prot_Ecto-sp13_S_contig6320.17066.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig6320.17066.1
Unique Nameprot_Ecto-sp13_S_contig6320.17066.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length253
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6320.17066.1 vs. uniprot
Match: D7G7Z1_ECTSI (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Z1_ECTSI)

HSP 1 Score: 385 bits (990), Expect = 9.460e-133
Identity = 250/255 (98.04%), Postives = 251/255 (98.43%), Query Frame = 0 
Query:    1 QVFSAYGEISKLLLQTNEESKTQRAVLVFADVAGATSALQANGRDILGANCSVSLASSMPALNDGLDRDNVSDQPAAVGGMEGRTLTTAEWIKGIFAQGMVYTRLFDEKLGVSSTAKSIAAKVQTQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETASKWAHSAKESTDKALESNPRVAAGVHQAGDAIGSLVKSVSGLAHQAMGQPQEMAGPVPP---SAVPANTAGGTLGISESDTSAGAPPTKPV 252
            QVFSAYGEISKLLLQTNEES+TQRAVLVFADVAGATSALQANGRDILGANCSVSLASSMPALNDGLDRDNVSDQPAAVGGMEGRTLTTAEWIKGIFAQGMVYTRLFDEKLGVSSTAKSIAAKVQTQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETASKWAHSAKESTDKALESNPRVAAGVHQAGDAIGSLVKSVSGLAHQAMGQPQEMAGPVPP   SAVPANTAGGT GISESDTSAGAPPTKPV
Sbjct:   52 QVFSAYGEISKLLLQTNEESRTQRAVLVFADVAGATSALQANGRDILGANCSVSLASSMPALNDGLDRDNVSDQPAAVGGMEGRTLTTAEWIKGIFAQGMVYTRLFDEKLGVSSTAKSIAAKVQTQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETASKWAHSAKESTDKALESNPRVAAGVHQAGDAIGSLVKSVSGLAHQAMGQPQEMAGPVPPVPPSAVPANTAGGTFGISESDTSAGAPPTKPV 306
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6320.17066.1 vs. uniprot
Match: A0A6H5JE69_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE69_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 4.290e-20
Identity = 55/96 (57.29%), Postives = 70/96 (72.92%), Query Frame = 0 
Query:    1 QVFSAYGEISKLLLQTNEESKTQRAVLVFADVAGATSALQANGRDILGANCSVSLASSMPALNDGLDRDNVSDQPAAVGGMEGRTLTTAEWIKGIF 96
            +VFS YG +S+LLLQT   S+TQRA++VFA+ AGAT+ALQ N RDILGA+CSV L+S++   N+  DR NV     A G + G T TTAEWI+ IF
Sbjct:  182 EVFSVYGRVSRLLLQTIRLSQTQRALVVFAESAGATAALQQNDRDILGASCSVCLSSTLAGSNERFDRYNVHWMGEAEGALSGGTPTTAEWIQLIF 277
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6320.17066.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7Z1_ECTSI9.460e-13398.04RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A6H5JE69_9PHAE4.290e-2057.29Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 1..57

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6320contigEcto-sp13_S_contig6320:3200..7886 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6320.17066.1mRNA_Ecto-sp13_S_contig6320.17066.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig6320 3200..7886 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig6320.17066.1 ID=prot_Ecto-sp13_S_contig6320.17066.1|Name=mRNA_Ecto-sp13_S_contig6320.17066.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=253bp
QVFSAYGEISKLLLQTNEESKTQRAVLVFADVAGATSALQANGRDILGAN
CSVSLASSMPALNDGLDRDNVSDQPAAVGGMEGRTLTTAEWIKGIFAQGM
VYTRLFDEKLGVSSTAKSIAAKVQTQVEQIDEKHNVSGKLAAVAFTAQAK
VQEVNTKLKVSETASKWAHSAKESTDKALESNPRVAAGVHQAGDAIGSLV
KSVSGLAHQAMGQPQEMAGPVPPSAVPANTAGGTLGISESDTSAGAPPTK
PV*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf