mRNA_Ecto-sp13_S_contig6320.17066.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6320.17066.1
Unique NamemRNA_Ecto-sp13_S_contig6320.17066.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6320.17066.1 vs. uniprot
Match: D7G7Z1_ECTSI (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Z1_ECTSI)

HSP 1 Score: 385 bits (990), Expect = 9.460e-133
Identity = 250/255 (98.04%), Postives = 251/255 (98.43%), Query Frame = 1 
Query:    1 QVFSAYGEISKLLLQTNEESKTQRAVLVFADVAGATSALQANGRDILGANCSVSLASSMPALNDGLDRDNVSDQPAAVGGMEGRTLTTAEWIKGIFAQGMVYTRLFDEKLGVSSTAKSIAAKVQTQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETASKWAHSAKESTDKALESNPRVAAGVHQAGDAIGSLVKSVSGLAHQAMGQPQEMAGPVPP---SAVPANTAGGTLGISESDTSAGAPPTKPV 756
            QVFSAYGEISKLLLQTNEES+TQRAVLVFADVAGATSALQANGRDILGANCSVSLASSMPALNDGLDRDNVSDQPAAVGGMEGRTLTTAEWIKGIFAQGMVYTRLFDEKLGVSSTAKSIAAKVQTQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETASKWAHSAKESTDKALESNPRVAAGVHQAGDAIGSLVKSVSGLAHQAMGQPQEMAGPVPP   SAVPANTAGGT GISESDTSAGAPPTKPV
Sbjct:   52 QVFSAYGEISKLLLQTNEESRTQRAVLVFADVAGATSALQANGRDILGANCSVSLASSMPALNDGLDRDNVSDQPAAVGGMEGRTLTTAEWIKGIFAQGMVYTRLFDEKLGVSSTAKSIAAKVQTQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETASKWAHSAKESTDKALESNPRVAAGVHQAGDAIGSLVKSVSGLAHQAMGQPQEMAGPVPPVPPSAVPANTAGGTFGISESDTSAGAPPTKPV 306
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BLAST of mRNA_Ecto-sp13_S_contig6320.17066.1 vs. uniprot
Match: A0A6H5JE69_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE69_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 4.290e-20
Identity = 55/96 (57.29%), Postives = 70/96 (72.92%), Query Frame = 1 
Query:    1 QVFSAYGEISKLLLQTNEESKTQRAVLVFADVAGATSALQANGRDILGANCSVSLASSMPALNDGLDRDNVSDQPAAVGGMEGRTLTTAEWIKGIF 288
            +VFS YG +S+LLLQT   S+TQRA++VFA+ AGAT+ALQ N RDILGA+CSV L+S++   N+  DR NV     A G + G T TTAEWI+ IF
Sbjct:  182 EVFSVYGRVSRLLLQTIRLSQTQRALVVFAESAGATAALQQNDRDILGASCSVCLSSTLAGSNERFDRYNVHWMGEAEGALSGGTPTTAEWIQLIF 277
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6320.17066.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7Z1_ECTSI9.460e-13398.04RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A6H5JE69_9PHAE4.290e-2057.29Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6320contigEcto-sp13_S_contig6320:3200..7886 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size759
Hectar predicted targeting categoryother localisation
Exons7
Ec32 ortholog descriptionRNA recognition motif domain
Ec32 orthologEc-06_009520.1
Cds size759
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6320.17066.1prot_Ecto-sp13_S_contig6320.17066.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6320 3200..7886 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463876.8399973-CDS-Ecto-sp13_S_contig6320:3199..34271681463876.8399973-CDS-Ecto-sp13_S_contig6320:3199..3427Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6320 3200..3427 -
1681463876.8622925-CDS-Ecto-sp13_S_contig6320:4213..42741681463876.8622925-CDS-Ecto-sp13_S_contig6320:4213..4274Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6320 4214..4274 -
1681463876.877848-CDS-Ecto-sp13_S_contig6320:5257..53611681463876.877848-CDS-Ecto-sp13_S_contig6320:5257..5361Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6320 5258..5361 -
1681463876.888572-CDS-Ecto-sp13_S_contig6320:5874..60051681463876.888572-CDS-Ecto-sp13_S_contig6320:5874..6005Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6320 5875..6005 -
1681463876.9002886-CDS-Ecto-sp13_S_contig6320:6524..66391681463876.9002886-CDS-Ecto-sp13_S_contig6320:6524..6639Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6320 6525..6639 -
1681463876.9108346-CDS-Ecto-sp13_S_contig6320:7252..73141681463876.9108346-CDS-Ecto-sp13_S_contig6320:7252..7314Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6320 7253..7314 -
1681463876.919611-CDS-Ecto-sp13_S_contig6320:7828..78861681463876.919611-CDS-Ecto-sp13_S_contig6320:7828..7886Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6320 7829..7886 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6320.17066.1

>prot_Ecto-sp13_S_contig6320.17066.1 ID=prot_Ecto-sp13_S_contig6320.17066.1|Name=mRNA_Ecto-sp13_S_contig6320.17066.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=253bp
QVFSAYGEISKLLLQTNEESKTQRAVLVFADVAGATSALQANGRDILGAN
CSVSLASSMPALNDGLDRDNVSDQPAAVGGMEGRTLTTAEWIKGIFAQGM
VYTRLFDEKLGVSSTAKSIAAKVQTQVEQIDEKHNVSGKLAAVAFTAQAK
VQEVNTKLKVSETASKWAHSAKESTDKALESNPRVAAGVHQAGDAIGSLV
KSVSGLAHQAMGQPQEMAGPVPPSAVPANTAGGTLGISESDTSAGAPPTK
PV*
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mRNA from alignment at Ecto-sp13_S_contig6320:3200..7886-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6320.17066.1 ID=mRNA_Ecto-sp13_S_contig6320.17066.1|Name=mRNA_Ecto-sp13_S_contig6320.17066.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4687bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6320:3200..7886- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTCTTCTCGGCGTACGGTGAAATCTCCAAGCTTCTCCTTCAGACGAA
CGAAGAAAGTGAGTGCTGCGCACTACGAATTGTGCACGCTGGTCAGCAGA
GGAAATCGCGCCAGGAGTGTGATCCACCTCTTGCAGACGAAGAGAAGACG
TGCTATGTAGGAACACCCGGAGACATGAGGGCTGGTCAACAGGGTTTGTA
TTTTTTTCGCGCAGAAAGAACGTAACATTTACAGACGAACAAGAAGACGT
GCTGTGCAGGGACACCCAGGAGAGATGAAGGCTGATGAGCAGGAAAAATC
ACGCACCGCTCTCTGATGTGTCTGTTGCCGGAGAGTAGTAGCGCTGTAAT
TCCCAAGTTTCGCTAGAGACAGCAGCAGTACAGCATGCCACGCTCTGCAG
AAGGGAAATTCTTGCAGCCTTTCGCGCGGGCACCGGGGTTCAGTTTGGGC
ACACATCTTTAGCAGCTCACGTTCGCGTCGCCACCTACCAGATGTACCGT
CGCCATAGGCTGTGGATTGTGTCGCGGGACTCATCTAAATTCCTTCGAAC
CCGCGTTCTCTCCTGGTTGCAGGTAAAACGCAGAGGGCTGTGCTGGTTTT
CGCCGATGTAGCCGGTGCTACCTCTGCTCTGCAGGTATGACGGTTGCCCC
TGTGGGGCGCTGTTTCCAACCAACGCCGGTCTCTACGGATACGTATTTGG
TTTACCAGCGTGCTTCGGCAAGCGTGCTAAATAGTCGTATTTTTAGGTTT
CCGGGGACGGCAGTGTTTCGTCATGATTGGGGCGCGAGACGGCGGGGTAG
CAGGGTGGAGATTGCCTGTCTCTACGTTCACATAATTGGACGATTTCAAG
ATTTATCATTACACGAGCGCCACGCGTAGATCTTTTGTGCGCCGATGTCA
ACCATTGTGTCGTTCTCGCATAGACAAGGGCTCAGCGTTCCCAAGAAAAC
AAGCAGTGCAGTCGACCCGTCGACCGTTCGTGAGAGAAGAGTCGTGATGT
TGATGACCGAGCTTCATAGTCACCGCACGCCGCGCGTATTTTTCGTTGGA
CAGCAGTCCTCCACCGCTGTTTCTTTTGTTGTTGATTGCTGCGTTGGAAT
ACCGATGTCGGCCGATCGAACCGCCGTGGCGTCTGGTTCTCTTGTTGGCA
TCTTTTTCCCTGGCCTCTCTTTATTTTCCCACACACCCTGCCGCTGATGT
TACCGTCGGGTGCTGCCATCGTTCTCCGCTGCACCGGTGCTGATAAGGCG
AACGGCCGCGACATTCTCGGAGCGAACTGCAGCGTAAGCTTGGCTTCGTC
CATGCCGGCCTTGAACGACGGGTTGGACCGCGACAATGTTAGCGATCAGC
CTGCCGCTGTGGGTGAGGTCTGGCTAACCTTCCTACCCTGCTCTCCGTAG
TCGTATTCAACGCCTCGCATGCAAGCTCCCCACGACGTGTTTTTTTCAAC
GTGGGGAGGGTGTCAACACACGCGCGAGAGATTTTTTTTTTTTCTCTTGA
GACTCGCCGAGCTATGAATCGTCGATCGAAAGATTACGTAGAAGGCACGG
GGCCGAAGATGGTAGCGCGCCGGCAACATGAACCCCTGTTGGTCGCCGTG
CGTCCTTTTCTCGAAGTGCATCCATTCGGGTACACTGGTTAACTACCCCA
CAGACTGAGCCCCCTTCTTGTGCTTTGTGTCCGGTTTTTCGTTTTTTTTT
GTTCTTGAAGAGAAGGCGTGCACCCGTTCGTCAGACTTGTTGCGGCACGA
TGAACAGCTGTGTCTCATGTGCGTTTTGGAGTGTGACTACTTTGACACCG
CTGTTTCTCCACTATCCGTTACCCATTCGTTTTTTTTGGCCTTCTTACGT
GGTATTTGATTTGGTTTTGACTGCATAATAGGTGGTATGGAAGGCCGAAC
GCTGACCACGGCAGAATGGATCAAGGGCATCTTCGCCCAGGGCATGGTGT
ACACCCGCTTGTTCGACGAGAAACTCGGCGTCTCCTCGACCGCGAAAAGT
ATCGCAGCAAAGGTGAGGGCTGGTTGCCGGCTGGCTTGGATGTTCAGTCG
CTGGAATCTCTTTCGTGACAGCGCAGAGGCGGCGAGATTGGCGCCCTTCC
GCGTCGTTCGTCGTTTTTTGGTTTTAAACGAAATTGTATCGGGAACATTC
GTGTGATGGACGCACACTTGTTGGCTGTAGTAGGTGGCCCGATATAGTGG
TATGTAGGGGCAAGAGGAGTTTATGAAACTGTTCAGGGCAGTGCCACTAT
TCGATACATCGGGTTCATGTACATGTTGAGATTGTGACACGAGATTTTGA
TGCCGCTACATCGGTAGTTCAGCTACTCAAGTGGCCACCTATATCGGGCC
ACCTACCGTAGTGAAAGACGAAAAAAGGACAGATTTCTGAAGAAAGCATC
TCTTCCAGCACGGATAACGAATCGCATTTTTTCAGAGTGCATGTTCTTTT
CAGCGACCACAAACAAGCTTAATCCTTGGTCTACTTGCTGCTGTTTGTCG
TTCGTCGCCGGTGTTTGCTGTTCAGGTGCAAACCCAGGTAGAGCAAATAG
ACGAGAAGCACAACGTGAGCGGCAAACTCGCTGCGGTTGCCTTCACCGCG
CAGGCGAAGGTCCAAGAGGTCAACACCAAGTGAGTCGCCAGGTTCCCTTT
CGCTTTGTACTCGTCCGCGTAGTGACTCGACATGGTCAGCAGTGGGAGGG
GGGAGAGGGGTGCGTTTTTGTCCCGGCCGTCCCGGCTGCGGACATGGCCT
ATCATGGCTTTTTCGATGGCGGTAGGCTTAATCCTCTCACCACGGGGTTG
GTGAGACCTGACGCGCGGTGCGACTCGTCTATAGCTGTTGTTTCGGACAT
GGGATATATTACAGTTACCCTGGGATGTGAAAAGAGGGAGTCGTCCTCGA
CAGACGCTGGGAGACTGAGGCTTTTATGAAGGTGATCTCCGCGCTACTCC
CCTCCCCTGTTTGAGTCCTCTTTGGTTGCTATTAGAGGCAAGAAGGCTTC
TCAGGGTAACCGGAACCCGCCCGGCTGGCGGCGAGTCGATTTCACTTCTC
ACCAATATTCTGTGCGTGATTACCCCGGTTCACTACGTCCGGCACGTCAC
CGTACAAGTTCCACGAGTTCGAAACTCTATACTTTGGTCCCCCACCATTT
TTTCCGGCGTTTTTTTACACAAAAAGATGGCGGGTGGCGGATTCGAACTC
GGGTTTTCTTCCGCCAATAACAGGCATTTCTTCGTCGACGCCAATGTGAA
AAGAGGGAATCGCTCTCGACCAGCCGGCCCTCCCTCTCGCTACTACGGCC
CTGGCGGTCGCTGTTGTCACCCGTACGCTCGGGTTCCGGCTCGTTTACGG
AACCATCTCCACGTCGACGTCGACGTGGAGATGACACGGAGATGTTTCCG
AATACGAGCCGGACTCCGAGAGTACCGGTAACGAGAGCGACCGCCAGGAC
GGTAATAGCGAGGAGGAGGGCCAGCTGGTTGAGGACAATTGATTCCCTCT
TGTCACAAGGGAGAGTCGAAGCGGATGTTGTTTGTATCATGATTTTCTTT
TTTTTTGTCCCAAGGATCGCCCCCCGCCGCTTCTTGTGTGTCGGGGTTGC
CCTACGGTGCAGGCTCAAGGTGTCTGAGACCGCGTCGAAGTGGGCACACT
CAGCCAAGGAATCCACCGATAAGGTGAAGCCGTTGGTCTTGCTCTCGTGC
CAATTGTGTCGTTTTTCTCCCCCACCCGCGGAAAAAATGTCGCGCGCAGA
GCGGCGTCGACGCCTGTGGCCCCCGCTGGCGGCACTGCTGATGGATTGCT
CGACCTGCTGTGCGAACTATTGTTTTTCGAATTACCCTCCTCTGATTGCA
GTCCGAATGCACCAGCCTCTCTCTTGTGCGTTCCTCGCCCTCCGTCTTCT
CCTTCTCTCTCCCGTTCCACCCCCGTTGCTGTATTTTTGCTGACCCGCGA
TGTACCCCCCTTGCCTGTGGGAGGGGAGCAAAACCGGCTGCTGTGTCAAC
CTTTTTTATCGTCGAGTAAAAAGTGGGTGTTCGTTCTTTTTTGCCTCTGG
CGGGCTAGACACGATATAGCCCTTTCGGCCATCACGCTTTCCCGACAGTT
CGGTGGTAATGGATGGGTTAGCGGTTCGACGCATCCTCTCGGTTGCTCAG
AGTAATTATGTTGGAACAGAGTGGCCTCCGTGCTATAATCACGGTTTACT
TGGGATTAGACTGATCGGGTTTGTTAGTTTCCTGAATGAACGCTTGTAAA
CGCTAGATGCGATTGGGCAAAGCGCACCAAGACACCGAGTAGAATGCTGG
AGGTCCTGTTTTCGCCATGCAGTCCTGCTCGGAGTGGAAAGAGACTACGA
ACACGAGAACTGACATGTACGTACAGTAAGTACACCACGCACACCGCAAC
TGCTAGTAGGCCAGGCTCACGCTCCGCATCGTGCCCCTATCCGCACCCTG
TAACATCAGGCCCTCGAGAGCAACCCCCGCGTCGCCGCTGGCGTCCACCA
AGCGGGAGACGCCATCGGCAGCCTCGTAAAAAGCGTAAGCGGGTTGGCGC
ACCAGGCCATGGGGCAGCCGCAGGAGATGGCAGGCCCGGTACCCCCGTCC
GCAGTTCCGGCAAACACCGCCGGCGGGACCCTCGGGATTTCGGAGTCGGA
CACGAGCGCGGGGGCCCCGCCGACGAAGCCCGTCTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6320:3200..7886-

>mRNA_Ecto-sp13_S_contig6320.17066.1 ID=mRNA_Ecto-sp13_S_contig6320.17066.1|Name=mRNA_Ecto-sp13_S_contig6320.17066.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=759bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6320:3200..7886- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTCTTCTCGGCGTACGGTGAAATCTCCAAGCTTCTCCTTCAGACGAA
CGAAGAAAGTAAAACGCAGAGGGCTGTGCTGGTTTTCGCCGATGTAGCCG
GTGCTACCTCTGCTCTGCAGGCGAACGGCCGCGACATTCTCGGAGCGAAC
TGCAGCGTAAGCTTGGCTTCGTCCATGCCGGCCTTGAACGACGGGTTGGA
CCGCGACAATGTTAGCGATCAGCCTGCCGCTGTGGGTGGTATGGAAGGCC
GAACGCTGACCACGGCAGAATGGATCAAGGGCATCTTCGCCCAGGGCATG
GTGTACACCCGCTTGTTCGACGAGAAACTCGGCGTCTCCTCGACCGCGAA
AAGTATCGCAGCAAAGGTGCAAACCCAGGTAGAGCAAATAGACGAGAAGC
ACAACGTGAGCGGCAAACTCGCTGCGGTTGCCTTCACCGCGCAGGCGAAG
GTCCAAGAGGTCAACACCAAGCTCAAGGTGTCTGAGACCGCGTCGAAGTG
GGCACACTCAGCCAAGGAATCCACCGATAAGGCCCTCGAGAGCAACCCCC
GCGTCGCCGCTGGCGTCCACCAAGCGGGAGACGCCATCGGCAGCCTCGTA
AAAAGCGTAAGCGGGTTGGCGCACCAGGCCATGGGGCAGCCGCAGGAGAT
GGCAGGCCCGGTACCCCCGTCCGCAGTTCCGGCAAACACCGCCGGCGGGA
CCCTCGGGATTTCGGAGTCGGACACGAGCGCGGGGGCCCCGCCGACGAAG
CCCGTCTAA
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