mRNA_Ecto-sp13_S_contig63496.17102.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig63496.17102.1
Unique NamemRNA_Ecto-sp13_S_contig63496.17102.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig63496.17102.1 vs. uniprot
Match: D7G395_ECTSI (Possible MAPK n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G395_ECTSI)

HSP 1 Score: 189 bits (481), Expect = 2.330e-53
Identity = 96/103 (93.20%), Postives = 99/103 (96.12%), Query Frame = 1 
Query:    1 GALLALSVTNSCRLPVELPDLFFRWLLLGGESATVKHKHGQQLSPSCHAFEPSVEDMVALDKSLERPFEALKDAVQSEDALKGLLEIEDLPADTSAADYITYM 309
            GALLALSVTNSCRLPVELPDLFFRWLLLGGESA VK KHGQQLSPSC +FEPSVEDMVALDKSLERPFEALKDAVQS+DALKGLLEIEDLPADTSAADYI +M
Sbjct: 2212 GALLALSVTNSCRLPVELPDLFFRWLLLGGESAVVKQKHGQQLSPSCPSFEPSVEDMVALDKSLERPFEALKDAVQSDDALKGLLEIEDLPADTSAADYIAHM 2314
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BLAST of mRNA_Ecto-sp13_S_contig63496.17102.1 vs. uniprot
Match: A0A8J4C3Q5_9CHLO (HECT domain-containing protein n=2 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4C3Q5_9CHLO)

HSP 1 Score: 50.8 bits (120), Expect = 9.620e-5
Identity = 38/124 (30.65%), Postives = 52/124 (41.94%), Query Frame = 1 
Query:    1 GALLALSVTNSCRLPVELPDLFFRWLLLGGESATVKHKHGQQLSPSCHAFEPSVEDMVALDKSLERPFEALKDAVQSEDALKGLLEIEDLPADTSAADYITYMVRQTFLEPVQWQMSEVREAFF 372
            G LL  S+ N   + + LP + FR LL G          G         F P++E +   D         +  A    D L+G+LE+E LPAD SA  Y  Y V +   + V WQ   +   FF
Sbjct:  448 GWLLGQSLLNRAPVGLPLPPVLFRALLEGT---------GTDCGSGGSGFVPTMEMLAEFDPDAATGINNV--AALPSDQLRGMLELEGLPADWSAEKYAQYAVTRILRDEVAWQSEALASGFF 560
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig63496.17102.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G395_ECTSI2.330e-5393.20Possible MAPK n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A8J4C3Q5_9CHLO9.620e-530.65HECT domain-containing protein n=2 Tax=Volvox reti... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig63496contigEcto-sp13_S_contig63496:107..487 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score191.8
Seed ortholog evalue1.9e-46
Seed eggNOG ortholog2880.D7G395
Model size381
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.cyclin-dependent protein serine/threonine kinase activity
EggNOG OGsKOG0593@1,KOG0593@2759
Cds size381
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463879.9037282-CDS-Ecto-sp13_S_contig63496:106..4871681463879.9037282-CDS-Ecto-sp13_S_contig63496:106..487Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig63496 107..487 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig63496.17102.1prot_Ecto-sp13_S_contig63496.17102.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig63496 107..487 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig63496.17102.1

>prot_Ecto-sp13_S_contig63496.17102.1 ID=prot_Ecto-sp13_S_contig63496.17102.1|Name=mRNA_Ecto-sp13_S_contig63496.17102.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=127bp
GALLALSVTNSCRLPVELPDLFFRWLLLGGESATVKHKHGQQLSPSCHAF
EPSVEDMVALDKSLERPFEALKDAVQSEDALKGLLEIEDLPADTSAADYI
TYMVRQTFLEPVQWQMSEVREAFFRTL
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mRNA from alignment at Ecto-sp13_S_contig63496:107..487+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig63496.17102.1 ID=mRNA_Ecto-sp13_S_contig63496.17102.1|Name=mRNA_Ecto-sp13_S_contig63496.17102.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=381bp|location=Sequence derived from alignment at Ecto-sp13_S_contig63496:107..487+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGCACTTCTGGCACTGTCAGTGACGAACTCCTGCCGGCTTCCGGTGGA
ACTCCCTGACCTGTTCTTTCGGTGGCTCCTGCTTGGTGGTGAAAGTGCAA
CAGTAAAACACAAACATGGGCAACAGCTGTCGCCATCCTGTCATGCGTTC
GAGCCTTCAGTAGAGGACATGGTGGCGCTGGACAAGTCCTTAGAGCGACC
TTTTGAGGCTCTGAAAGACGCTGTACAGTCCGAAGACGCTCTGAAAGGCC
TCTTGGAAATCGAGGACCTGCCGGCTGACACTTCAGCAGCTGACTACATC
ACGTACATGGTGAGGCAGACGTTTTTAGAGCCGGTGCAGTGGCAGATGTC
CGAAGTTCGGGAGGCGTTCTTCCGTACCCTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig63496:107..487+

>mRNA_Ecto-sp13_S_contig63496.17102.1 ID=mRNA_Ecto-sp13_S_contig63496.17102.1|Name=mRNA_Ecto-sp13_S_contig63496.17102.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=381bp|location=Sequence derived from alignment at Ecto-sp13_S_contig63496:107..487+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGCACTTCTGGCACTGTCAGTGACGAACTCCTGCCGGCTTCCGGTGGA
ACTCCCTGACCTGTTCTTTCGGTGGCTCCTGCTTGGTGGTGAAAGTGCAA
CAGTAAAACACAAACATGGGCAACAGCTGTCGCCATCCTGTCATGCGTTC
GAGCCTTCAGTAGAGGACATGGTGGCGCTGGACAAGTCCTTAGAGCGACC
TTTTGAGGCTCTGAAAGACGCTGTACAGTCCGAAGACGCTCTGAAAGGCC
TCTTGGAAATCGAGGACCTGCCGGCTGACACTTCAGCAGCTGACTACATC
ACGTACATGGTGAGGCAGACGTTTTTAGAGCCGGTGCAGTGGCAGATGTC
CGAAGTTCGGGAGGCGTTCTTCCGTACCCTT
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