mRNA_Ecto-sp13_S_contig63135.17056.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig63135.17056.1
Unique NamemRNA_Ecto-sp13_S_contig63135.17056.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig63135.17056.1 vs. uniprot
Match: A0A6H5JP76_9PHAE (Bromo domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JP76_9PHAE)

HSP 1 Score: 198 bits (504), Expect = 2.080e-61
Identity = 104/112 (92.86%), Postives = 110/112 (98.21%), Query Frame = 1 
Query:    4 PSRSRQAKQVAKQAMKRQRPSSDNEEGEMASASGFSSSASAAAPLSQDAKSLVKPLISRLVAMKWPSGWGNPFTTVFKKSNAPPRYFEFIKRPMNLTFIRDNLNKNKYTTVS 339
            P+ +R+AKQVAKQAMKRQRPSSDN EGEMASASG+SSSASAAAPLSQ+AKSLVKPLISRLVAMKWPSGWGNPFTTVFKKSNAPPRYFEFIKRPMNLTFIRDNLNKNKYTTV+
Sbjct:  126 PAFARKAKQVAKQAMKRQRPSSDNGEGEMASASGYSSSASAAAPLSQEAKSLVKPLISRLVAMKWPSGWGNPFTTVFKKSNAPPRYFEFIKRPMNLTFIRDNLNKNKYTTVA 237
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BLAST of mRNA_Ecto-sp13_S_contig63135.17056.1 vs. uniprot
Match: A0A7S2V5Q0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5Q0_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.630e-8
Identity = 28/76 (36.84%), Postives = 47/76 (61.84%), Query Frame = 1 
Query:  121 SAAAPLSQDAKSLVKPLISRLVAMKWPSGWGNPFTTVFKKSNAPP----RYFEFIKRPMNLTFIRDNLNKNKYTTV 336
            SA  P +   + +++P+++ L  M +   WGNPF TV  + N        YF+FI+RPMNLT+I++ +N  KY+++
Sbjct:  217 SAPLPRADQVQKVLRPVVNSLWKMNFGGQWGNPFRTVIDQENCVALGVANYFDFIERPMNLTWIKEKMNSKKYSSL 292
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BLAST of mRNA_Ecto-sp13_S_contig63135.17056.1 vs. uniprot
Match: A0A836CA18_9STRA (Bromodomain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA18_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 9.120e-8
Identity = 28/69 (40.58%), Postives = 36/69 (52.17%), Query Frame = 1 
Query:  145 DAKSLVKPLISRLVAMKWPSGWGNPFTTVFKKSNAP----PRYFEFIKRPMNLTFIRDNLNKNKYTTVS 339
            D    + PL  RL  M +   WGNPFT V     A     P YF F+K PMNLT++RD L   +Y  ++
Sbjct:  172 DVSDALTPLHQRLTRMSFGKAWGNPFTQVITPETAAALRVPNYFNFVKEPMNLTWMRDKLRGAEYAAIA 240
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BLAST of mRNA_Ecto-sp13_S_contig63135.17056.1 vs. uniprot
Match: A0A7S3Y7Q8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y7Q8_HETAK)

HSP 1 Score: 51.6 bits (122), Expect = 2.210e-5
Identity = 27/75 (36.00%), Postives = 41/75 (54.67%), Query Frame = 1 
Query:  130 APLSQDAKSLVKPLISRLVAMK---WPSGWGNPFTTVFKKSNAP----PRYFEFIKRPMNLTFIRDNLNKNKYTT 333
            AP+       +K +++ L   K   W +G G+PF  V  +  A     P YF+F+ RPMNLT+I++  +K KY T
Sbjct:   71 APIQDRLNKAIKGIVAHLWKHKVKGWGAGRGSPFAAVITRETAAQLGVPTYFDFVDRPMNLTWIKEKSDKKKYKT 145
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BLAST of mRNA_Ecto-sp13_S_contig63135.17056.1 vs. uniprot
Match: M4BEQ4_HYAAE (Bromo domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BEQ4_HYAAE)

HSP 1 Score: 50.8 bits (120), Expect = 5.000e-5
Identity = 25/70 (35.71%), Postives = 41/70 (58.57%), Query Frame = 1 
Query:  157 LVKPLISRLVAMKWPSGW------GNPFTTVFKKSNAP----PRYFEFIKRPMNLTFIRDNLNKNKYTTV 336
            L+ PL++ L A+ W +GW      GNPF   F K N      P YF+++K PM+LT +++ + + +YT +
Sbjct:  145 LLAPLVAELRALTW-AGWVVSGKAGNPFLQKFTKDNCKRLGVPNYFDYVKTPMDLTRMKEKVERAEYTKI 213
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig63135.17056.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JP76_9PHAE2.080e-6192.86Bromo domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A7S2V5Q0_9STRA1.630e-836.84Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A836CA18_9STRA9.120e-840.58Bromodomain-containing protein n=1 Tax=Tribonema m... [more]
A0A7S3Y7Q8_HETAK2.210e-536.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
M4BEQ4_HYAAE5.000e-535.71Bromo domain-containing protein n=1 Tax=Hyaloperon... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig63135contigEcto-sp13_S_contig63135:16..354 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score203.0
Seed ortholog evalue7.5e-50
Seed eggNOG ortholog2880.D7FUU3
Model size339
KEGG koko:K10523
KEGG Pathwayko04340,ko04341,map04340,map04341
KEGG ModuleM00384
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0000302,GO:0001101,GO:0003674,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005773,GO:0005774,GO:0006355,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006970,GO:0006979,GO:0007154,GO:0007165,GO:0007275,GO:0007623,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009266,GO:0009409,GO:0009553,GO:0009555,GO:0009611,GO:0009628,GO:0009636,GO:0009651,GO:0009719,GO:0009723,GO:0009725,GO:0009733,GO:0009734,GO:0009737,GO:0009738,GO:0009739,GO:0009743,GO:0009751,GO:0009753,GO:0009755,GO:0009756,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010033,GO:0010035,GO:0010167,GO:0010182,GO:0010200,GO:0010243,GO:0010468,GO:0010498,GO:0010556,GO:0010557,GO:0010604,GO:0014070,GO:0016020,GO:0019005,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0019941,GO:0023052,GO:0030162,GO:0030163,GO:0031090,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031461,GO:0031625,GO:0032501,GO:0032502,GO:0032870,GO:0032991,GO:0033993,GO:0042221,GO:0042493,GO:0042542,GO:0043085,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045935,GO:0046677,GO:0048229,GO:0048511,GO:0048518,GO:0048522,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051173,GO:0051246,GO:0051252,GO:0051338,GO:0051347,GO:0051603,GO:0051716,GO:0051972,GO:0051973,GO:0060255,GO:0065007,GO:0065009,GO:0070887,GO:0071215,GO:0071229,GO:0071310,GO:0071322,GO:0071365,GO:0071396,GO:0071495,GO:0071704,GO:0080090,GO:0097305,GO:0097306,GO:0098588,GO:0098805,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901700,GO:1901701,GO:1902494,GO:1903506,GO:1990234,GO:2000112,GO:2000278,GO:2000573,GO:2001141
Exons1
EggNOG free text desc.histone acetyltransferase activity
EggNOG OGsCOG5076@1,KOG1778@2759
Ec32 ortholog descriptionBromodomain protein
Ec32 orthologEc-06_001120.1
Cds size339
COG Functional cat.BK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463876.003873-CDS-Ecto-sp13_S_contig63135:15..3541681463876.003873-CDS-Ecto-sp13_S_contig63135:15..354Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig63135 16..354 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig63135.17056.1prot_Ecto-sp13_S_contig63135.17056.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig63135 16..354 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig63135.17056.1

>prot_Ecto-sp13_S_contig63135.17056.1 ID=prot_Ecto-sp13_S_contig63135.17056.1|Name=mRNA_Ecto-sp13_S_contig63135.17056.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=113bp
MPSRSRQAKQVAKQAMKRQRPSSDNEEGEMASASGFSSSASAAAPLSQDA
KSLVKPLISRLVAMKWPSGWGNPFTTVFKKSNAPPRYFEFIKRPMNLTFI
RDNLNKNKYTTVS
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mRNA from alignment at Ecto-sp13_S_contig63135:16..354+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig63135.17056.1 ID=mRNA_Ecto-sp13_S_contig63135.17056.1|Name=mRNA_Ecto-sp13_S_contig63135.17056.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=339bp|location=Sequence derived from alignment at Ecto-sp13_S_contig63135:16..354+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCCTCTCGTTCTCGACAGGCAAAGCAAGTCGCCAAACAAGCCATGAA
ACGGCAAAGACCCTCTAGTGACAACGAAGAGGGGGAGATGGCCTCCGCAT
CAGGGTTTTCCTCATCGGCATCCGCAGCAGCACCGCTGTCCCAAGACGCC
AAGTCTCTCGTGAAGCCGCTCATCTCCAGGCTAGTAGCAATGAAGTGGCC
GTCGGGCTGGGGCAATCCCTTCACGACAGTTTTCAAGAAGAGCAACGCCC
CGCCGCGGTACTTCGAATTTATCAAGCGGCCCATGAATCTCACTTTCATC
CGAGACAACTTGAACAAGAACAAGTACACCACGGTGAGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig63135:16..354+

>mRNA_Ecto-sp13_S_contig63135.17056.1 ID=mRNA_Ecto-sp13_S_contig63135.17056.1|Name=mRNA_Ecto-sp13_S_contig63135.17056.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=339bp|location=Sequence derived from alignment at Ecto-sp13_S_contig63135:16..354+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCCTCTCGTTCTCGACAGGCAAAGCAAGTCGCCAAACAAGCCATGAA
ACGGCAAAGACCCTCTAGTGACAACGAAGAGGGGGAGATGGCCTCCGCAT
CAGGGTTTTCCTCATCGGCATCCGCAGCAGCACCGCTGTCCCAAGACGCC
AAGTCTCTCGTGAAGCCGCTCATCTCCAGGCTAGTAGCAATGAAGTGGCC
GTCGGGCTGGGGCAATCCCTTCACGACAGTTTTCAAGAAGAGCAACGCCC
CGCCGCGGTACTTCGAATTTATCAAGCGGCCCATGAATCTCACTTTCATC
CGAGACAACTTGAACAAGAACAAGTACACCACGGTGAGT
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