prot_Ecto-sp13_S_contig63135.17056.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig63135.17056.1
Unique Nameprot_Ecto-sp13_S_contig63135.17056.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length113
Homology
BLAST of mRNA_Ecto-sp13_S_contig63135.17056.1 vs. uniprot
Match: A0A6H5JP76_9PHAE (Bromo domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JP76_9PHAE)

HSP 1 Score: 198 bits (504), Expect = 2.080e-61
Identity = 104/112 (92.86%), Postives = 110/112 (98.21%), Query Frame = 0
Query:    2 PSRSRQAKQVAKQAMKRQRPSSDNEEGEMASASGFSSSASAAAPLSQDAKSLVKPLISRLVAMKWPSGWGNPFTTVFKKSNAPPRYFEFIKRPMNLTFIRDNLNKNKYTTVS 113
            P+ +R+AKQVAKQAMKRQRPSSDN EGEMASASG+SSSASAAAPLSQ+AKSLVKPLISRLVAMKWPSGWGNPFTTVFKKSNAPPRYFEFIKRPMNLTFIRDNLNKNKYTTV+
Sbjct:  126 PAFARKAKQVAKQAMKRQRPSSDNGEGEMASASGYSSSASAAAPLSQEAKSLVKPLISRLVAMKWPSGWGNPFTTVFKKSNAPPRYFEFIKRPMNLTFIRDNLNKNKYTTVA 237          
BLAST of mRNA_Ecto-sp13_S_contig63135.17056.1 vs. uniprot
Match: A0A7S2V5Q0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5Q0_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.630e-8
Identity = 28/76 (36.84%), Postives = 47/76 (61.84%), Query Frame = 0
Query:   41 SAAAPLSQDAKSLVKPLISRLVAMKWPSGWGNPFTTVFKKSNAPP----RYFEFIKRPMNLTFIRDNLNKNKYTTV 112
            SA  P +   + +++P+++ L  M +   WGNPF TV  + N        YF+FI+RPMNLT+I++ +N  KY+++
Sbjct:  217 SAPLPRADQVQKVLRPVVNSLWKMNFGGQWGNPFRTVIDQENCVALGVANYFDFIERPMNLTWIKEKMNSKKYSSL 292          
BLAST of mRNA_Ecto-sp13_S_contig63135.17056.1 vs. uniprot
Match: A0A836CA18_9STRA (Bromodomain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA18_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 9.120e-8
Identity = 28/69 (40.58%), Postives = 36/69 (52.17%), Query Frame = 0
Query:   49 DAKSLVKPLISRLVAMKWPSGWGNPFTTVFKKSNAP----PRYFEFIKRPMNLTFIRDNLNKNKYTTVS 113
            D    + PL  RL  M +   WGNPFT V     A     P YF F+K PMNLT++RD L   +Y  ++
Sbjct:  172 DVSDALTPLHQRLTRMSFGKAWGNPFTQVITPETAAALRVPNYFNFVKEPMNLTWMRDKLRGAEYAAIA 240          
BLAST of mRNA_Ecto-sp13_S_contig63135.17056.1 vs. uniprot
Match: A0A7S3Y7Q8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y7Q8_HETAK)

HSP 1 Score: 51.6 bits (122), Expect = 2.210e-5
Identity = 27/75 (36.00%), Postives = 41/75 (54.67%), Query Frame = 0
Query:   44 APLSQDAKSLVKPLISRLVAMK---WPSGWGNPFTTVFKKSNAP----PRYFEFIKRPMNLTFIRDNLNKNKYTT 111
            AP+       +K +++ L   K   W +G G+PF  V  +  A     P YF+F+ RPMNLT+I++  +K KY T
Sbjct:   71 APIQDRLNKAIKGIVAHLWKHKVKGWGAGRGSPFAAVITRETAAQLGVPTYFDFVDRPMNLTWIKEKSDKKKYKT 145          
BLAST of mRNA_Ecto-sp13_S_contig63135.17056.1 vs. uniprot
Match: M4BEQ4_HYAAE (Bromo domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BEQ4_HYAAE)

HSP 1 Score: 50.8 bits (120), Expect = 5.000e-5
Identity = 25/70 (35.71%), Postives = 41/70 (58.57%), Query Frame = 0
Query:   53 LVKPLISRLVAMKWPSGW------GNPFTTVFKKSNAP----PRYFEFIKRPMNLTFIRDNLNKNKYTTV 112
            L+ PL++ L A+ W +GW      GNPF   F K N      P YF+++K PM+LT +++ + + +YT +
Sbjct:  145 LLAPLVAELRALTW-AGWVVSGKAGNPFLQKFTKDNCKRLGVPNYFDYVKTPMDLTRMKEKVERAEYTKI 213          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig63135.17056.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JP76_9PHAE2.080e-6192.86Bromo domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A7S2V5Q0_9STRA1.630e-836.84Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A836CA18_9STRA9.120e-840.58Bromodomain-containing protein n=1 Tax=Tribonema m... [more]
A0A7S3Y7Q8_HETAK2.210e-536.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
M4BEQ4_HYAAE5.000e-535.71Bromo domain-containing protein n=1 Tax=Hyaloperon... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036427Bromodomain-like superfamilyGENE3D1.20.920.10coord: 4..113
e-value: 1.8E-8
score: 36.0
IPR036427Bromodomain-like superfamilySUPERFAMILY47370Bromodomaincoord: 49..112
IPR001487BromodomainPFAMPF00439Bromodomaincoord: 83..112
e-value: 2.6E-5
score: 24.2
IPR001487BromodomainPROSITEPS50014BROMODOMAIN_2coord: 73..113
score: 9.753

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig63135contigEcto-sp13_S_contig63135:16..354 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig63135.17056.1mRNA_Ecto-sp13_S_contig63135.17056.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig63135 16..354 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig63135.17056.1 ID=prot_Ecto-sp13_S_contig63135.17056.1|Name=mRNA_Ecto-sp13_S_contig63135.17056.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=113bp
MPSRSRQAKQVAKQAMKRQRPSSDNEEGEMASASGFSSSASAAAPLSQDA
KSLVKPLISRLVAMKWPSGWGNPFTTVFKKSNAPPRYFEFIKRPMNLTFI
RDNLNKNKYTTVS
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036427Bromodomain-like_sf
IPR001487Bromodomain