATTG
CACTCGAACCCACCAGCATCCGTTGCGGATCTGACATAGTCTACTGTAGT
TCATCATTGCATGGCCACCGGTCTCAGTAAGCAAACGGATGGGCCGGAAA
AGTGCGAACTCGCTGGCCGCGTTCAACAAGCAGCAGGGGTAGTCTAGAGA
TCGAGATCGGGATCTACCTATTACAAGAAGCACTGGATGGTTGCCTGAGA
CCGTAGAAAACAGTTTTGCCAGATGTAGTCTAATGTACCTCTGGTGGCAC
TGATGAACGATACCCTACACACCTTGAGAGAACAAAAACTTGGTATGTGT
ACCTCTTCTGCGATACAACGGCGATGATCTATGTACCAGAAGCCTTCATA
AATAATACTCCATATGCGCCTACGCCAATTTTTGATCCCTTTGCAGGTTT
ATGAACATGGCACTCATGCCGCCCAATCGAGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6383:1831..5762-

>mRNA_Ecto-sp13_S_contig6383.17145.1 ID=mRNA_Ecto-sp13_S_contig6383.17145.1|Name=mRNA_Ecto-sp13_S_contig6383.17145.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=543bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6383:1831..5762- (Ectocarpus species13 EcNAP12_S_4_19m)
AGCATCTCAAGGAACGACCTGACGACTCTGCCTCCGACTATCTTTAACTC
CCTTACGAAGCTAAATTTTCTGGGCATTTCAAACAACGAGCTTCTGACGA
CTTTGCCCTCGACCGTCTTCGACTCTCTTACGGTCCTGACGTTTCTGGTT
CTGTCCAACAGTGGGTTGGTGACTTTGCCCTCGGGAGTCTTCGACTCACT
CGTGGAACTCACATTCCTGAGTCTCCGTGGCAACAGTCTGACGACTCTGC
GTACGGGCATCTTCAACTCCCTTACGAAGCTGGGAAGCCTAAATCTCAAT
GGCAACGTTCTGGTGACTCTTCCGTCGGGAATCTTCGACTCACTAACGCA
ACTTGGAAGCCTGGATTTACGCGAAAACCCGGGCCTGCAGTGCCTCCCCA
CCGTGCCACCGACGGCGGTCAGTCAACTGAGGGTCGACACAGTCGGTACT
GAATGCGGATGTTTCCTCCCCGATGTAAGCAACCCGTGTGGCGAAAACGA
GGCATGCTCGCCTGGTGCCACAGGATTCACATGTGGTTTATGA
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