prot_Ecto-sp13_S_contig6383.17145.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig6383.17145.1
Unique Nameprot_Ecto-sp13_S_contig6383.17145.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length181
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6383.17145.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 91..114
e-value: 0.0067
score: 25.6
coord: 43..66
e-value: 4.5
score: 16.1
coord: 67..90
e-value: 0.029
score: 23.5
coord: 18..42
e-value: 12.0
score: 12.7
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 70..126
e-value: 3.6E-10
score: 39.4
coord: 2..54
e-value: 8.5E-8
score: 31.8
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..145
e-value: 1.1E-31
score: 111.4
NoneNo IPR availablePANTHERPTHR24366:SF102LEUCINE RICH REPEAT CONTAINING 15coord: 3..143
NoneNo IPR availablePANTHERPTHR24366FAMILY NOT NAMEDcoord: 3..143
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 2..134

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6383contigEcto-sp13_S_contig6383:1859..5762 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6383.17145.1mRNA_Ecto-sp13_S_contig6383.17145.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig6383 1831..5762 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig6383.17145.1 ID=prot_Ecto-sp13_S_contig6383.17145.1|Name=mRNA_Ecto-sp13_S_contig6383.17145.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=181bp
SISRNDLTTLPPTIFNSLTKLNFLGISNNELLTTLPSTVFDSLTVLTFLV
LSNSGLVTLPSGVFDSLVELTFLSLRGNSLTTLRTGIFNSLTKLGSLNLN
GNVLVTLPSGIFDSLTQLGSLDLRENPGLQCLPTVPPTAVSQLRVDTVGT
ECGCFLPDVSNPCGENEACSPGATGFTCGL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf