mRNA_Ecto-sp13_S_contig6313.17055.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6313.17055.1
Unique NamemRNA_Ecto-sp13_S_contig6313.17055.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6313.17055.1 vs. uniprot
Match: D8LTC7_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTC7_ECTSI)

HSP 1 Score: 261 bits (666), Expect = 2.620e-83
Identity = 241/253 (95.26%), Postives = 245/253 (96.84%), Query Frame = 1 
Query:  166 MQAMVDEQRRLQQAKQSLDDMENQKEGGTAEAVCERLGRRQFEEGEDVFAVQWSGIHKMAQTGDIRGLRFFLEDSNTPPNIRDDRGDTPLNTAAHAGQSAAVEELLKHGANVNAKNNKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTNSVKSIKAIYECVGDPGVLSAQSHNXXXXXXXXXXXXXXXXXXXXXXLGANMDKQDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXNTTNDE 924
            MQAMVDEQRRLQQAKQSL+DME QKEG TAEAVCERLGRRQFEEGED+FAVQWSGIHKMAQTGDIRGLRFFLEDSNTPPNIRDDRGDTPLNTAAHAGQSAAVEELLKHGA+VNA    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX NSV+SIKAIYEC GDPGVLSAQSHNXXXXXXXXXXXXXXXXXXXXXXLGANMDKQDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXNTTNDE
Sbjct:    1 MQAMVDEQRRLQQAKQSLEDMEKQKEGSTAEAVCERLGRRQFEEGEDLFAVQWSGIHKMAQTGDIRGLRFFLEDSNTPPNIRDDRGDTPLNTAAHAGQSAAVEELLKHGADVNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSVQSIKAIYECFGDPGVLSAQSHNXXXXXXXXXXXXXXXXXXXXXXLGANMDKQDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXNTTNDE 253
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6313.17055.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTC7_ECTSI2.620e-8395.26Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6313contigEcto-sp13_S_contig6313:26..4985 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score260.8
Seed ortholog evalue6.8e-67
Seed eggNOG ortholog2880.D8LTC7
Model size924
KEGG koko:K15502
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG0504@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-12_006070.1
Cds size759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko03400
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6313.17055.1prot_Ecto-sp13_S_contig6313.17055.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6313 26..4820 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463875.8905478-CDS-Ecto-sp13_S_contig6313:25..1241681463875.8905478-CDS-Ecto-sp13_S_contig6313:25..124Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6313 26..124 -
1681463875.9080698-CDS-Ecto-sp13_S_contig6313:1266..13201681463875.9080698-CDS-Ecto-sp13_S_contig6313:1266..1320Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6313 1267..1320 -
1681463875.917821-CDS-Ecto-sp13_S_contig6313:1867..21191681463875.917821-CDS-Ecto-sp13_S_contig6313:1867..2119Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6313 1868..2119 -
1681463875.927541-CDS-Ecto-sp13_S_contig6313:3315..34631681463875.927541-CDS-Ecto-sp13_S_contig6313:3315..3463Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6313 3316..3463 -
1681463875.9374278-CDS-Ecto-sp13_S_contig6313:4011..41421681463875.9374278-CDS-Ecto-sp13_S_contig6313:4011..4142Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6313 4012..4142 -
1681463875.9475086-CDS-Ecto-sp13_S_contig6313:4745..48201681463875.9475086-CDS-Ecto-sp13_S_contig6313:4745..4820Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6313 4746..4820 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463875.9617531-UTR-Ecto-sp13_S_contig6313:4820..49851681463875.9617531-UTR-Ecto-sp13_S_contig6313:4820..4985Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6313 4821..4985 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6313.17055.1

>prot_Ecto-sp13_S_contig6313.17055.1 ID=prot_Ecto-sp13_S_contig6313.17055.1|Name=mRNA_Ecto-sp13_S_contig6313.17055.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=253bp
MQAMVDEQRRLQQAKQSLDDMENQKEGGTAEAVCERLGRRQFEEGEDVFA
VQWSGIHKMAQTGDIRGLRFFLEDSNTPPNIRDDRGDTPLNTAAHAGQSA
AVEELLKHGANVNAKNNKGWTPALSASSTDHRDVMMLLHHAGADLKMKDI
TGSTAAHMAASTNSVKSIKAIYECVGDPGVLSAQSHNGSTPAHIAAIFDN
AEALKALYELGANMDKQDRSGETPAHKAAKSHHVRCVEFLQAVGADMNTT
NDE
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mRNA from alignment at Ecto-sp13_S_contig6313:26..4985-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6313.17055.1 ID=mRNA_Ecto-sp13_S_contig6313.17055.1|Name=mRNA_Ecto-sp13_S_contig6313.17055.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4960bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6313:26..4985- (Ectocarpus species13 EcNAP12_S_4_19m)
CGAGGATAACACCAGGAGAACGATCGGTTGTTTTCCTCGTCGTCATTTTC
GAGCTGTGCATTCCACCGGTCGGCCTAGACGGGTGGGTAGGAGTTGACGT
AAGTAACGAAGAGAGAGGTCTATAGTAGTCCCACCGAGTGTACTGCTCTT
TCCCTTCAGGTAATCATGCAGGCCATGGTAGATGAACAGCGACGGCTTCA
ACAAGCGAAGCAGTCTCTGGACGATATGGAAAATCAAAAGGTGAGTCAGG
TTTTCTGTTCAGATGTATTCAAGCAGCTGGGTGCGAGAGTGAAGAACAAT
CCGCCCAGAGGGTGACCTTCAGTTCAAGAGAGGATACGAGACTCTTTCAA
CGTGCGCTCTGTAACAATATGCGGAATCTACTCGCAGAGCCGAAAAACAC
GCGTTGCCCCTTATACGGGCAAACGCCCTCTTGCGTTGCGACTGTCGCGT
GGTTTCTGTCGGAAGACAATGGACTTTGGACCTGCTTTACATCGCAGACG
TTTACCACAGGCGTACAATCTACATCAATTTGTTGGTTTGTGCGGTTTGG
TTGAGTCCCTGGTCTGGCGCTTGCAGCGGTAAGATGGCAGTGGTAGTATA
CTGTAGATCAGAATACCAGTAAGTGTTGTCTAGTCTTCACGGGCTTGCTA
CATGACTTTCATAATGAAACTCGGGGTTGTTCTGTTTCAGGCCCACATAA
CATGTCGGTCCGGTTCGAGAAAAGCATCCCCATCCATCATGTTGGACATT
GATGGCGCACACCCTTCCTTACGCGGTGTCCGCGGGTGGATATTCTTTCT
GGGTCTGGCTTACACTTCTTATGCCAAATACTCCATTGCACAGGAGGGTG
GCACCGCCGAAGCTGTTTGCGAGAGGCTTGGCAGGCGCCAATTCGAAGAG
GGCGAGGACGTTTTCGCGGTGCAATGGAGCGGCATCCACAAGATGGCACA
AACTGGGGATATTCGCGGTTTAAGGTACCGTCAGCAGCAGCAGCAGCAGC
AGCGCGTTTACCACTTGATCGAAACTGGAATCTGGTGGGAGTTGGCGGTC
TCCATGTCGGAACACGATACCACCTTACATTGTCACGCATCCAGCGCACG
CTAACATAGACCTATCCATGGAGCACTGACCTCACCATCACCCGGTTGTG
TTCGGGTTGTAAAGGGTAGGGAGCGGCGTAGGGTTCAAACCAGGATGCAG
ACAAAGTGTCAAACGAAAGTGTCTTGCTGTGTCAACCATTTCTTCTACAA
TTTGATTTAGTTGCCTCAATAGCAGACAGACCCGTGCGATAGTACAAATA
CGGGTGCCAGCAAGCTCTGTCGTTCAGTCACGTGCTTGCCTACATTTTGC
ATGCCTGTACTTGAAAAGTTATGCACAGAATTCGACACAGGGGCTGTGCG
GTACCATCGGGATGTAGGCGGCAGCGAACCCAAGAAAGATAGAATAACAT
ACACGAAGACGTACCCTGAACCGCAGCGATCCTCCACTTTGAAGCATGCT
TTGTACGGTTTACTTTTGTCAGGTTTTTTCTTGAAGACAGCAACACACCA
CCAAACATCCGAGACGATCGAGGCGACACGCCGCTGAACACAGCTGCCCA
CGCGGGCCAATCTGCGGCAGTAGAAGAACTGCTGAAGCACGGGGCTAATG
TCAACGCCAAAAACAACAAGGCAGGATGACAGACGCGCTGTTGTTGTGTT
AACAGAGTCGCTGTTAGACACTGCTGTGATTTGAGTCTAGATGTGACCAA
GCGTCGCTGCTTTGGGTAGAACGAAAGCCTCTGGTTTCCACTGCCTGCGA
ATACCGTCGCAGCTAGGAGCATAGTACTATTTTTTCTCTTTTTTGGGTTG
GCGTCAAGTTGAATCAATCACTATCTCTGCATCAGCAACCACAACGATTC
AATATTCGGATCCGATTCGGAACACGTTCTTCGAAAGGATACGTGCCGCA
TCTAGTGGTACCCAATGGGTGTTTTCCCATGGGGAAGTTTCCAAAAATAT
GCTTGAGGTAACGTGGAGGACAAGTTTGGTGTACATCGGCAGGAAACCTA
CAAACCAAATACCTCTTCCACGTAGATACCAACGGACCCACCTCCCCGTA
GAATTGAGGCAGGAAACCTCAAAAGCCCAATGATCTAGACAACATGACAA
ACCTGCATACCAACAGGTACGTGTTATAAATAGTGGGTTTGTTCTTGAGG
AAAGAGGGAATGCTGTGAGGTTGCGAGCCGTTTCACAGTCCGCAGCCGTA
GCGCATGGGTGTGATGAGAACAATAATGGACTGATTAGTTCAATTTTCGC
TCAGCCATCGGAGTCATCGCACGGGGGGGCGCTAACTCCGGAGAAACGTA
CCTCGATCGTGTGACGTTGCGCATGGTACCACGAGTTCCTCGCCACTTCT
TGCTCTGGAACAGTTTCTTCGTAGTGCTTTTCTACCGCGGTATGTACCGA
CCGGGGGGGTCCACTGCTGTATGCATAGCCCTGCTGTGACCGTGCACACG
TGTAGAAATGACACGGAAGCTTCCGTTGAATCGGAAAACAGTATCTACTT
AACCAAGCACACAGACACGCACCGCACCGTACACCTCGCAGAATTTCAGA
AAGAGATGATGTAGTACTTCGATTTCTGTACAAGGATCGGATTTCTCGCA
CAATCCGGAGTTGTCGCACAGAGGTGTGTTAAGAAGACAAAAGAGCCACG
TACGATTTAATACGATCGCACTCGTGTGCAATAGCTTGCAACCTTGCCAA
ACATACCTGTTCTGAGGGCATACGCGAAAGACAGAACAAACCGCAGCAGT
TCATCGACCGATCTCCGGAGCACTCCCGACGCTTTCCATTTTTGTGTTCA
TGCGATATAACAAAAGGGATGGACCCCAGCTCTGAGCGCGTCCTCGACCG
ACCACCGCGACGTGATGATGCTGCTCCACCATGCGGGAGCGGATCTGAAG
ATGAAGGACATAACCGGCTCCACTGCCGCGCATATGGCGGCCTCCACCAA
CAGCGTGAAATCTATCAAGGCGATCTACGAATGCGTCGGAGATCCGGGGG
TCTTGTCCGCGCAATCGCACAACGGGTCCACGCCGGCGCACATCGCCGCA
ATTTTCGACAACGCCGAGGTACAGCAGTAATGGTCTTGAGAGAGACGAAG
GTAGGCGACGTCGTGAGCAAGTTATGTGGTGTGTCGGTAGGGAGAGGTGT
ATGAATTCCAAACGCCGTTTGGAGCGGTGTTGCCGTTGGTTTCTCGAACC
ACTTCTCTCGCCGCGGATGTCCTACATGTGAAGATCAGTAACACGTGGCG
TCTAGAGCCCTTGAGGCCCTGTGGTGTTGCTTCATTTCAAAGCGTTTTCA
AATAACCCAGTGTAGTGTCGCGTGATTTTTACCGTATGTTTTTTCGGGGC
CGAAGATAGGCGTATTCCGCAACGTGTAGAACATGGCTAGCAATTGTCGA
TAAACTGCTTCTTCCGGGCAGATATGGTGCCGTATGCACACAACGATTCA
