mRNA_Ecto-sp13_S_contig63383.17087.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig63383.17087.1 vs. uniprot
Match: A0A6H5KDU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDU0_9PHAE) HSP 1 Score: 71.6 bits (174), Expect = 2.170e-13 Identity = 31/42 (73.81%), Postives = 35/42 (83.33%), Query Frame = 2
Query: 32 TMAQADRKALIALYNGTCGAKWKQKKNWNTGAALSRWEGVNV 157
TMAQ DRKAL+ALYN T GAKW+ K+NWNT AALS+W GV V
Sbjct: 139 TMAQPDRKALVALYNATGGAKWRNKRNWNTRAALSQWYGVEV 180
BLAST of mRNA_Ecto-sp13_S_contig63383.17087.1 vs. uniprot
Match: A0A6H5KND6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KND6_9PHAE) HSP 1 Score: 68.6 bits (166), Expect = 4.600e-13 Identity = 34/59 (57.63%), Postives = 38/59 (64.41%), Query Frame = 2
Query: 17 GQAPCTMAQADRKALIALYNGTCGAKWKQKKNWNTGAALSRWEGVNVTKGLCFGSVFGL 193
G TMAQ DRKAL+ALYN T AKW+ +NWNT AALS+W GV V C G V L
Sbjct: 47 GPLDYTMAQTDRKALVALYNATGRAKWEYTRNWNTSAALSQWHGVEVN---CQGRVVKL 102
BLAST of mRNA_Ecto-sp13_S_contig63383.17087.1 vs. uniprot
Match: A0A6H5KVC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVC7_9PHAE) HSP 1 Score: 70.9 bits (172), Expect = 1.170e-12 Identity = 33/48 (68.75%), Postives = 38/48 (79.17%), Query Frame = 2
Query: 17 GQAPC-TMAQADRKALIALYNGTCGAKWKQKKNWNTGAALSRWEGVNV 157
G AP TMAQ DR+AL+ALYN T GAKW+ K+NWNT AALS+W GV V
Sbjct: 89 GSAPYYTMAQPDREALVALYNATGGAKWENKRNWNTRAALSQWYGVEV 136
BLAST of mRNA_Ecto-sp13_S_contig63383.17087.1 vs. uniprot
Match: D8LFK2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFK2_ECTSI) HSP 1 Score: 68.9 bits (167), Expect = 8.370e-12 Identity = 32/50 (64.00%), Postives = 37/50 (74.00%), Query Frame = 2
Query: 11 EVGQAPC-TMAQADRKALIALYNGTCGAKWKQKKNWNTGAALSRWEGVNV 157
E +AP TMAQ DRKAL+ALYN T GA+WK +NW T AALS+W GV V
Sbjct: 62 EATKAPFYTMAQTDRKALVALYNATGGAEWKNNQNWTTSAALSQWHGVEV 111
BLAST of mRNA_Ecto-sp13_S_contig63383.17087.1 vs. uniprot
Match: A0A6H5K9V5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9V5_9PHAE) HSP 1 Score: 59.3 bits (142), Expect = 5.020e-10 Identity = 25/36 (69.44%), Postives = 29/36 (80.56%), Query Frame = 2
Query: 32 TMAQADRKALIALYNGTCGAKWKQKKNWNTGAALSR 139
TM Q DRKAL+ALYN T GAKW+ +NWNT AALS+
Sbjct: 18 TMVQTDRKALVALYNATGGAKWEHTRNWNTSAALSQ 53
BLAST of mRNA_Ecto-sp13_S_contig63383.17087.1 vs. uniprot
Match: A0A352FEI0_9BACT (Uncharacterized protein n=1 Tax=Bacteroidales bacterium TaxID=2030927 RepID=A0A352FEI0_9BACT) HSP 1 Score: 51.6 bits (122), Expect = 2.170e-6 Identity = 26/52 (50.00%), Postives = 31/52 (59.62%), Query Frame = 2
Query: 14 VGQAPCTMAQADRKALIALYNGTCGAKWKQKKNWN-TGAALSRWEGVNVTKG 166
+GQA ++QADR AL+ALYN T G W NW T A + W GV VT G
Sbjct: 30 IGQA---VSQADRDALMALYNATGGPAWTNHTNWGGTAATVGTWYGVTVTSG 78
BLAST of mRNA_Ecto-sp13_S_contig63383.17087.1 vs. uniprot
Match: A0A661XQ56_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A661XQ56_9BACT) HSP 1 Score: 52.8 bits (125), Expect = 5.600e-6 Identity = 22/42 (52.38%), Postives = 25/42 (59.52%), Query Frame = 2
Query: 41 QADRKALIALYNGTCGAKWKQKKNWNTGAALSRWEGVNVTKG 166
QA+R ALIALYN T G W NWNT ++ W GV V G
Sbjct: 28 QAERDALIALYNATDGPNWTNHFNWNTATTVNNWHGVTVIDG 69
BLAST of mRNA_Ecto-sp13_S_contig63383.17087.1 vs. uniprot
Match: A0A7H8PI98_9FLAO (Ig-like domain-containing protein n=1 Tax=Aquimarina sp. TRL1 TaxID=2736252 RepID=A0A7H8PI98_9FLAO) HSP 1 Score: 52.8 bits (125), Expect = 5.810e-6 Identity = 21/46 (45.65%), Postives = 29/46 (63.04%), Query Frame = 2
Query: 29 CTMAQADRKALIALYNGTCGAKWKQKKNWNTGAALSRWEGVNVTKG 166
C +++A+++ALI LYN T G W + NW T A + W GV VT G
Sbjct: 988 CVVSEAEKQALIDLYNTTNGTNWTHRTNWLTNAPVCDWYGVTVTNG 1033
BLAST of mRNA_Ecto-sp13_S_contig63383.17087.1 vs. uniprot
Match: UPI001C889FC9 (T9SS type A sorting domain-containing protein n=1 Tax=Dyadobacter sp. NIV53 TaxID=2861765 RepID=UPI001C889FC9) HSP 1 Score: 52.0 bits (123), Expect = 1.040e-5 Identity = 20/42 (47.62%), Postives = 27/42 (64.29%), Query Frame = 2
Query: 41 QADRKALIALYNGTCGAKWKQKKNWNTGAALSRWEGVNVTKG 166
+ADR AL+ LYNGT G +WK + NWNT + W G+ + G
Sbjct: 22 EADRAALVKLYNGTNGPQWKNQNNWNTTTSPCGWYGITCSDG 63
BLAST of mRNA_Ecto-sp13_S_contig63383.17087.1 vs. uniprot
Match: A0A6L7ML79_9CHLR (Uncharacterized protein n=2 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A6L7ML79_9CHLR) HSP 1 Score: 51.2 bits (121), Expect = 1.700e-5 Identity = 20/37 (54.05%), Postives = 25/37 (67.57%), Query Frame = 2
Query: 47 DRKALIALYNGTCGAKWKQKKNWNTGAALSRWEGVNV 157
DR+AL+ALYN T GA W++ NW + A L RW GV
Sbjct: 140 DREALVALYNATGGANWRENTNWLSSAPLGRWYGVKA 176 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig63383.17087.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig63383.17087.1 >prot_Ecto-sp13_S_contig63383.17087.1 ID=prot_Ecto-sp13_S_contig63383.17087.1|Name=mRNA_Ecto-sp13_S_contig63383.17087.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=63bp MAQADRKALIALYNGTCGAKWKQKKNWNTGAALSRWEGVNVTKGLCFGSVback to top mRNA from alignment at Ecto-sp13_S_contig63383:466..733+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig63383.17087.1 ID=mRNA_Ecto-sp13_S_contig63383.17087.1|Name=mRNA_Ecto-sp13_S_contig63383.17087.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=268bp|location=Sequence derived from alignment at Ecto-sp13_S_contig63383:466..733+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig63383:466..733+ >mRNA_Ecto-sp13_S_contig63383.17087.1 ID=mRNA_Ecto-sp13_S_contig63383.17087.1|Name=mRNA_Ecto-sp13_S_contig63383.17087.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=189bp|location=Sequence derived from alignment at Ecto-sp13_S_contig63383:466..733+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |