mRNA_Ecto-sp13_S_contig6342.17095.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6342.17095.1
Unique NamemRNA_Ecto-sp13_S_contig6342.17095.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6342.17095.1 vs. uniprot
Match: A0A6H5KUU1_9PHAE (PIPK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUU1_9PHAE)

HSP 1 Score: 351 bits (900), Expect = 1.310e-106
Identity = 251/315 (79.68%), Postives = 260/315 (82.54%), Query Frame = 3 
Query:  276 MTGAATKAAAAATAVPNAPLSDSAGAGNVAAVEEHRSXXXXXXXXXXXGCICG-----DLTLPAAHPQKVIVEAREERQQPLEEGAAPGTSPAAAAVGIDGNTASGACDDSVDSSGGGGR-AETGEGGTPTDRGRHTNGVSKMTTHPPARPPPVPASAIATKPRLAEWVKAEGQDDDSDVDTANSLRGGSGGSAPSSAGSELSCAXXXXXXXXXXXXARVFPAGAGATPPEAKGPEDVRSERGTPAKGGGERVSTEAGVGGGPEGGGVEAXXXXXXXXXXXXXXXXXXXVAARKLADWIKDGGVDDSEAETSTSG 1202
            MTGAATKAAAAATAVPNAP+SD AGAG+VAAVEE ++               G     DLT PAAH QK IVEA EE QQPLE GAAP TSPAAAAVGI+G+TASGA DDSVDSSGGGG  A+ GEGGTPTDRG HTNGVSKMTTHPPARPPPVPASA ATKPRLAEWVKAEG+DDDSDVDTANSLRGGSGGSAPSSAGSELSCA XXXXXXXXXX   VFPAGAGATPPEA+G ED R ERGTPAKG GERVSTEAGV           XXXXXXXXXXXXXXXXXXXVAARKLADWIKDGG DDSEAETSTSG
Sbjct:    1 MTGAATKAAAAATAVPNAPVSDPAGAGDVAAVEEQQTPNVSGGREHRSSSGDGRGGGRDLTPPAAHLQKGIVEALEESQQPLERGAAPDTSPAAAAVGINGDTASGAYDDSVDSSGGGGGVAKAGEGGTPTDRGGHTNGVSKMTTHPPARPPPVPASATATKPRLAEWVKAEGEDDDSDVDTANSLRGGSGGSAPSSAGSELSCATXXXXXXXXXXG--VFPAGAGATPPEAEGSEDSRGERGTPAKGDGERVSTEAGVXXXXXXX-XXXXXXXXXXXXXXXXXXXXXXVAARKLADWIKDGGADDSEAETSTSG 312
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BLAST of mRNA_Ecto-sp13_S_contig6342.17095.1 vs. uniprot
Match: D8LKC8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKC8_ECTSI)

HSP 1 Score: 162 bits (410), Expect = 3.110e-44
Identity = 118/179 (65.92%), Postives = 122/179 (68.16%), Query Frame = 3 
Query:  684 MTTHPPARPPPVPASAIATKPRLAEWVKAEGQDDDSDVDTANSLRGGSGGSAPSSAGSELSCAXXXXXXXXXXXX-----ARVFPAGAGATPPEAKGPEDVRSERGTPAKGGGERVSTEAGVGGGPEGGGVEAXXXXXXXXXXXXXXXXXXX-VAARKLADWIKDGGVDDSEAETSTSG 1202
            MT HPPARPP  PASA ATKPRLAEWVK EG+DDDSDVDTANSLRGG                XXXXXXXXXXXX     A VFPAGAG TPPEAKG ED+   R TPAKG GERV TEA VGGGP+GG VEA              X     VA+RKLADWIKDGG DDSEAETSTSG
Sbjct:    1 MTMHPPARPPLGPASATATKPRLAEWVKVEGEDDDSDVDTANSLRGGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVFPAGAGTTPPEAKGSEDLGGGRQTPAKGDGERVFTEAEVGGGPKGGVVEAEAREGGGGTAPAAAXPATAAVASRKLADWIKDGGADDSEAETSTSG 179
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6342.17095.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KUU1_9PHAE1.310e-10679.68PIPK domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LKC8_ECTSI3.110e-4465.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6342contigEcto-sp13_S_contig6342:2120..4413 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1205
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-05_001280.1
Cds size930
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463879.0228782-CDS-Ecto-sp13_S_contig6342:2119..30491681463879.0228782-CDS-Ecto-sp13_S_contig6342:2119..3049Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6342 2120..3049 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463879.060787-UTR-Ecto-sp13_S_contig6342:3049..30611681463879.060787-UTR-Ecto-sp13_S_contig6342:3049..3061Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6342 3050..3061 -
1681463879.0736392-UTR-Ecto-sp13_S_contig6342:4150..44131681463879.0736392-UTR-Ecto-sp13_S_contig6342:4150..4413Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6342 4151..4413 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6342.17095.1prot_Ecto-sp13_S_contig6342.17095.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6342 2120..3049 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6342.17095.1

>prot_Ecto-sp13_S_contig6342.17095.1 ID=prot_Ecto-sp13_S_contig6342.17095.1|Name=mRNA_Ecto-sp13_S_contig6342.17095.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=310bp
MTGAATKAAAAATAVPNAPLSDSAGAGNVAAVEEHRSSSSSGDGRGGGGC
ICGDLTLPAAHPQKVIVEAREERQQPLEEGAAPGTSPAAAAVGIDGNTAS
GACDDSVDSSGGGGRAETGEGGTPTDRGRHTNGVSKMTTHPPARPPPVPA
SAIATKPRLAEWVKAEGQDDDSDVDTANSLRGGSGGSAPSSAGSELSCAT
TPAAAAAAAAAARVFPAGAGATPPEAKGPEDVRSERGTPAKGGGERVSTE
AGVGGGPEGGGVEAEASGGGGTATAAAAPAPAPVAARKLADWIKDGGVDD
SEAETSTSG*
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mRNA from alignment at Ecto-sp13_S_contig6342:2120..4413-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6342.17095.1 ID=mRNA_Ecto-sp13_S_contig6342.17095.1|Name=mRNA_Ecto-sp13_S_contig6342.17095.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2294bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6342:2120..4413- (Ectocarpus species13 EcNAP12_S_4_19m)
AAGAACACGTTGATCTGGGGGCGCCGTAGAATGAAAAGCGCATGTTGCAC
ATACCCTGCACGAGAAGGAAACAAAGCATCGTGGACTGGTTGTTGTGGTT
GTTGTTTGAGTTGCGACATAGCAGAGCAGAGACACCGTCCAGTAGGTAGA
AGGAGAGCAGTGGATGGTCCGGCTGCCGCGGCGCACTTTCAAAGACATTA
TTTCAGGAAGAGAGGCGGGCAGCGAGATTCCTGATCAGAGTTGCGAAAGA
GAGAAGACAACGGGTGAGGAAATGACTTTTTTGAGCCCGAGTTCTACTAC
TGCGTCCCCCTGGGGAAGTTCTGTCTCTCTTTCGCTCTCTCAGCCCCTTG
CTTCTGCTGCTGCTGAAACGACCGTTGAACGCTGCACCCACAGCTCTTCT
CTTCGACCATGCTTCCAGCTGTCCTGAACGGCTTGCACTTAGGTATTTCC
GTGCGTGGGGTCCCCCGAGCAGCGCTGAACCCCATCGCTGCCCTTGACAC
ATACGTGCTGTATTTTGTATTTTTGGTCGAATAGACCAAAAAGAACCCGC
TGGGTAAATGTCGCCAGATGCTGACATCACGGCCCACCGCACTGCTGTAA
CTTCGCTGCGGTTATTATTCAAAGCAACTTGTGTGGGGAGGCTCAAGACA
AGCACGGAGACCTATCGCACTAGTGCATAGATTTGTCCACTTTGTTCTAG
GCGGACATCAAGCAGTGATTGAATCTGCCTCGTTCGCTTGGGAGCTTCAA
ACCATCAACATCCGCTCAGGCTGTGGGGAGGCTGGAGTGCCAGGAACATC
AACTCGGCTGCGATCGCAAGGCACTGCTGCAGCACCGTGGCGTCTTGCTT
GGTCCCGTGCCGTGCTTCTCGCATTGCCGCGCGTGATTTTTCCCGTTTCC
GAGACGAATCTCCTCAGTCACCACCACATTCATGCAGCTCAGCTGCCGGC
AGACTCTCTACGAGTCTACGGGGGCGTACCCATTAGTACCCCGCGATTTG
CGACAGCAAGCACGAAAACGTTGACATTAATTTTTGTATAGTGTGCATAC
TGCTGTCCAGCGCTCTTTCATCCTGGACTCTACATCTGTGCGTAGAGATG
AATATATCCAGCAAGTGCATTGGCAAGTGGTTTGTTTTCTGCGAGAAAAA
AAATGCATGAAAAAAAAGAACTCACGGGGAATGAATCAAGTCTACTACAC
AGAGACCGACACGGAGCCTTGCTGAAATGCTTGTGAGCGTGGCATCGACA
CACCCGCGCACAAGCGTACAGTGCATTTCCTCCGCAAAACCAAAATTTAA
ATATGCATGTGCGTAGTACTGAAGAAAATTTTGTCCGCGTCATCCCTTCC
AGCAGCAGCTGCCCATGACAGGGGCGGCGACAAAAGCCGCCGCCGCGGCA
ACGGCTGTTCCCAACGCACCGCTATCGGACTCCGCTGGCGCGGGTAACGT
TGCCGCCGTCGAGGAGCACCGCAGCAGCAGCAGCAGCGGCGACGGCCGTG
GTGGTGGTGGGTGCATTTGTGGTGACCTGACCCTGCCTGCGGCACACCCG
CAGAAAGTCATCGTGGAAGCTCGCGAGGAGAGGCAACAGCCCCTCGAGGA
AGGAGCGGCACCAGGCACATCGCCAGCAGCAGCAGCGGTCGGCATCGATG
GAAACACGGCGTCGGGTGCCTGCGACGATAGCGTCGACAGCAGTGGCGGC
GGGGGGAGAGCGGAGACGGGAGAAGGAGGGACCCCAACAGACCGCGGCAG
GCATACCAACGGCGTGAGCAAAATGACGACGCACCCACCAGCGCGACCCC
CCCCCGTGCCGGCCTCCGCAATCGCTACGAAACCCCGCCTCGCCGAGTGG
GTTAAGGCTGAGGGGCAAGACGACGACAGCGATGTCGACACCGCTAACAG
CCTCCGCGGCGGCAGCGGCGGCAGCGCGCCTAGCAGCGCAGGCTCCGAGT
TGTCTTGCGCCACTACCCCAGCGGCGGCGGCCGCGGCGGCGGCGGCGGCG
AGAGTGTTTCCAGCGGGGGCCGGGGCAACACCGCCGGAAGCTAAAGGGCC
AGAAGACGTGAGGAGCGAAAGAGGGACACCGGCTAAGGGGGGTGGCGAAC
GGGTTTCCACAGAGGCGGGGGTTGGCGGTGGTCCCGAAGGGGGGGGGGTC
GAGGCGGAAGCGAGCGGGGGGGGCGGAACGGCAACAGCGGCCGCCGCGCC
GGCGCCGGCGCCGGTGGCGGCGCGGAAGCTGGCGGACTGGATCAAGGACG
GCGGCGTGGATGACAGCGAGGCCGAGACGAGCACCAGCGGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6342:2120..4413-

>mRNA_Ecto-sp13_S_contig6342.17095.1 ID=mRNA_Ecto-sp13_S_contig6342.17095.1|Name=mRNA_Ecto-sp13_S_contig6342.17095.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=930bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6342:2120..4413- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACAGGGGCGGCGACAAAAGCCGCCGCCGCGGCAACGGCTGTTCCCAA
CGCACCGCTATCGGACTCCGCTGGCGCGGGTAACGTTGCCGCCGTCGAGG
AGCACCGCAGCAGCAGCAGCAGCGGCGACGGCCGTGGTGGTGGTGGGTGC
ATTTGTGGTGACCTGACCCTGCCTGCGGCACACCCGCAGAAAGTCATCGT
GGAAGCTCGCGAGGAGAGGCAACAGCCCCTCGAGGAAGGAGCGGCACCAG
GCACATCGCCAGCAGCAGCAGCGGTCGGCATCGATGGAAACACGGCGTCG
GGTGCCTGCGACGATAGCGTCGACAGCAGTGGCGGCGGGGGGAGAGCGGA
GACGGGAGAAGGAGGGACCCCAACAGACCGCGGCAGGCATACCAACGGCG
TGAGCAAAATGACGACGCACCCACCAGCGCGACCCCCCCCCGTGCCGGCC
TCCGCAATCGCTACGAAACCCCGCCTCGCCGAGTGGGTTAAGGCTGAGGG
GCAAGACGACGACAGCGATGTCGACACCGCTAACAGCCTCCGCGGCGGCA
GCGGCGGCAGCGCGCCTAGCAGCGCAGGCTCCGAGTTGTCTTGCGCCACT
ACCCCAGCGGCGGCGGCCGCGGCGGCGGCGGCGGCGAGAGTGTTTCCAGC
GGGGGCCGGGGCAACACCGCCGGAAGCTAAAGGGCCAGAAGACGTGAGGA
GCGAAAGAGGGACACCGGCTAAGGGGGGTGGCGAACGGGTTTCCACAGAG
GCGGGGGTTGGCGGTGGTCCCGAAGGGGGGGGGGTCGAGGCGGAAGCGAG
CGGGGGGGGCGGAACGGCAACAGCGGCCGCCGCGCCGGCGCCGGCGCCGG
TGGCGGCGCGGAAGCTGGCGGACTGGATCAAGGACGGCGGCGTGGATGAC
AGCGAGGCCGAGACGAGCACCAGCGGGTGA
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