prot_Ecto-sp13_S_contig63071.17053.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig63071.17053.1
Unique Nameprot_Ecto-sp13_S_contig63071.17053.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length59
Homology
BLAST of mRNA_Ecto-sp13_S_contig63071.17053.1 vs. uniprot
Match: D7FQJ9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQJ9_ECTSI)

HSP 1 Score: 119 bits (298), Expect = 1.710e-32
Identity = 56/59 (94.92%), Postives = 57/59 (96.61%), Query Frame = 0
Query:    1 MWQLLFWICFAEIILFPTVIDMDKKDREPGDFALDPLNLCKTPEKTEKYKLSELKHGRL 59
            MWQLLFWI  AEIILFPTVIDMDKKDREPGDFALDPLNLCKTPEKTEKYKL+ELKHGRL
Sbjct:  122 MWQLLFWISLAEIILFPTVIDMDKKDREPGDFALDPLNLCKTPEKTEKYKLAELKHGRL 180          
BLAST of mRNA_Ecto-sp13_S_contig63071.17053.1 vs. uniprot
Match: A0A835ZCB2_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCB2_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 4.220e-16
Identity = 36/57 (63.16%), Postives = 43/57 (75.44%), Query Frame = 0
Query:    3 QLLFWICFAEIILFPTVIDMDKKDREPGDFALDPLNLCKTPEKTEKYKLSELKHGRL 59
            QLLFW+   EII  P   +M  KDREPGDF+LDPL  CK PEK ++Y+LSELK+GRL
Sbjct:  128 QLLFWLSLFEIITAPLTWNMQAKDREPGDFSLDPLGFCKDPEKKKRYQLSELKNGRL 184          
BLAST of mRNA_Ecto-sp13_S_contig63071.17053.1 vs. uniprot
Match: A0A0G4H306_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4H306_VITBC)

HSP 1 Score: 73.9 bits (180), Expect = 9.260e-15
Identity = 33/59 (55.93%), Postives = 43/59 (72.88%), Query Frame = 0
Query:    1 MWQLLFWICFAEIILFPTVIDMDKKDREPGDFALDPLNLCKTPEKTEKYKLSELKHGRL 59
            M QLLFW+   EI+ F TV+DMD+KDREPGDF++DP    +TPE+    +  ELK+GRL
Sbjct:  128 MGQLLFWVSLWEIVTFKTVVDMDEKDREPGDFSMDPFGWTRTPERARVLRTQELKNGRL 186          
BLAST of mRNA_Ecto-sp13_S_contig63071.17053.1 vs. uniprot
Match: A0A835Z019_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z019_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 3.380e-14
Identity = 32/57 (56.14%), Postives = 42/57 (73.68%), Query Frame = 0
Query:    3 QLLFWICFAEIILFPTVIDMDKKDREPGDFALDPLNLCKTPEKTEKYKLSELKHGRL 59
             +LFW+   E++  P   +M +KDREPGDF LDPL  CK PEK ++Y+LSELK+GRL
Sbjct:  125 MVLFWVSLFELLTAPLTWNMAEKDREPGDFMLDPLGFCKDPEKKKRYQLSELKNGRL 181          
BLAST of mRNA_Ecto-sp13_S_contig63071.17053.1 vs. uniprot
Match: A0A0G4FXK5_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FXK5_9ALVE)

HSP 1 Score: 59.7 bits (143), Expect = 2.380e-9
Identity = 32/59 (54.24%), Postives = 39/59 (66.10%), Query Frame = 0
Query:    1 MWQLLFWICFAEIILFPTVIDMDKKDREPGDFALDPLNLCKTPEKTEKYKLSELKHGRL 59
            M QL  WI   E++ F T +DMDKKDR PGDF+ DPL L K  E   K K+ E+K+GRL
Sbjct:  127 MTQLFGWIGLLEMLTFRTCLDMDKKDRAPGDFSFDPLKLGK--EDMTKMKVREIKNGRL 183          
BLAST of mRNA_Ecto-sp13_S_contig63071.17053.1 vs. uniprot
Match: F0Y5A3_AURAN (Putative plastid light harvesting protein isoform 33 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5A3_AURAN)

HSP 1 Score: 56.2 bits (134), Expect = 4.720e-8
Identity = 30/61 (49.18%), Postives = 35/61 (57.38%), Query Frame = 0
Query:    1 MWQLLFWICFAEIILFPTVIDMD--KKDREPGDFALDPLNLCKTPEKTEKYKLSELKHGRL 59
            M QL  W+ F E+IL   V  M      REPGD+ LDPL+ C TPEK    KL E+ H RL
Sbjct:  120 MQQLFLWLSFTEVILSAGVAQMMWMGSPREPGDYGLDPLDFCSTPEKKADMKLKEITHCRL 180          
BLAST of mRNA_Ecto-sp13_S_contig63071.17053.1 vs. uniprot
Match: A0A8J2SH85_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SH85_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 3.480e-7
Identity = 28/61 (45.90%), Postives = 35/61 (57.38%), Query Frame = 0
Query:    1 MWQLLFWICFAEIILFPTVIDMD--KKDREPGDFALDPLNLCKTPEKTEKYKLSELKHGRL 59
            M Q+  W+ F E++    V  M     DR+PGDF LDPL+ C TPEK    KL E+ H RL
Sbjct:  120 MQQIFLWLSFIEVVHSFGVAQMMWMGSDRQPGDFGLDPLDFCSTPEKAADMKLKEITHCRL 180          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig63071.17053.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FQJ9_ECTSI1.710e-3294.92Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
A0A835ZCB2_9STRA4.220e-1663.16Light harvesting complex protein n=1 Tax=Tribonema... [more]
A0A0G4H306_VITBC9.260e-1555.93Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A835Z019_9STRA3.380e-1456.14Light harvesting complex protein n=1 Tax=Tribonema... [more]
A0A0G4FXK5_9ALVE2.380e-954.24Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
F0Y5A3_AURAN4.720e-849.18Putative plastid light harvesting protein isoform ... [more]
A0A8J2SH85_9STRA3.480e-745.90Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR023329Chlorophyll a/b binding domain superfamilyGENE3D1.10.3460.10coord: 1..59
e-value: 9.9E-9
score: 37.2
IPR022796Chlorophyll A-B binding proteinPFAMPF00504Chloroa_b-bindcoord: 2..59
e-value: 2.2E-10
score: 41.3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..22
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 23..59
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..22
score: 0.6
NoneNo IPR availableSUPERFAMILY103511Chlorophyll a-b binding proteincoord: 1..59

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig63071contigEcto-sp13_S_contig63071:3..575 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig63071.17053.1mRNA_Ecto-sp13_S_contig63071.17053.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig63071 3..591 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig63071.17053.1 ID=prot_Ecto-sp13_S_contig63071.17053.1|Name=mRNA_Ecto-sp13_S_contig63071.17053.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=59bp
MWQLLFWICFAEIILFPTVIDMDKKDREPGDFALDPLNLCKTPEKTEKYK
LSELKHGRL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR023329Chlorophyll_a/b-bd_dom_sf
IPR022796Chloroa_b-bind