mRNA_Ecto-sp13_S_contig63383.17087.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig63383.17087.1
Unique NamemRNA_Ecto-sp13_S_contig63383.17087.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig63383.17087.1 vs. uniprot
Match: A0A6H5KDU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDU0_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 2.170e-13
Identity = 31/42 (73.81%), Postives = 35/42 (83.33%), Query Frame = 2
Query:   32 TMAQADRKALIALYNGTCGAKWKQKKNWNTGAALSRWEGVNV 157
            TMAQ DRKAL+ALYN T GAKW+ K+NWNT AALS+W GV V
Sbjct:  139 TMAQPDRKALVALYNATGGAKWRNKRNWNTRAALSQWYGVEV 180          
BLAST of mRNA_Ecto-sp13_S_contig63383.17087.1 vs. uniprot
Match: A0A6H5KND6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KND6_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 4.600e-13
Identity = 34/59 (57.63%), Postives = 38/59 (64.41%), Query Frame = 2
Query:   17 GQAPCTMAQADRKALIALYNGTCGAKWKQKKNWNTGAALSRWEGVNVTKGLCFGSVFGL 193
            G    TMAQ DRKAL+ALYN T  AKW+  +NWNT AALS+W GV V    C G V  L
Sbjct:   47 GPLDYTMAQTDRKALVALYNATGRAKWEYTRNWNTSAALSQWHGVEVN---CQGRVVKL 102          
BLAST of mRNA_Ecto-sp13_S_contig63383.17087.1 vs. uniprot
Match: A0A6H5KVC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVC7_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 1.170e-12
Identity = 33/48 (68.75%), Postives = 38/48 (79.17%), Query Frame = 2
Query:   17 GQAPC-TMAQADRKALIALYNGTCGAKWKQKKNWNTGAALSRWEGVNV 157
            G AP  TMAQ DR+AL+ALYN T GAKW+ K+NWNT AALS+W GV V
Sbjct:   89 GSAPYYTMAQPDREALVALYNATGGAKWENKRNWNTRAALSQWYGVEV 136          
BLAST of mRNA_Ecto-sp13_S_contig63383.17087.1 vs. uniprot
Match: D8LFK2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFK2_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 8.370e-12
Identity = 32/50 (64.00%), Postives = 37/50 (74.00%), Query Frame = 2
Query:   11 EVGQAPC-TMAQADRKALIALYNGTCGAKWKQKKNWNTGAALSRWEGVNV 157
            E  +AP  TMAQ DRKAL+ALYN T GA+WK  +NW T AALS+W GV V
Sbjct:   62 EATKAPFYTMAQTDRKALVALYNATGGAEWKNNQNWTTSAALSQWHGVEV 111          
BLAST of mRNA_Ecto-sp13_S_contig63383.17087.1 vs. uniprot
Match: A0A6H5K9V5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9V5_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 5.020e-10
Identity = 25/36 (69.44%), Postives = 29/36 (80.56%), Query Frame = 2
Query:   32 TMAQADRKALIALYNGTCGAKWKQKKNWNTGAALSR 139
            TM Q DRKAL+ALYN T GAKW+  +NWNT AALS+
Sbjct:   18 TMVQTDRKALVALYNATGGAKWEHTRNWNTSAALSQ 53          
BLAST of mRNA_Ecto-sp13_S_contig63383.17087.1 vs. uniprot
Match: A0A352FEI0_9BACT (Uncharacterized protein n=1 Tax=Bacteroidales bacterium TaxID=2030927 RepID=A0A352FEI0_9BACT)

HSP 1 Score: 51.6 bits (122), Expect = 2.170e-6
Identity = 26/52 (50.00%), Postives = 31/52 (59.62%), Query Frame = 2
Query:   14 VGQAPCTMAQADRKALIALYNGTCGAKWKQKKNWN-TGAALSRWEGVNVTKG 166
            +GQA   ++QADR AL+ALYN T G  W    NW  T A +  W GV VT G
Sbjct:   30 IGQA---VSQADRDALMALYNATGGPAWTNHTNWGGTAATVGTWYGVTVTSG 78          
BLAST of mRNA_Ecto-sp13_S_contig63383.17087.1 vs. uniprot
Match: A0A661XQ56_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A661XQ56_9BACT)

HSP 1 Score: 52.8 bits (125), Expect = 5.600e-6
Identity = 22/42 (52.38%), Postives = 25/42 (59.52%), Query Frame = 2
Query:   41 QADRKALIALYNGTCGAKWKQKKNWNTGAALSRWEGVNVTKG 166
            QA+R ALIALYN T G  W    NWNT   ++ W GV V  G
Sbjct:   28 QAERDALIALYNATDGPNWTNHFNWNTATTVNNWHGVTVIDG 69          
BLAST of mRNA_Ecto-sp13_S_contig63383.17087.1 vs. uniprot
Match: A0A7H8PI98_9FLAO (Ig-like domain-containing protein n=1 Tax=Aquimarina sp. TRL1 TaxID=2736252 RepID=A0A7H8PI98_9FLAO)

HSP 1 Score: 52.8 bits (125), Expect = 5.810e-6
Identity = 21/46 (45.65%), Postives = 29/46 (63.04%), Query Frame = 2
Query:   29 CTMAQADRKALIALYNGTCGAKWKQKKNWNTGAALSRWEGVNVTKG 166
            C +++A+++ALI LYN T G  W  + NW T A +  W GV VT G
Sbjct:  988 CVVSEAEKQALIDLYNTTNGTNWTHRTNWLTNAPVCDWYGVTVTNG 1033          
BLAST of mRNA_Ecto-sp13_S_contig63383.17087.1 vs. uniprot
Match: UPI001C889FC9 (T9SS type A sorting domain-containing protein n=1 Tax=Dyadobacter sp. NIV53 TaxID=2861765 RepID=UPI001C889FC9)

HSP 1 Score: 52.0 bits (123), Expect = 1.040e-5
Identity = 20/42 (47.62%), Postives = 27/42 (64.29%), Query Frame = 2
Query:   41 QADRKALIALYNGTCGAKWKQKKNWNTGAALSRWEGVNVTKG 166
            +ADR AL+ LYNGT G +WK + NWNT  +   W G+  + G
Sbjct:   22 EADRAALVKLYNGTNGPQWKNQNNWNTTTSPCGWYGITCSDG 63          
BLAST of mRNA_Ecto-sp13_S_contig63383.17087.1 vs. uniprot
Match: A0A6L7ML79_9CHLR (Uncharacterized protein n=2 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A6L7ML79_9CHLR)

HSP 1 Score: 51.2 bits (121), Expect = 1.700e-5
Identity = 20/37 (54.05%), Postives = 25/37 (67.57%), Query Frame = 2
Query:   47 DRKALIALYNGTCGAKWKQKKNWNTGAALSRWEGVNV 157
            DR+AL+ALYN T GA W++  NW + A L RW GV  
Sbjct:  140 DREALVALYNATGGANWRENTNWLSSAPLGRWYGVKA 176          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig63383.17087.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5KDU0_9PHAE2.170e-1373.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KND6_9PHAE4.600e-1357.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVC7_9PHAE1.170e-1268.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFK2_ECTSI8.370e-1264.00Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5K9V5_9PHAE5.020e-1069.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A352FEI0_9BACT2.170e-650.00Uncharacterized protein n=1 Tax=Bacteroidales bact... [more]
A0A661XQ56_9BACT5.600e-652.38Uncharacterized protein (Fragment) n=1 Tax=Bactero... [more]
A0A7H8PI98_9FLAO5.810e-645.65Ig-like domain-containing protein n=1 Tax=Aquimari... [more]
UPI001C889FC91.040e-547.62T9SS type A sorting domain-containing protein n=1 ... [more]
A0A6L7ML79_9CHLR1.700e-554.05Uncharacterized protein n=2 Tax=Dehalococcoidia ba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig63383contigEcto-sp13_S_contig63383:466..733 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score65.5
Seed ortholog evalue1e-08
Seed eggNOG ortholog2880.D8LFK2
Model size268
Hectar predicted targeting categoryother localisation
Exons1
EggNOG OGs2E19U@1,2S8MQ@2759
Cds size189
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463878.4884577-UTR-Ecto-sp13_S_contig63383:465..4991681463878.4884577-UTR-Ecto-sp13_S_contig63383:465..499Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig63383 466..499 +
1681463878.5136578-UTR-Ecto-sp13_S_contig63383:688..7331681463878.5136578-UTR-Ecto-sp13_S_contig63383:688..733Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig63383 689..733 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463878.5035655-CDS-Ecto-sp13_S_contig63383:499..6881681463878.5035655-CDS-Ecto-sp13_S_contig63383:499..688Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig63383 500..688 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig63383.17087.1prot_Ecto-sp13_S_contig63383.17087.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig63383 500..688 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig63383.17087.1

>prot_Ecto-sp13_S_contig63383.17087.1 ID=prot_Ecto-sp13_S_contig63383.17087.1|Name=mRNA_Ecto-sp13_S_contig63383.17087.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=63bp
MAQADRKALIALYNGTCGAKWKQKKNWNTGAALSRWEGVNVTKGLCFGSV
FGLKQPPRYSKA*
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mRNA from alignment at Ecto-sp13_S_contig63383:466..733+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig63383.17087.1 ID=mRNA_Ecto-sp13_S_contig63383.17087.1|Name=mRNA_Ecto-sp13_S_contig63383.17087.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=268bp|location=Sequence derived from alignment at Ecto-sp13_S_contig63383:466..733+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGAGGTCCCGGAAGTTGGTCAGGCGCCCTGCACAATGGCGCAGGCGGACC GTAAGGCCCTGATTGCCCTATATAACGGGACCTGTGGGGCTAAGTGGAAA CAGAAAAAGAACTGGAACACGGGTGCCGCCCTCTCGCGATGGGAGGGCGT CAACGTCACCAAAGGGCTGTGTTTTGGGTCTGTATTTGGTCTAAAACAAC CTCCAAGGTATTCCAAGGCTTAGAACGTGACGGCGTGCTGCTGTCCTGCG ATGTGCTCCACGCTCGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig63383:466..733+

>mRNA_Ecto-sp13_S_contig63383.17087.1 ID=mRNA_Ecto-sp13_S_contig63383.17087.1|Name=mRNA_Ecto-sp13_S_contig63383.17087.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=189bp|location=Sequence derived from alignment at Ecto-sp13_S_contig63383:466..733+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGCAGGCGGACCGTAAGGCCCTGATTGCCCTATATAACGGGACCTG
TGGGGCTAAGTGGAAACAGAAAAAGAACTGGAACACGGGTGCCGCCCTCT
CGCGATGGGAGGGCGTCAACGTCACCAAAGGGCTGTGTTTTGGGTCTGTA
TTTGGTCTAAAACAACCTCCAAGGTATTCCAAGGCTTAG
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