mRNA_Ecto-sp13_S_contig63071.17053.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig63071.17053.1
Unique NamemRNA_Ecto-sp13_S_contig63071.17053.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig63071.17053.1 vs. uniprot
Match: D7FQJ9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQJ9_ECTSI)

HSP 1 Score: 133 bits (334), Expect = 7.620e-38
Identity = 61/64 (95.31%), Postives = 62/64 (96.88%), Query Frame = 2
Query:    2 VEKGPMWQLLFWICFAEIILFPTVIDMDKKDREPGDFALDPLNLCKTPEKTEKYKLSELKHGRL 193
            VEKGPMWQLLFWI  AEIILFPTVIDMDKKDREPGDFALDPLNLCKTPEKTEKYKL+ELKHGRL
Sbjct:  117 VEKGPMWQLLFWISLAEIILFPTVIDMDKKDREPGDFALDPLNLCKTPEKTEKYKLAELKHGRL 180          
BLAST of mRNA_Ecto-sp13_S_contig63071.17053.1 vs. uniprot
Match: A0A835ZCB2_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCB2_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 2.240e-21
Identity = 42/64 (65.62%), Postives = 49/64 (76.56%), Query Frame = 2
Query:    2 VEKGPMWQLLFWICFAEIILFPTVIDMDKKDREPGDFALDPLNLCKTPEKTEKYKLSELKHGRL 193
            VEKGPM QLLFW+   EII  P   +M  KDREPGDF+LDPL  CK PEK ++Y+LSELK+GRL
Sbjct:  121 VEKGPMVQLLFWLSLFEIITAPLTWNMQAKDREPGDFSLDPLGFCKDPEKKKRYQLSELKNGRL 184          
BLAST of mRNA_Ecto-sp13_S_contig63071.17053.1 vs. uniprot
Match: A0A835Z019_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z019_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 1.840e-19
Identity = 38/64 (59.38%), Postives = 48/64 (75.00%), Query Frame = 2
Query:    2 VEKGPMWQLLFWICFAEIILFPTVIDMDKKDREPGDFALDPLNLCKTPEKTEKYKLSELKHGRL 193
            VEKGPM  +LFW+   E++  P   +M +KDREPGDF LDPL  CK PEK ++Y+LSELK+GRL
Sbjct:  118 VEKGPMVMVLFWVSLFELLTAPLTWNMAEKDREPGDFMLDPLGFCKDPEKKKRYQLSELKNGRL 181          
BLAST of mRNA_Ecto-sp13_S_contig63071.17053.1 vs. uniprot
Match: A0A0G4H306_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4H306_VITBC)

HSP 1 Score: 82.4 bits (202), Expect = 6.190e-18
Identity = 36/64 (56.25%), Postives = 46/64 (71.88%), Query Frame = 2
Query:    2 VEKGPMWQLLFWICFAEIILFPTVIDMDKKDREPGDFALDPLNLCKTPEKTEKYKLSELKHGRL 193
            VE G M QLLFW+   EI+ F TV+DMD+KDREPGDF++DP    +TPE+    +  ELK+GRL
Sbjct:  123 VENGVMGQLLFWVSLWEIVTFKTVVDMDEKDREPGDFSMDPFGWTRTPERARVLRTQELKNGRL 186          
BLAST of mRNA_Ecto-sp13_S_contig63071.17053.1 vs. uniprot
Match: A0A0G4FXK5_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FXK5_9ALVE)

HSP 1 Score: 66.2 bits (160), Expect = 9.470e-12
Identity = 34/64 (53.12%), Postives = 42/64 (65.62%), Query Frame = 2
Query:    2 VEKGPMWQLLFWICFAEIILFPTVIDMDKKDREPGDFALDPLNLCKTPEKTEKYKLSELKHGRL 193
            V +G M QL  WI   E++ F T +DMDKKDR PGDF+ DPL L K  E   K K+ E+K+GRL
Sbjct:  122 VAEGVMTQLFGWIGLLEMLTFRTCLDMDKKDRAPGDFSFDPLKLGK--EDMTKMKVREIKNGRL 183          
BLAST of mRNA_Ecto-sp13_S_contig63071.17053.1 vs. uniprot
Match: F0Y5A3_AURAN (Putative plastid light harvesting protein isoform 33 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5A3_AURAN)

HSP 1 Score: 61.2 bits (147), Expect = 7.400e-10
Identity = 31/65 (47.69%), Postives = 37/65 (56.92%), Query Frame = 2
Query:    5 EKGPMWQLLFWICFAEIILFPTVIDMD--KKDREPGDFALDPLNLCKTPEKTEKYKLSELKHGRL 193
            + G M QL  W+ F E+IL   V  M      REPGD+ LDPL+ C TPEK    KL E+ H RL
Sbjct:  116 KYGAMQQLFLWLSFTEVILSAGVAQMMWMGSPREPGDYGLDPLDFCSTPEKKADMKLKEITHCRL 180          
BLAST of mRNA_Ecto-sp13_S_contig63071.17053.1 vs. uniprot
Match: A0A8J2SH85_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SH85_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 5.550e-9
Identity = 29/65 (44.62%), Postives = 37/65 (56.92%), Query Frame = 2
Query:    5 EKGPMWQLLFWICFAEIILFPTVIDMD--KKDREPGDFALDPLNLCKTPEKTEKYKLSELKHGRL 193
            + G M Q+  W+ F E++    V  M     DR+PGDF LDPL+ C TPEK    KL E+ H RL
Sbjct:  116 KYGAMQQIFLWLSFIEVVHSFGVAQMMWMGSDRQPGDFGLDPLDFCSTPEKAADMKLKEITHCRL 180          
BLAST of mRNA_Ecto-sp13_S_contig63071.17053.1 vs. uniprot
Match: A0A7S3WIW7_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3WIW7_EMIHU)

HSP 1 Score: 57.0 bits (136), Expect = 3.240e-8
Identity = 30/66 (45.45%), Postives = 37/66 (56.06%), Query Frame = 2
Query:    2 VEKGPMWQLLFWICFAEIILFPTVIDM--DKKDREPGDFALDPLNLCKTPEKTEKYKLSELKHGRL 193
            V+ GPM  LL  +   E I +  + +M   + DR PGDF LDP NLC TPEK E     E+ H RL
Sbjct:  122 VKAGPMLGLLLAVGAIEAISYNAIAEMMSGETDRRPGDFYLDPFNLCSTPEKLESMLEKEISHCRL 187          
BLAST of mRNA_Ecto-sp13_S_contig63071.17053.1 vs. uniprot
Match: A0A7S0AVV2_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AVV2_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 1.170e-6
Identity = 27/65 (41.54%), Postives = 41/65 (63.08%), Query Frame = 2
Query:    2 VEKGPMWQLLFWICFAEIILF-PTVIDMDKKDREPGDFALDPLNLCKTPEKTEKYKLSELKHGRL 193
            ++ GPM+QLLFW+ F +I++  P V+   + +REPGDFA       K     +K K++EL +GRL
Sbjct:  118 LKTGPMYQLLFWVGFIDILVTAPAVVASFEGEREPGDFAFGTKFAPKDDAGMQKKKVAELLNGRL 182          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig63071.17053.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7FQJ9_ECTSI7.620e-3895.31Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
A0A835ZCB2_9STRA2.240e-2165.63Light harvesting complex protein n=1 Tax=Tribonema... [more]
A0A835Z019_9STRA1.840e-1959.38Light harvesting complex protein n=1 Tax=Tribonema... [more]
A0A0G4H306_VITBC6.190e-1856.25Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A0G4FXK5_9ALVE9.470e-1253.13Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
F0Y5A3_AURAN7.400e-1047.69Putative plastid light harvesting protein isoform ... [more]
A0A8J2SH85_9STRA5.550e-944.62Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3WIW7_EMIHU3.240e-845.45Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
A0A7S0AVV2_9STRA1.170e-641.54Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig63071contigEcto-sp13_S_contig63071:3..591 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score121.7
Seed ortholog evalue1.1e-25
Seed eggNOG ortholog2880.D7FQJ9
Model size194
Hectar predicted targeting categorysignal peptide
Exons2
EggNOG free text desc.Chlorophyll A-B binding protein
EggNOG OGs2CDPH@1,2S5AH@2759
Cds size177
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463875.7283525-CDS-Ecto-sp13_S_contig63071:2..561681463875.7283525-CDS-Ecto-sp13_S_contig63071:2..56Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig63071 3..56 -
1681463875.739751-CDS-Ecto-sp13_S_contig63071:452..5751681463875.739751-CDS-Ecto-sp13_S_contig63071:452..575Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig63071 453..575 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463875.7495475-UTR-Ecto-sp13_S_contig63071:575..5911681463875.7495475-UTR-Ecto-sp13_S_contig63071:575..591Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig63071 576..591 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig63071.17053.1prot_Ecto-sp13_S_contig63071.17053.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig63071 3..575 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig63071.17053.1

>prot_Ecto-sp13_S_contig63071.17053.1 ID=prot_Ecto-sp13_S_contig63071.17053.1|Name=mRNA_Ecto-sp13_S_contig63071.17053.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=59bp
MWQLLFWICFAEIILFPTVIDMDKKDREPGDFALDPLNLCKTPEKTEKYK
LSELKHGRL
back to top

mRNA from alignment at Ecto-sp13_S_contig63071:3..591-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig63071.17053.1 ID=mRNA_Ecto-sp13_S_contig63071.17053.1|Name=mRNA_Ecto-sp13_S_contig63071.17053.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=589bp|location=Sequence derived from alignment at Ecto-sp13_S_contig63071:3..591- (Ectocarpus species13 EcNAP12_S_4_19m)
GGTGGAGAAGGGCCCCATGTGGCAGCTTCTGTTCTGGATCTGCTTCGCCG AGATCATCCTCTTCCCGACCGTCATCGACATGGACAAGAAGGACCGCGAG CCCGGAGACTTCGCCCTCGACCCCCTCAACCTCTGCAAGGTGAGGCGATG AGCATGGTTTCGACGTCTGTAGGTGTGTGGGTGGAACCTTCGAGTGGCTG CTGGTGCTGCTGGTTCGCGTTGTTCGGTGTGTTGTTCCCTTGACGCATTT GACTCCGACCTTGGTGTGTTGAATTGAAGAAAATGGTTTGCGCAGATGTT GACGGAATCATGGCTCTGCTGAAGTGTGCGGGTGTATGTTGTGCCGATAG CTCGCATCAACCGCACTAACTGGCCGACCAACGGCAATTCTTCAGTATCA GCCGACCATCTTTACTTTGAAGTACCACGTATGCGTGGTATATCTAGCAG TTGTTGCTTGTTGGTTTCGCTCGTGTCACCCCCTGCTCCCTCCGTCTGCT TGTTTTTTAATCTTTTGTCTCCGGTCGCCCTGCAGACCCCCGAGAAGACG GAGAAGTACAAGCTCTCGGAGCTCAAGCACGGCCGTTTG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig63071:3..591-

>mRNA_Ecto-sp13_S_contig63071.17053.1 ID=mRNA_Ecto-sp13_S_contig63071.17053.1|Name=mRNA_Ecto-sp13_S_contig63071.17053.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=177bp|location=Sequence derived from alignment at Ecto-sp13_S_contig63071:3..591- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGGCAGCTTCTGTTCTGGATCTGCTTCGCCGAGATCATCCTCTTCCC
GACCGTCATCGACATGGACAAGAAGGACCGCGAGCCCGGAGACTTCGCCC
TCGACCCCCTCAACCTCTGCAAGACCCCCGAGAAGACGGAGAAGTACAAG
CTCTCGGAGCTCAAGCACGGCCGTTTG
back to top