mRNA_Ecto-sp13_S_contig6335.17081.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6335.17081.1
Unique NamemRNA_Ecto-sp13_S_contig6335.17081.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6335.17081.1 vs. uniprot
Match: A0A6H5KMH1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMH1_9PHAE)

HSP 1 Score: 481 bits (1238), Expect = 8.110e-164
Identity = 343/446 (76.91%), Postives = 353/446 (79.15%), Query Frame = 1 
Query:   82 SASYGVVGQKRKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTNKXXXXXXXXXXXXXXINNQSSGRRKMAPTSGXXXXXXXXISHAGRQQPQPQYPNGVDPAGRPNSVGSSVSSGMGEWGDSRHDAAGHWPVDHDNPGSIGVVGDGPRLRHTVNRDSSRNFPVGYPFHGEKEMRVGGGPAHMMGGEEVTLLPRHXXXXXXXXXXXXXPQQQLDQHRLNQQRXXXXXXXXXXXXXXXXXXXXXQQXXXXXXXXXXWRGRHEGGTPPAAPPELYRLPQLGEAVPHDVGVPEPATPPPRLSXXXXXXXX-TSAPDDTPSLEKQHTDADSFSRLKPPKAKTEPVEAPSPKRHAGQRGDEVDDKVAG--VDGSEMAGGRKPPGSPAAGGVGGEDVEEDAGAAAFVLRRPRILLPWAARKEGLPPPLLLTNKGWTEWEWQPVIMNIPA 1410
            SASYGVVGQ    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTNKXXXXXXXXXXXXXX NNQSSGRRKMAPTSG        I  AGR Q QPQ+P GVD AGRPNSVGSSVSSGMGEWGDSRHDAAG WPVD  +PGSIGV GDGPRLRHT NRDS+RNFP GYPFHGEKEMRVGGGPAHMMG          XXXXXXXXXXXX  QQQLD+HRLNQ+R                     QQ          WRG HE GT P APPELYRLPQLG+AVPHDVGVPEPATP     XXXXXXX  TS  DDTPSLE+QHTDADS SRL+PP AK+EPVEAPSP+R AGQRGDEVDDK AG  VDGSEMAGGRKPPGSPA   VGG D EEDAGAAAFVLRRPRILLPWAARKEGLPPPLLLTNKGWTEWEWQPV MNIPA
Sbjct:   93 SASYGVVGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTNKXXXXXXXXXXXXXXXNNQSSGRRKMAPTSGVGGEGGVGIGRAGRHQQQPQHPEGVDLAGRPNSVGSSVSSGMGEWGDSRHDAAGDWPVDQHHPGSIGVAGDGPRLRHTANRDSTRNFPAGYPFHGEKEMRVGGGPAHMMGXXXXXXXXXXXXXXXXXXXXXXL-QQQLDRHRLNQRRQH-------------------QQQR--------WRGTHEWGTLPPAPPELYRLPQLGKAVPHDVGVPEPATPSXXXXXXXXXXXRNTSVSDDTPSLEQQHTDADSSSRLEPPIAKSEPVEAPSPERPAGQRGDEVDDKGAGAGVDGSEMAGGRKPPGSPA---VGGTDAEEDAGAAAFVLRRPRILLPWAARKEGLPPPLLLTNKGWTEWEWQPVTMNIPA 507
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BLAST of mRNA_Ecto-sp13_S_contig6335.17081.1 vs. uniprot
Match: D7FWU9_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWU9_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 1.340e-31
Identity = 78/135 (57.78%), Postives = 87/135 (64.44%), Query Frame = 1 
Query: 1024 DDTPSLEKQHTDADSFSRLKPPKAKTEPVEAPSPKRHAGQRGDEVDDKVAGVDGSEMAGGRKPPGSPAAGGVGGEDVEEDAGAAAFVLRRPRILLPWAARKEG------LPPPLLLTNKGWTEWEWQPVIMNIPA 1410
            DDT SL+++HTDADS SRL+PP AK+EPVEAPSP+RHAGQRGDEVDD   GV GSE+AGGRK  GSPAAG V                                     +P PLLLTNKGWTEWEWQPV+MNIPA
Sbjct:  127 DDTSSLQQEHTDADSSSRLRPPLAKSEPVEAPSPERHAGQRGDEVDDNGTGVGGSEVAGGRKRLGSPAAGXVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPXPLLLTNKGWTEWEWQPVMMNIPA 261
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6335.17081.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KMH1_9PHAE8.110e-16476.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWU9_ECTSI1.340e-3157.78EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6335contigEcto-sp13_S_contig6335:4998..6410 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1413
Hectar predicted targeting categoryother localisation
Exons1
Cds size1413
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463878.1714852-CDS-Ecto-sp13_S_contig6335:4997..64101681463878.1714852-CDS-Ecto-sp13_S_contig6335:4997..6410Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6335 4998..6410 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6335.17081.1prot_Ecto-sp13_S_contig6335.17081.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6335 4998..6410 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6335.17081.1

>prot_Ecto-sp13_S_contig6335.17081.1 ID=prot_Ecto-sp13_S_contig6335.17081.1|Name=mRNA_Ecto-sp13_S_contig6335.17081.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=471bp
RRCCAKHAEDGMVKLDKKLCPFKGCFTSASYGVVGQKRKFCAAHAERGMV
SIGGRRCAKEDCSKRANYGVAGTNKREFCAGHAAKGMVNINNQSSGRRKM
APTSGGGGGGGGGISHAGRQQPQPQYPNGVDPAGRPNSVGSSVSSGMGEW
GDSRHDAAGHWPVDHDNPGSIGVVGDGPRLRHTVNRDSSRNFPVGYPFHG
EKEMRVGGGPAHMMGGEEVTLLPRHYQQQRQQQRQQHHPQQQLDQHRLNQ
QRHQHQHQLHQHQLEHQRQVHQHQQQQQQQQQQQRWRGRHEGGTPPAAPP
ELYRLPQLGEAVPHDVGVPEPATPPPRLSSPPPPPRKTSAPDDTPSLEKQ
HTDADSFSRLKPPKAKTEPVEAPSPKRHAGQRGDEVDDKVAGVDGSEMAG
GRKPPGSPAAGGVGGEDVEEDAGAAAFVLRRPRILLPWAARKEGLPPPLL
LTNKGWTEWEWQPVIMNIPA*
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mRNA from alignment at Ecto-sp13_S_contig6335:4998..6410-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6335.17081.1 ID=mRNA_Ecto-sp13_S_contig6335.17081.1|Name=mRNA_Ecto-sp13_S_contig6335.17081.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1413bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6335:4998..6410- (Ectocarpus species13 EcNAP12_S_4_19m)
CGCAGGTGCTGCGCGAAGCACGCGGAGGACGGCATGGTGAAGCTCGACAA
GAAGCTGTGCCCGTTCAAGGGGTGCTTCACCTCCGCCTCCTACGGCGTCG
TTGGCCAGAAGAGGAAGTTCTGCGCCGCCCACGCGGAGCGAGGAATGGTG
TCCATCGGCGGCCGTAGGTGCGCCAAGGAGGACTGCAGCAAGCGGGCCAA
CTACGGCGTCGCGGGCACCAACAAGCGGGAGTTCTGCGCCGGCCACGCGG
CCAAGGGGATGGTGAACATCAACAATCAGAGCAGCGGGCGGAGGAAAATG
GCGCCCACCTCGGGGGGGGGAGGGGGGGGGGGGGGGGGCATCAGCCATGC
AGGCAGGCAGCAGCCGCAGCCGCAGTACCCCAACGGCGTCGACCCCGCCG
GTCGACCGAATTCCGTGGGGTCCTCGGTTTCCTCCGGGATGGGAGAGTGG
GGGGATTCGCGGCACGATGCCGCCGGTCATTGGCCAGTAGATCATGACAA
CCCCGGCAGCATAGGCGTAGTAGGCGATGGCCCTCGTCTTCGCCACACGG
TGAATCGCGACAGTAGCCGGAATTTCCCCGTGGGTTATCCGTTTCACGGC
GAGAAGGAGATGCGGGTCGGCGGGGGACCCGCCCACATGATGGGCGGCGA
AGAAGTAACACTACTACCGCGCCACTACCAGCAGCAGCGGCAGCAGCAGC
GGCAGCAGCATCACCCACAACAGCAGCTCGATCAGCATCGACTGAATCAA
CAGCGGCACCAGCACCAGCATCAACTGCACCAACATCAGCTGGAGCACCA
GCGGCAGGTGCACCAACATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCGGTGGCGGGGAAGGCACGAGGGGGGCACGCCCCCCGCTGCTCCTCCC
GAGCTGTACAGGCTCCCCCAGCTCGGCGAGGCCGTTCCGCACGACGTTGG
TGTACCAGAACCAGCCACCCCGCCCCCCCGGTTGTCGTCGCCGCCGCCGC
CGCCCAGGAAGACCTCGGCTCCAGACGATACCCCTTCGTTGGAAAAACAG
CACACGGACGCCGACTCGTTTTCCCGACTAAAACCGCCTAAAGCCAAGAC
CGAACCGGTGGAAGCACCTAGTCCCAAGAGGCATGCCGGGCAACGAGGGG
ACGAGGTCGACGATAAGGTTGCCGGGGTTGATGGATCCGAGATGGCGGGG
GGCAGAAAGCCACCGGGCTCGCCGGCAGCGGGGGGGGTGGGGGGTGAGGA
CGTCGAGGAGGACGCCGGGGCGGCGGCGTTCGTTTTGAGGCGGCCGAGGA
TTTTGCTGCCGTGGGCGGCCAGGAAGGAGGGCCTTCCCCCCCCGCTGTTA
CTCACCAACAAGGGGTGGACTGAGTGGGAGTGGCAGCCGGTGATCATGAA
CATTCCGGCCTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6335:4998..6410-

>mRNA_Ecto-sp13_S_contig6335.17081.1 ID=mRNA_Ecto-sp13_S_contig6335.17081.1|Name=mRNA_Ecto-sp13_S_contig6335.17081.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1413bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6335:4998..6410- (Ectocarpus species13 EcNAP12_S_4_19m)
CGCAGGTGCTGCGCGAAGCACGCGGAGGACGGCATGGTGAAGCTCGACAA
GAAGCTGTGCCCGTTCAAGGGGTGCTTCACCTCCGCCTCCTACGGCGTCG
TTGGCCAGAAGAGGAAGTTCTGCGCCGCCCACGCGGAGCGAGGAATGGTG
TCCATCGGCGGCCGTAGGTGCGCCAAGGAGGACTGCAGCAAGCGGGCCAA
CTACGGCGTCGCGGGCACCAACAAGCGGGAGTTCTGCGCCGGCCACGCGG
CCAAGGGGATGGTGAACATCAACAATCAGAGCAGCGGGCGGAGGAAAATG
GCGCCCACCTCGGGGGGGGGAGGGGGGGGGGGGGGGGGCATCAGCCATGC
AGGCAGGCAGCAGCCGCAGCCGCAGTACCCCAACGGCGTCGACCCCGCCG
GTCGACCGAATTCCGTGGGGTCCTCGGTTTCCTCCGGGATGGGAGAGTGG
GGGGATTCGCGGCACGATGCCGCCGGTCATTGGCCAGTAGATCATGACAA
CCCCGGCAGCATAGGCGTAGTAGGCGATGGCCCTCGTCTTCGCCACACGG
TGAATCGCGACAGTAGCCGGAATTTCCCCGTGGGTTATCCGTTTCACGGC
GAGAAGGAGATGCGGGTCGGCGGGGGACCCGCCCACATGATGGGCGGCGA
AGAAGTAACACTACTACCGCGCCACTACCAGCAGCAGCGGCAGCAGCAGC
GGCAGCAGCATCACCCACAACAGCAGCTCGATCAGCATCGACTGAATCAA
CAGCGGCACCAGCACCAGCATCAACTGCACCAACATCAGCTGGAGCACCA
GCGGCAGGTGCACCAACATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCGGTGGCGGGGAAGGCACGAGGGGGGCACGCCCCCCGCTGCTCCTCCC
GAGCTGTACAGGCTCCCCCAGCTCGGCGAGGCCGTTCCGCACGACGTTGG
TGTACCAGAACCAGCCACCCCGCCCCCCCGGTTGTCGTCGCCGCCGCCGC
CGCCCAGGAAGACCTCGGCTCCAGACGATACCCCTTCGTTGGAAAAACAG
CACACGGACGCCGACTCGTTTTCCCGACTAAAACCGCCTAAAGCCAAGAC
CGAACCGGTGGAAGCACCTAGTCCCAAGAGGCATGCCGGGCAACGAGGGG
ACGAGGTCGACGATAAGGTTGCCGGGGTTGATGGATCCGAGATGGCGGGG
GGCAGAAAGCCACCGGGCTCGCCGGCAGCGGGGGGGGTGGGGGGTGAGGA
CGTCGAGGAGGACGCCGGGGCGGCGGCGTTCGTTTTGAGGCGGCCGAGGA
TTTTGCTGCCGTGGGCGGCCAGGAAGGAGGGCCTTCCCCCCCCGCTGTTA
CTCACCAACAAGGGGTGGACTGAGTGGGAGTGGCAGCCGGTGATCATGAA
CATTCCGGCCTAA
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