CTCAAATACCATTGCGTCTCTGTTGGGTATTTCCAGTGGTGAGATCCTGG
CCACACCAAAGGAGCGACAACTATAGCACAAACGATGACTCGCTCGGTGT
CCCATAACCTACATTACTACCATGTTTCGACGTCTTTGACCATGATGTCC
CGCTGCTCCCACCAGGCGCTCAAGGCGCTGTACGAGCTCGGGGCGAACAT
GGATAAGCAGGACAGATCGGTAAGATCATGTGCTTGCACGACGAGACGAG
ATCGTCAGATTCAGGGTAGGGAATGTGCCCGTTGCGGGGTGCTCCTAGTC
GTTTCTAGCACTGTTGTCTTTCGACCACGCACGCGGCATCAATACTAAGC
CAGGATCGTACGCGGCGGGTGGGCTTACCTGCAGCAACAAGCACAGGGCG
TGAGATTTTCACGAAGGCACACGGAGTTACATCTGTGGCAGCACCTCCTG
CGCGCTGCGTACAATACCGAATACAGCTTGGTTTGTCTTCCGACCCACTT
CTATAAACAGCGTTGAAACCACGATGGCACTCGCTCTCTCGTGAGATGCC
TGACCATGCGCGCCCAACGTCATACGGTCATCCTCCTTGTGGCAATGTTT
GGTTGCCCGCCCCGTGCAAAAGCTCGCGACCACCCACCACGGCGGCAACC
GCGTTGTGTATGTACACACTGCATGGCGTGGTTCATACCCATATTGCACG
CGCAAGCACAAACCCCCGTGGGGGGGAAAAATGACAAACCGCGAGCACGC
TCGCGCGGTTTAGTATCGGGTTCTGAAAAGAATCGACAACTACGTTTGCA
AGCGGTGGTTTGATCCCCACACGATTCCGCGCAACCCCGATGGTTGAAGC
CCAAACGCCCGCCCGGCCGAGACCGCACCTGCGTCACCGCGAATCGGTAC
CGAAAAGATAAATTATACGGCCGCGTTGTCTCAAGAAGAAAAGTAGAGCT
CGTCGCAAATTACATGTACGTGTGGTTTATCGGGGAGTACCCGAAGGAGG
TGTTCGGTAGCTAAGGGCAACGACAACACACCGCCATGGTGACTTGACCG
GCCCAACTTGCTCAACATGCAGAATGCGCAATCACTTGAGAACATCTACT
TTGACCGATGCTCATTTCTTGCTTCATGTTTCGGGTAACCCTAATCCCCA
CGGCGACTATATAGGTTTTAGTGCAGGATTCTTGACTCAACACCTGTTCT
TACGGCCACCTTTTCAGATTTATCTTTTTGAGGCTCCTCAAGTGCTTAAG
TTTTAAACTGCTGAGTCCGTCGGTGGTGGTGCGTTCTGTACGTAGTCTCC
TTTTTGTCGTTGGGCCCACCCGAATGACAACATGTTTGCCGCTGGTTGCT
GCTTGCGATAGGGCGAAACACCGGCTCACAAGGCTGCCAAATCGCACCAT
GTCCGGTGTGTGGAGTTTCTCCAGGCCGTGGGTGCCGACATGAACACCAC
CAATGATGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6313:26..4985-

>mRNA_Ecto-sp13_S_contig6313.17055.1 ID=mRNA_Ecto-sp13_S_contig6313.17055.1|Name=mRNA_Ecto-sp13_S_contig6313.17055.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=759bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6313:26..4985- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGGCCATGGTAGATGAACAGCGACGGCTTCAACAAGCGAAGCAGTC
TCTGGACGATATGGAAAATCAAAAGGAGGGTGGCACCGCCGAAGCTGTTT
GCGAGAGGCTTGGCAGGCGCCAATTCGAAGAGGGCGAGGACGTTTTCGCG
GTGCAATGGAGCGGCATCCACAAGATGGCACAAACTGGGGATATTCGCGG
TTTAAGGTTTTTTCTTGAAGACAGCAACACACCACCAAACATCCGAGACG
ATCGAGGCGACACGCCGCTGAACACAGCTGCCCACGCGGGCCAATCTGCG
GCAGTAGAAGAACTGCTGAAGCACGGGGCTAATGTCAACGCCAAAAACAA
CAAGGGATGGACCCCAGCTCTGAGCGCGTCCTCGACCGACCACCGCGACG
TGATGATGCTGCTCCACCATGCGGGAGCGGATCTGAAGATGAAGGACATA
ACCGGCTCCACTGCCGCGCATATGGCGGCCTCCACCAACAGCGTGAAATC
TATCAAGGCGATCTACGAATGCGTCGGAGATCCGGGGGTCTTGTCCGCGC
AATCGCACAACGGGTCCACGCCGGCGCACATCGCCGCAATTTTCGACAAC
GCCGAGGCGCTCAAGGCGCTGTACGAGCTCGGGGCGAACATGGATAAGCA
GGACAGATCGGGCGAAACACCGGCTCACAAGGCTGCCAAATCGCACCATG
TCCGGTGTGTGGAGTTTCTCCAGGCCGTGGGTGCCGACATGAACACCACC
AATGATGAG
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