mRNA_Ecto-sp13_S_contig6353.17106.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig6353.17106.1 vs. uniprot
Match: D8LTB9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTB9_ECTSI) HSP 1 Score: 329 bits (843), Expect = 8.140e-110 Identity = 171/172 (99.42%), Postives = 171/172 (99.42%), Query Frame = 1
Query: 433 KVPQLMIYMRVANIALCGILAATAVLKLIGAGVDVAGAVLACYLCAFSCILCCFETHLKVVAKTIAANFGFLYNAKGRAVFLIFVGVLCFSLNSDIAFVAGALMMVNAVFNFYVIFKYPEFERDLQRKDLESEGRDYLRANRGALAQAGVEFARNNPDLTRKGAQAAASTYV 948
KVPQLMIYMRVANIALCGILAATAVLKLIGAGVDVAGAVLACYLCAFSCILCCFETHLKVVAKTIAANFGFLYNAKGRAVFLIFVGVLCFSLNSDIAFVAGALMMVNAVFNFYVIFKYPEFERDLQRKDLESEGRDYLRANRGALAQAGVEFARNNPDL RKGAQAAASTYV
Sbjct: 50 KVPQLMIYMRVANIALCGILAATAVLKLIGAGVDVAGAVLACYLCAFSCILCCFETHLKVVAKTIAANFGFLYNAKGRAVFLIFVGVLCFSLNSDIAFVAGALMMVNAVFNFYVIFKYPEFERDLQRKDLESEGRDYLRANRGALAQAGVEFARNNPDLARKGAQAAASTYV 221
BLAST of mRNA_Ecto-sp13_S_contig6353.17106.1 vs. uniprot
Match: A0A836CFZ2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFZ2_9STRA) HSP 1 Score: 172 bits (436), Expect = 3.160e-49 Identity = 91/168 (54.17%), Postives = 124/168 (73.81%), Query Frame = 1
Query: 445 LMIYMRVANIALCGILAATAVLKLIGAGVDVAGAVLACYLCAFSCILCCFETHLKVVAKTIAANFGFLYNAKGRAVFLIFVGVLCFSLNSDIAFVAGALMMVNAVFNFYVIFKYPEFERDLQRKDLESEGRDYLRANRGALAQAGVEFARNNPDLTRKGAQAAASTYV 948
++I R+ N+ LC +L+ATAVL+LIG + VLA YL AF+CILCCFETH+ +A A+NFGFLYNAKGRA+FL+FVG+LCFS S + +++G M+ +++FNF+VI KYPE + QRKDLES RD++R N+GA+A+ GV FA+NNP A+ A ST+V
Sbjct: 1 MVILTRLINMGLCVLLSATAVLELIGLP-NFQTLVLAVYLFAFACILCCFETHISFIASLAASNFGFLYNAKGRALFLLFVGILCFSFGSILGYISGIAMIADSIFNFFVILKYPEVQNQ-QRKDLESSSRDFVRNNQGAIARQGVAFAQNNPQQAAAAARTA-STFV 165
BLAST of mRNA_Ecto-sp13_S_contig6353.17106.1 vs. uniprot
Match: W7TT71_9STRA (Golgi apparatus membrane protein TVP15 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TT71_9STRA) HSP 1 Score: 139 bits (351), Expect = 2.460e-35 Identity = 87/175 (49.71%), Postives = 108/175 (61.71%), Query Frame = 1
Query: 406 AGRPSSGSRKVPQLMIYMRVANIALCGILAATAVLKLI-GAGVDVAGAVLACYLCAFSCILCCFETHLKVVAKTIAANFGFLYNAKGRAVFLIFVGVLCFSLNSDIAFVAGALMMVNAVFNFYVIFKYPEFERDLQRKDLESEGRDYLRANRGALAQAGVEFARNNPDLTRKGAQ 927
A +P S + P L+IYMRVAN ALC +++A AVL +I AG A VLA Y+ AFSC+LCCFE +L+ VAK IA NFGFLY+AK RA FLIFVGVLCFSL VAGA M+ NA+FN V+ KYP++ + E E +F + NP L RKGA+
Sbjct: 69 ATQPQPPSGQTPPLVIYMRVANFALCILMSAAAVLTVIVPAGATPASWVLAFYVLAFSCLLCCFEVNLRRVAKHIANNFGFLYDAKSRATFLIFVGVLCFSLGIT-GKVAGAAMIANALFNTVVLCKYPQYATNAPTTTAEQEA---------------AQFMQRNPGLARKGAR 227
BLAST of mRNA_Ecto-sp13_S_contig6353.17106.1 vs. uniprot
Match: A0A482T2R9_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T2R9_9ARCH) HSP 1 Score: 128 bits (322), Expect = 4.290e-32 Identity = 67/135 (49.63%), Postives = 91/135 (67.41%), Query Frame = 1
Query: 547 VLACYLCAFSCILCCFETHLKVVAKTIAANFGFLYNAKGRAVFLIFVGVLCFSLNSDIAFVAGALMMVNAVFNFYVIFKYPEFERDLQRKDLESEGRDYLRANRGALAQ-------AGVEFARNNPDLTRKGAQA 930
VLACY+ FSC+LCCFETHLK V+K IA NFGF+Y+AK R++F+IF+G + FS S + G M+ NA FN + +F+YP++E D+QRKD +SE +DYL +N Q A E R NP++ R+G QA
Sbjct: 19 VLACYVVVFSCLLCCFETHLKQVSKIIAMNFGFMYSAKSRSLFMIFIGTILFSF-SLFGKIIGLCMLANAGFNLFAVFRYPQYE-DMQRKDAQSEIQDYLASNPAFAKQIVDAGLKASTEVLRQNPEIARQGTQA 151
BLAST of mRNA_Ecto-sp13_S_contig6353.17106.1 vs. uniprot
Match: A0A6U4HF89_9STRA (Hypothetical protein n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4HF89_9STRA) HSP 1 Score: 118 bits (296), Expect = 1.950e-27 Identity = 75/178 (42.13%), Postives = 106/178 (59.55%), Query Frame = 1
Query: 406 AGRPSSGSRKVPQLMIYMRVANIALCGILAATAVLKLIGAGVDVAGAVLACYLCAFSCILCCFETHLKVVAKTIAANFGFLYNAKGRAVFLIFVGVLCFSLNSDIAFVAGALMMVNAVFNFYVIFKYPE-FERDLQRKDLESEGRDYLRANRGALAQAGVEFARNNPDLTRKGAQAAA 936
AG + K + +YMRV N+ L ++ A A++KL+ A D+A V+ Y FS ++CCFETH K VA I NFGF+Y+A GR F+IFVG+LC+SL I ++AGALM+VNA FY+++KYP F +L+ + E+ G+ +A A NNP+ GA AAA
Sbjct: 82 AGMTQEEAEKGRKYHLYMRVVNVILTALICAAAIIKLL-ASPDLALGVICLYAFGFSVLICCFETHFKQVALLIQDNFGFMYDATGRFFFMIFVGILCWSLGI-IGYIAGALMIVNACVGFYIMYKYPHVFTEELESFE-ETMGKHAAQA------------AANNPEAVAAGAGAAA 244
BLAST of mRNA_Ecto-sp13_S_contig6353.17106.1 vs. uniprot
Match: A0A7S2WC07_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WC07_9STRA) HSP 1 Score: 118 bits (295), Expect = 4.030e-27 Identity = 73/193 (37.82%), Postives = 112/193 (58.03%), Query Frame = 1
Query: 409 GRPSSGSRK-VPQLMIYMRVANIALCGILAATAVLKLIGAGVDVAGAVLACYLCAFSCILCCFETHLKVVAKTIAANFGFLYNAKGRAVFLIFVGVLCFSLNSDIAFVAGALMMVNAVFNFYVIFKYPEFERDLQRKDLESEGRD------------YLRANR---GALAQAGVEFARNNPDLTRKGAQAAAS 939
G P +G + + + ++YMR+AN+A+ +L TA L ++ AV+A Y+ F C++CCFETHLK V+ IA NFGF+YNAKGR +F+I + LC +LN + G LM A++N YVI +PE+ + Q D + E + Y++ N A+A AG ++A NNP++ +G QA A+
Sbjct: 78 GAPETGGKTTLSKKLLYMRLANVAVA-VLMVTAALTTFITSSSLSTAVIALYISCFGCLVCCFETHLKQVSIIIADNFGFMYNAKGRFIFMILMATLCMTLNV-FGQITGGLMYGVALYNLYVICMHPEYGSETQELDRKGENPNSIQHVAQSYATGYVQNNPDQVAAVASAGAQWAYNNPEVAAQGVQAFAN 268
BLAST of mRNA_Ecto-sp13_S_contig6353.17106.1 vs. uniprot
Match: A0A7S2MMX0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MMX0_9STRA) HSP 1 Score: 115 bits (288), Expect = 3.540e-26 Identity = 60/173 (34.68%), Postives = 102/173 (58.96%), Query Frame = 1
Query: 415 PSSGSRKVPQLMIYMRVANIALCGILAATAVLKLIGAGVDVAGAVLACYLCAFSCILCCFETHLKVVAKTIAANFGFLYNAKGRAVFLIFVGVLCFSLNSDIAFVAGALMMVNAVFNFYVIFKYPEFERDLQRKDLESEGRDYLRANRGALAQAGVEFARNNPDLTRKGAQAA 933
P +P+L++YMR+AN+AL ++ +AV + + ++ ++ Y+ F C+ CC+ETHLK V+ IA NFGFLYNAK R +F++ + LC++LN I + L + N YV+FK+P ++ ++ DL +G + ++ +Q V +AR NPD + A++A
Sbjct: 80 PKKKGPDLPKLILYMRLANVALSALMITSAVTSALMSA-SLSNFIIGAYVSCFGCLFCCYETHLKQVSVFIADNFGFLYNAKARCLFMMLIATLCYTLNI-IGMITAFLCVAAVCLNVYVLFKHPHYQDQIKNDDLHGKGPETIQ---DMASQYAVSYARENPDQVQAAARSA 247
BLAST of mRNA_Ecto-sp13_S_contig6353.17106.1 vs. uniprot
Match: A0A7S4EDS9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EDS9_9STRA) HSP 1 Score: 108 bits (270), Expect = 1.350e-23 Identity = 67/173 (38.73%), Postives = 102/173 (58.96%), Query Frame = 1
Query: 430 RKVPQ----LMIYMRVANIALCGILAATAVLKLIGAGVDVAGAVLACYLCAFSCILCCFETHLKVVAKTIAANFGFLYNAKGRAVFLIFVGVLCFSLNSDIAFVAGALMMVNAVFNFYVIFKYPEFERDLQRKDLESEGRDYLRANRGAL-AQAGVEFARNNPDLTRKGAQAA 933
+K+PQ L+I MR+ N+ + ++AA A++KL+ G VL Y+ F+ ++CCFETHL V++ I NFGFLYN KGR F I V LCFS+ I ++G ++V A +N YVI+K+P++ER++ D+E G + G++ A G ++ L GA AA
Sbjct: 77 QKLPQTRSGLIISMRLLNMGVSILMAAAAIIKLLSLPAFTKG-VLCLYIWFFALLICCFETHLAQVSRIIGENFGFLYNVKGRVTFFILVSFLCFSIGL-IGLISGVGLLVAAAYNAYVIYKHPDYEREMLENDVEQRGPSSVYGVAGSVVAPPGASSGGDSSWLEGAGAAAA 247
BLAST of mRNA_Ecto-sp13_S_contig6353.17106.1 vs. uniprot
Match: A0A4D9D7K6_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D7K6_9STRA) HSP 1 Score: 102 bits (255), Expect = 7.590e-22 Identity = 74/171 (43.27%), Postives = 95/171 (55.56%), Query Frame = 1
Query: 427 SRKVPQLMIYMRVANIALCGILAATAVLKLI-GAGVDVAGAVLACYLCAFSCILCCFETHLKVVAKTIAANFGFLYNAKGRAVFLIFVGVLCFSLNSDIAFVAGALMMVNAVFNFYVIFKYPEFERDLQRKDLESEGRDYLRANRGALAQAGVEFARNNPDLTRKGAQAAA 936
S + P L+IYMRVAN ALC +++A AVL +I AG A VLA Y+ +VAK IA NFGFLY+AK RA FLIFVGVLCFSL VAGA M+ NA+FN V+ KYP++ + E E +++ N G + G + G+Q AA
Sbjct: 76 SGQTPPLVIYMRVANFALCILMSAAAVLTVIVPAGATPASWVLAFYV---------------LVAKHIANNFGFLYDAKSRATFLIFVGVLCFSLGIT-GKVAGAAMIANALFNTVVLCKYPQYATNAPTTTAEQEAAQFMQRNPGLARKVGGAM------INAAGSQPAA 224
BLAST of mRNA_Ecto-sp13_S_contig6353.17106.1 vs. uniprot
Match: A0A7S3JYJ7_9STRA (Hypothetical protein n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JYJ7_9STRA) HSP 1 Score: 91.7 bits (226), Expect = 8.670e-18 Identity = 55/147 (37.41%), Postives = 85/147 (57.82%), Query Frame = 1
Query: 415 PSSGSR---------KVPQLMIYMRVANIALCGILAATAVLKLIGAGVDVAGAVLACYLCAFSCILCCFETHLKVVAKTIAANFGFLYNAKGRAVFLIFVGVLCFSLNS--DIAFVAGALMMVNAVFNFYVIFKYPEFERDLQRKDL 822
P+SGS K+P+ ++ MR+AN+ +LA A LKL DV+ V++ YL AF+ ++ FE H+ + K IA N GF+Y A GRA F+I +G+LCFS + G ++V A+ N +++FK+P +ER + DL
Sbjct: 73 PASGSSQPLMDISWGKLPREIVLMRIANLCSAFLLACLAALKLQKNTGDVSSGVISFYLFAFAILIFTFECHVSFLGKVIADNLGFMYQAPGRASFMILLGMLCFSDEPLPGFGYFVGIFVIVTALLNAFIMFKFPNYERSCRINDL 219 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6353.17106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 21
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig6353.17106.1 >prot_Ecto-sp13_S_contig6353.17106.1 ID=prot_Ecto-sp13_S_contig6353.17106.1|Name=mRNA_Ecto-sp13_S_contig6353.17106.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=168bp MIYMRVANIALCGILAATAVLKLIGAGVDVAGAVLACYLCAFSCILCCFEback to top mRNA from alignment at Ecto-sp13_S_contig6353:4820..8314- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig6353.17106.1 ID=mRNA_Ecto-sp13_S_contig6353.17106.1|Name=mRNA_Ecto-sp13_S_contig6353.17106.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3495bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6353:4820..8314- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6353:4820..8314- >mRNA_Ecto-sp13_S_contig6353.17106.1 ID=mRNA_Ecto-sp13_S_contig6353.17106.1|Name=mRNA_Ecto-sp13_S_contig6353.17106.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=504bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6353:4820..8314- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |