mRNA_Ecto-sp13_S_contig6305.17049.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6305.17049.1
Unique NamemRNA_Ecto-sp13_S_contig6305.17049.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig6305.17049.1 vs. uniprot
Match: D7FXF8_ECTSI (NAD(P)H dehydrogenase (Quinone) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXF8_ECTSI)

HSP 1 Score: 502 bits (1292), Expect = 3.920e-177
Identity = 244/258 (94.57%), Postives = 246/258 (95.35%), Query Frame = 3
Query:   57 MSGPAASVSRRKPLPSLLAGAMRALNRVTSFVPPPPSDKDGVQEKIVVVQVHPNGKDPSFTLALGEAVRDSLKDAGHQVRVTNLYQEQFQAALGGQEHRGFMTAFRDGKVTEDVKGHVDDLQWCSGLVLCYPTWWYSFPAILKGWLDRTLMPGVAFDLPNGVEKPHPKTGFISRLTNIRKAGYCTIRINVGMVTTFGNSFWNVRYVGDPGRRIVSRGLRPLFHPECTLLWKGLYDVEKCPPQDRSAFLEDVGRSFRDF 830
            MSGPAASVSRR+PL SLLAGAMRALNRVTSFVPPPPS KDGVQEKIVVVQVHPNGKDPSFTLALGEAVRDSLKDAGHQVRVTNLYQEQFQAALGGQEHRGFMTAFRDG+V EDVKGHVDDLQWCSGLVLCYPTWWYSFPAILKGWLDRTLMPGVAFDLPNGVEKPHPKTGFISRLTNIRK         VGMVTTFGNSFWNVRYVGDPGRRIVSRGLRPLFHPECTLLWKGLYDVEKCPPQDRSAFLEDVGRSFRDF
Sbjct:    1 MSGPAASVSRRQPLSSLLAGAMRALNRVTSFVPPPPSGKDGVQEKIVVVQVHPNGKDPSFTLALGEAVRDSLKDAGHQVRVTNLYQEQFQAALGGQEHRGFMTAFRDGQVAEDVKGHVDDLQWCSGLVLCYPTWWYSFPAILKGWLDRTLMPGVAFDLPNGVEKPHPKTGFISRLTNIRK---------VGMVTTFGNSFWNVRYVGDPGRRIVSRGLRPLFHPECTLLWKGLYDVEKCPPQDRSAFLEDVGRSFRDF 249          
BLAST of mRNA_Ecto-sp13_S_contig6305.17049.1 vs. uniprot
Match: A0A835ZJZ3_9STRA (NAD(P)H dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJZ3_9STRA)

HSP 1 Score: 242 bits (618), Expect = 6.350e-75
Identity = 118/247 (47.77%), Postives = 165/247 (66.80%), Query Frame = 3
Query:   90 KPLPSLLAGAMRALNRVTSFVPPPPSDKDGVQEKIVVVQVHPNGKDPSFTLALGEAVRDSLKDAGHQVRVTNLYQEQFQAALGGQEHRGFMTAFRDGKVTEDVKGHVDDLQWCSGLVLCYPTWWYSFPAILKGWLDRTLMPGVAFDLPNGVEKPHPKTGFISRLTNIRKAGYCTIRINVGMVTTFGNSFWNVRYVGDPGRRIVSRGLRPLFHPECTLLWKGLYDVEKCPPQDRSAFLEDVGRSFRDF 830
            +PL SL      ALN+ +   PP   + DG +++++++  HP  +  S++ AL +AV  +LKD GH VRV +LY E F+AAL  +E R +MTA+R+G +   V  HV+ L+W  GLV  YPTWWY+ PAILKGW DR L PG  FD+P+G    +P TG ISRLTNI++         +G+V+T+GN + +V+YVGDPGRR++SRGLR + HP+C++LW GL+ VE C  + RSAFLE V + F  F
Sbjct:   15 RPLRSLPGPFSLALNKCSCHFPPA-RNADGGEQRVLLLYAHPVHEGSSYSCALRDAVVSALKDRGHDVRVADLYAEGFEAALSAEELRTYMTAYREGALAPAVAAHVESLRWAQGLVFVYPTWWYTPPAILKGWFDRCLCPGATFDMPDGTTPTNPNTGVISRLTNIKR---------IGVVSTYGNQWQHVQYVGDPGRRLISRGLRAICHPDCSVLWLGLHGVETCAQERRSAFLEHVRQEFSWF 251          
BLAST of mRNA_Ecto-sp13_S_contig6305.17049.1 vs. uniprot
Match: W7TIP7_9STRA (Nad h dehydrogenase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIP7_9STRA)

HSP 1 Score: 201 bits (510), Expect = 9.930e-59
Identity = 106/251 (42.23%), Postives = 144/251 (57.37%), Query Frame = 3
Query:   93 PLPSLLAGAMRALNRVTSFVPPPPSDKDGVQEKIVVVQVHPNGKDPSFTLALGEAVRDSLKDAGHQVRVTNLYQEQFQAALGGQEHRGFMTAFRD--GKVTEDVKG---HVDDLQWCSGLVLCYPTWWYSFPAILKGWLDRTLMPGVAFDLPNGVEKPHPKTGFISRLTNIRKAGYCTIRINVGMVTTFGNSFWNVRYVGDPGRRIVSRGLRPLFHPECTLLWKGLYDVEKCPPQDRSAFLEDVGRSFRDF 830
            PL   LA A    NR TSF+PPPP        +++++  HP G   SF  A  E    SL++AGH+V+  +LY+E FQ  +   + R +M    D   + T D      ++D L+WC  L+  YPTWWY+ PAILKGW+DRT +P  AF LP     P    G +  L NI+K         VG+VTT+G+S+  +RYVGDPGRRI++RGLRPLF  +CTLLW G+Y  +     +R  FL +V    R+F
Sbjct:   15 PLSRFLASAA---NRWTSFIPPPPRHPSDPPRRVLLLHAHPMGTS-SFNGACFETTHRSLQEAGHEVQTLSLYEEGFQPCMQASDIREYMKPLSDRHDEGTPDKAALLRYIDLLKWCDALIFVYPTWWYAMPAILKGWIDRTFLPHSAFTLPTPTSPPASVVGLVPCLKNIKK---------VGVVTTYGSSYQVIRYVGDPGRRIIARGLRPLFDAQCTLLWLGMYSCDTASQAEREDFLAEVNSYMREF 252          
BLAST of mRNA_Ecto-sp13_S_contig6305.17049.1 vs. uniprot
Match: A0A7S0LIU4_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LIU4_9EUKA)

HSP 1 Score: 170 bits (430), Expect = 6.200e-47
Identity = 88/236 (37.29%), Postives = 133/236 (56.36%), Query Frame = 3
Query:  129 LNRVTSFVPPPPSDKDGVQEKIVVVQVHPNGKDPSFTLALGEAVRDSLKDAGHQVRVTNLYQEQFQAALGGQEH-RGFMTAFRDGKVTEDVKGHVDDLQWCSGLVLCYPTWWYSFPAILKGWLDRTLMPGV--AFDLPNGVEKPHPKTGFISRLTNIRKAGYCTIRINVGMVTTFGNSFWNVRYVGDPGRRIVSRGLRPLFHPECTLLWKGLYDVEKCPPQDRSAFLEDVGRSFRD 827
            LN++TS VPPPP ++   +  I+++  HP     S++ AL +AV +     GH++R   LY E FQ+A+   E  + F  A  + ++  DV+ H+ DL+W   +V  YPTWW++ PA+LKG+ DRTL+PG   A+D P    +P    G +  LTNI++         +  V+T+G         GD GR  +S  +RP+F P+CT LW GLY ++ C  +DRS F   V  + RD
Sbjct:   20 LNKLTSHVPPPPREEGKCKRHILLIHAHPRAD--SYSTALADAVHEGAVAGGHELRRRTLYAEGFQSAMTDSERGKYFDVASGESRIQGDVRSHLADLRWADSIVFVYPTWWFNMPAMLKGYFDRTLVPGPGGAWDFPGSGGEP-ASNGLVPYLTNIKR---------IAAVSTYGAPRHITFLAGDNGRNTISTAIRPIFDPQCTCLWLGLYSMDDCTKEDRSRFAVRVRETIRD 243          
BLAST of mRNA_Ecto-sp13_S_contig6305.17049.1 vs. uniprot
Match: UPI00122F4783 (NAD(P)H-dependent oxidoreductase n=1 Tax=Roseibium aestuarii TaxID=2600299 RepID=UPI00122F4783)

HSP 1 Score: 166 bits (420), Expect = 4.230e-46
Identity = 83/214 (38.79%), Postives = 121/214 (56.54%), Query Frame = 3
Query:  189 KIVVVQVHPNGKDPSFTLALGEAVRDSLKDAGHQVRVTNLYQEQFQAALGGQEHRGFMTAFRDGKVTEDVKGHVDDLQWCSGLVLCYPTWWYSFPAILKGWLDRTLMPGVAFDLPNGVEKPHPKTGFISRLTNIRKAGYCTIRINVGMVTTFGNSFWNVRYVGDPGRRIVSRGLRPLFHPECTLLWKGLYDVEKCPPQDRSAFLEDVGRSFRDF 830
            K +VV  HP   + SF  +L + V ++L+DAGH +RV +LY E FQ  +   E RG+   F +    + VK HV+D+ WC  L+  YPTWWY  PA+LKGWLDR  +P V F++P+      PK      + +IRK         +G+VTT G S+W  + +G+PGR+ + RG+R L HP C  L+   Y ++   PQ R  +L  V +  + F
Sbjct:    2 KTLVVYCHPC--EESFNASLRDTVLETLRDAGHAIRVRDLYGEAFQPVMSAAERRGYHDEFDN---VQPVKDHVEDILWCESLIFVYPTWWYGLPAMLKGWLDRVWVPHVTFEMPSETRSARPK------MQHIRK---------LGVVTTCGASWWLSKVIGEPGRKTLLRGMRTLCHPACKTLYMAHYKMDSSTPQSRETYLAKVRQRLKSF 195          
BLAST of mRNA_Ecto-sp13_S_contig6305.17049.1 vs. uniprot
Match: A0A7S0J3Q7_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J3Q7_9EUKA)

HSP 1 Score: 163 bits (412), Expect = 2.370e-44
Identity = 90/231 (38.96%), Postives = 130/231 (56.28%), Query Frame = 3
Query:  129 LNRVTSFVPPPPSDKDGVQEKIVVVQVHPNGKDPSFTLALGEAVRDSLKDAGHQVRVTNLYQEQFQAALGGQEHRG--FMTAFRDGKVTEDVKGHVDDLQWCSGLVLCYPTWWYSFPAILKGWLDRTLMPGV--AFDLPNGVEKPHPKTGFISRLTNIRKAGYCTIRINVGMVTTFGNSFWNVRYVGDPGRRIVSRGLRPLFHPECTLLWKGLYDVEKCPPQDRSAFLEDV 809
            LNR+TS VPPPP+++     +I+++  HP     SF++AL +AV+    D GH++R  +LY E FQ AL   E RG  F  A    ++  DV+  +DDL+W   LV  YPTWW++ PA+LKG+ DR L+PG   A+D P    +     G    LTN+++         V  V+T+G         GD GR  +S  +RPLF P+CT LW GLY ++ C  ++R+ F   V
Sbjct:   14 LNRLTSHVPPPPAEEGSGPRRILLIHAHPRAD--SFSMALADAVQAGAVDGGHELRRRSLYAENFQPALTSSE-RGVYFDGAGGAARLASDVRSQLDDLRWADSLVFVYPTWWFNLPAMLKGYFDRVLVPGPEGAWDFPAS-GRSLAANGLAPNLTNVKR---------VCAVSTYGAPRHIAFLAGDNGRNTISTAIRPLFDPQCTCLWLGLYSMDACSREERTQFAAHV 231          
BLAST of mRNA_Ecto-sp13_S_contig6305.17049.1 vs. uniprot
Match: A0A7S0VN59_9CRYP (Hypothetical protein n=2 Tax=Hemiselmis TaxID=77924 RepID=A0A7S0VN59_9CRYP)

HSP 1 Score: 158 bits (400), Expect = 1.900e-42
Identity = 85/252 (33.73%), Postives = 138/252 (54.76%), Query Frame = 3
Query:  129 LNRVTSFVPPPPSDKDGVQEKIVVVQVHPNGKDPSFTLALGEAVRDSLKDAGHQVRVTNLYQEQFQAALGGQEHRGF-----MTAFRDGKVTEDVKGHVDDLQWCSGLVLCYPTWWYSFPAILKGWLDRTLMPGVAFDLPNGVEKPHPK--------------TGFISRLTNIRKAGYCTIRINVGMVTTFGNSFWNVRYVGDPGRRIVSRGLRPLFHPECTLLWKGLYDVEKCPPQDRSAFLEDVGRSFRD 827
            LN ++S+VP PP + +GV+ +I++V  HP   D SF+ +L +A+ +   + GH+ +  ++Y+  F   +  ++ +G+       A ++  +T DV+G +  L+WC  +V CYPTWW + PA +KG+ DRTL+PG  +  P     P P+              TG + RLTNI++         V  V+T+G S   V   GD GR ++   +RPLF  +CT  W GLY+++   P+ +  FL +V R  RD
Sbjct:   14 LNMLSSYVPAPPRE-EGVKRRILLVHAHP--VDESFSCSLAKAIEEGAAEGGHEFKKIDIYRSGFNPIMSAKDRKGYYDNVDFDASKEAALTSDVRGAIAALRWCDSVVFCYPTWWMNTPAAMKGFFDRTLIPGSTWTFP-----PKPEGSVSLVPGFMNSGATGLVPRLTNIKR---------VYGVSTYGASQSIVTVAGDNGRNMICTAIRPLFARDCTCGWAGLYNMDFVSPEGKKEFLANVKRIIRD 248          
BLAST of mRNA_Ecto-sp13_S_contig6305.17049.1 vs. uniprot
Match: A0A6N6VDW8_9HYPH (Flavodoxin family protein n=1 Tax=Parvibaculum sedimenti TaxID=2608632 RepID=A0A6N6VDW8_9HYPH)

HSP 1 Score: 156 bits (394), Expect = 2.960e-42
Identity = 81/204 (39.71%), Postives = 116/204 (56.86%), Query Frame = 3
Query:  189 KIVVVQVHPNGKDPSFTLALGEAVRDSLKDAGHQVRVTNLYQEQFQAALGGQEHRGFMTAFRDGKVTEDVKGHVDDLQWCSGLVLCYPTWWYSFPAILKGWLDRTLMPGVAFDLPNGVEKPHPKTGFISRLTNIRKAGYCTIRINVGMVTTFGNSFWNVRYVGDPGRRIVSRGLRPLFHPECTLLWKGLYDVEKCPPQDRSAFL 800
            K++VV  HP  +  SF  AL + V D+LK  GH VR+T+LY E F   LG QE R + T   +GK    V  H+ ++QW   L+  +PTWWY  PA+LKGWLDR  +PGV+F +P G      +   +  LTN++          VG +TT G+ +W ++ VG+P RR + RG+R   HP C  LW   Y ++   P+ R ++L
Sbjct:    2 KVLVVYSHPVPE--SFCAALRDTVVDALKAKGHDVRLTDLYAENFDPRLGCQERRDYHT---EGKNLTYVPEHIANIQWAEALIFVFPTWWYGLPAMLKGWLDRVFVPGVSFTMPKG------QMPIMPALTNVKL---------VGGITTCGSPWWWMKIVGEPHRRTLLRGIRGSCHPRCKTLWMAHYRMDSSTPESRKSYL 185          
BLAST of mRNA_Ecto-sp13_S_contig6305.17049.1 vs. uniprot
Match: R1D2I0_EMIHU (NAD(P)H dehydrogenase n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D2I0_EMIHU)

HSP 1 Score: 157 bits (398), Expect = 3.630e-42
Identity = 85/245 (34.69%), Postives = 136/245 (55.51%), Query Frame = 3
Query:  129 LNRVTSFVPPPPSDKDGVQE-KIVVVQVHPNGKDPSFTLALGEAVRDSLKDAGHQVRVTNLYQEQFQAALGGQEHRGFMTAFR--DGKVTEDVKGHVDDLQWCSGLVLCYPTWWYSFPAILKGWLDRTLMPGV--------AFDLPNGVEKPHPKTG-FISRLTNIRKAGYCTIRINVGMVTTFGNSFWNVRYVGDPGRRIVSRGLRPLFHPECTLLWKGLYDVEKCPPQDRSAFLEDVGRSFRD 827
            LN VT+ VPPPP   D V++ KI++V  HP  +  S++ AL +AV    K+ GH +R  +LY+E+F   +   E   ++  F     ++  DV+ H+DDL+W   +V  YPTWW++ PA+LKG++DR ++P          AF   N   K    +G  +  LTN+++         V  ++T+G+  +     GD GR ++  G+R LF P CT+LW GLY ++ C  + R+ F++ V  + RD
Sbjct:   14 LNWVTTQVPPPPRSPDDVEKRKILLVHAHP--RTDSYSHALADAVEAGAKEGGHTIRRRDLYKERFSPVMTAAERGAYLRDFDMVPKRLASDVRSHLDDLRWADSVVFVYPTWWFNVPAMLKGYIDRVMVPATPGSGQGAWAFPDSNIQGKASIGSGGLVGHLTNVKR---------VAGISTYGSERYMGLLAGDNGRNMIGTGVRALFDPSCTVLWMGLYSLDFCSDEQRADFIDKVRETIRD 247          
BLAST of mRNA_Ecto-sp13_S_contig6305.17049.1 vs. uniprot
Match: A0A7X4DQ99_9RHOB (NAD(P)H-dependent oxidoreductase n=1 Tax=Boseongicola sp. SB0675_bin_26 TaxID=2604849 RepID=A0A7X4DQ99_9RHOB)

HSP 1 Score: 155 bits (391), Expect = 9.230e-42
Identity = 85/213 (39.91%), Postives = 126/213 (59.15%), Query Frame = 3
Query:  189 KIVVVQVHPNGKDPSFTLALGEAVRDSLKDAGHQVRVTNLYQEQFQAALGGQEHRGFMTAFRDGKVTEDVKGHVDDLQWCSGLVLCYPTWWYSFPAILKGWLDRTLMPGVAFDLPNG-VEKPHPKTGFISRLTNIRKAGYCTIRINVGMVTTFGNSFWNVRYVGDPGRRIVSRGLRPLFHPECTLLWKGLYDVEKCPPQDRSAFLEDVGRSFR 824
            +++VV  HP+ +  SF  AL E    +L+ AGH+VRV +LY+E F+  L  QE   ++   R   + +    HVDDLQW  GLV+ YPTW+Y  PA+LKGWL+R  +PGVAF++ +  +++P  K G               +R+ VG +TT G+ +W +R + DPGR + +RGLRPLF P C + W  L+D+      DR+ FL  V R+ +
Sbjct:    2 RLLVVFCHPSRE--SFGAALFETACRTLRAAGHEVRVHDLYREGFEPVLSEQEWSDYLPRTRT--IIDKHPDHVDDLQWAEGLVVIYPTWFYGPPAMLKGWLERVWLPGVAFEVADARLKRPKGKLG--------------NVRLFVG-ITTSGSPWWWLRLIRDPGRSLWTRGLRPLFSPNCRVTWLQLHDMNNSTENDRTGFLARVERTLQ 195          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6305.17049.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXF8_ECTSI3.920e-17794.57NAD(P)H dehydrogenase (Quinone) n=1 Tax=Ectocarpus... [more]
A0A835ZJZ3_9STRA6.350e-7547.77NAD(P)H dehydrogenase n=1 Tax=Tribonema minus TaxI... [more]
W7TIP7_9STRA9.930e-5942.23Nad h dehydrogenase n=1 Tax=Nannochloropsis gadita... [more]
A0A7S0LIU4_9EUKA6.200e-4737.29Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
UPI00122F47834.230e-4638.79NAD(P)H-dependent oxidoreductase n=1 Tax=Roseibium... [more]
A0A7S0J3Q7_9EUKA2.370e-4438.96Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A7S0VN59_9CRYP1.900e-4233.73Hypothetical protein n=2 Tax=Hemiselmis TaxID=7792... [more]
A0A6N6VDW8_9HYPH2.960e-4239.71Flavodoxin family protein n=1 Tax=Parvibaculum sed... [more]
R1D2I0_EMIHU3.630e-4234.69NAD(P)H dehydrogenase n=1 Tax=Emiliania huxleyi Ta... [more]
A0A7X4DQ99_9RHOB9.230e-4239.91NAD(P)H-dependent oxidoreductase n=1 Tax=Boseongic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6305contigEcto-sp13_S_contig6305:87..3262 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score505.4
Seed ortholog evalue1.6e-140
Seed eggNOG ortholog2880.D7FXF8
Model size1204
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.Flavodoxin-like fold
EggNOG OGs2S51M@2759,COG2249@1
Ec32 ortholog descriptionFlavodoxin-like fold
Ec32 orthologEc-07_003040.1
Cds size777
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6305.17049.1prot_Ecto-sp13_S_contig6305.17049.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6305 143..2891 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463875.4726653-UTR-Ecto-sp13_S_contig6305:86..1421681463875.4726653-UTR-Ecto-sp13_S_contig6305:86..142Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6305 87..142 +
1681463875.5365336-UTR-Ecto-sp13_S_contig6305:2891..32621681463875.5365336-UTR-Ecto-sp13_S_contig6305:2891..3262Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6305 2892..3262 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463875.491348-CDS-Ecto-sp13_S_contig6305:142..3681681463875.491348-CDS-Ecto-sp13_S_contig6305:142..368Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6305 143..368 +
1681463875.5086586-CDS-Ecto-sp13_S_contig6305:1135..13381681463875.5086586-CDS-Ecto-sp13_S_contig6305:1135..1338Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6305 1136..1338 +
1681463875.5184069-CDS-Ecto-sp13_S_contig6305:1928..20661681463875.5184069-CDS-Ecto-sp13_S_contig6305:1928..2066Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6305 1929..2066 +
1681463875.527786-CDS-Ecto-sp13_S_contig6305:2681..28911681463875.527786-CDS-Ecto-sp13_S_contig6305:2681..2891Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6305 2682..2891 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6305.17049.1

>prot_Ecto-sp13_S_contig6305.17049.1 ID=prot_Ecto-sp13_S_contig6305.17049.1|Name=mRNA_Ecto-sp13_S_contig6305.17049.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=259bp
MSGPAASVSRRKPLPSLLAGAMRALNRVTSFVPPPPSDKDGVQEKIVVVQ
VHPNGKDPSFTLALGEAVRDSLKDAGHQVRVTNLYQEQFQAALGGQEHRG
FMTAFRDGKVTEDVKGHVDDLQWCSGLVLCYPTWWYSFPAILKGWLDRTL
MPGVAFDLPNGVEKPHPKTGFISRLTNIRKAGYCTIRINVGMVTTFGNSF
WNVRYVGDPGRRIVSRGLRPLFHPECTLLWKGLYDVEKCPPQDRSAFLED
VGRSFRDF*
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mRNA from alignment at Ecto-sp13_S_contig6305:87..3262+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6305.17049.1 ID=mRNA_Ecto-sp13_S_contig6305.17049.1|Name=mRNA_Ecto-sp13_S_contig6305.17049.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3176bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6305:87..3262+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACCGATGCCACCGGAGAGGTGCTTTGTGTTGGTGTGCTCTCGCTCTCGGG GTTGCAATGTCGGGTCCTGCAGCGAGCGTGTCGCGACGGAAGCCCTTGCC TTCGCTCTTGGCTGGTGCAATGCGAGCGCTCAATCGGGTGACCTCCTTCG TCCCGCCGCCTCCCTCTGACAAGGATGGCGTCCAGGAGAAGATCGTGGTG GTCCAGGTCCACCCTAACGGGAAGGACCCGTCCTTCACCTTGGCCTTGGG GGAGGCCGTGCGGGACTCGCTAAAAGATGCAGGTGCGTGGGCATTCTTCG GGATTTCGGACATTAGCAGCACTGCCGTTGCCAACTCCCTCGTTGCTGCG TGTTGTGCGGTTACTGCTGTCGAGTCGCCAAAATCCAACGAGAGCGGCGT TGCATCGCCGCCTTCGTTGGGGTATGTATGTATGTATGCTGTTCCATGGA AGTTGTGCCTAGGCTTTGTTTCCCGTTTCTGCCACGCCATTATATAGAGA AAAATTACCAACAGACAACATCTACGTCTTGTGTCAACGCATGCGATAAG TGTGTTTTTACGACAGCTTGTTTAGTCCATGTAGCCCCGCAATAACCCTA GAGGGGTAATGGTAGGTCTACACGCTGTCGAGCAACTGCTACTGCTGTAC GTATGCATACGAGAATTATTGAGCGAAGTGCATTGTACCAACACCCGGTA GATGATCAGGCGAACCCCGTAACAAGCATGTGTAAACCGCGTTGCTACAG CAGCATACATGCAGCAGTGCAGCAATTTCTCACGATCTTGCAGCGAAGAA GTACCGGCAAGGTGTCCATGGGAATGGCATAGTCCAGCCTTTAGAAGAAT GCTTGTCGCTCAATGTACGTGAGCTCCAAAGAGCTCAGTCATCTGCGCAT GCTTTATTCGAGTTTTCTGCGCTCTCCACCTCTCGGGCATAAGTAGTTAC GATCGGTGTTCGATGGCTGCGCATAGATGCGTCCATTCCCGTCTAATTGC GCACGAACGGCGATCGCATACGTACATGTTATCGGTTTCACGATCGCAGG ACATCAAGTGCGGGTGACAAACCTCTACCAGGAGCAGTTCCAAGCGGCCC TGGGCGGACAGGAGCACCGGGGTTTCATGACGGCGTTCCGCGACGGAAAG GTTACGGAGGACGTGAAGGGCCACGTGGACGATCTCCAATGGTGCTCGGG GCTTGTGCTGTGCTATCCTACCTGGTGGTATTCCTTCCCTGCCATTTTGA AGGTGTCGTTGACGCCGTCAGCATGGTTTTCGTCTACTGTAAGGAGTACC TTTCGAGGCGATGGTGGGCAGCGTGTCCAGGGTCATGGTGGGGATTTACG TCGACGACGCTGGAAATGTTCATATACCCATTCCTCTTGTCCCACGCCAT TTTGATGGCGACGCGTCTCGAAGAAGCCCACACCTTGAGTACACTCAAGT AATATCATTTGCTGCGGTTTGCACAACGTTTTAGGTATTTTCCCGCAGAT ATCGGAAGCCTACCATCTTGTTGGGTGATGTTTTATGTTCTAGGAGGGAG CGGAGGGTGGAAGAGAGGCCATGACCGACCATGTTGACATCGGAGCCGTG TTGTACGAAATGGCTTGTATACAACCGCGTACTTGGTAGAATACGTGCTG GCCCGTGTTTTGGACAAGTACTGATGCCTGGGGATGGTGCTGTGCTAAAC TCGAACCGCCAAGACCCTCCTTCTTACTTTCTTTACCTATGCATCGTTCC ACTTCAACCGTGGGTGGGGTCAAATGCCCCCCTCCCCTCCCGGTTTTCCC ATCCTCTCGACGGTGCCTGCGTAATCCTCTCCCTTGCTGTAGGGCTGGCT TGACCGAACGCTGATGCCGGGAGTGGCGTTCGACCTCCCGAATGGCGTGG AGAAGCCTCACCCCAAGACCGGCTTCATCAGCCGACTCACCAACATCCGA AAGGCAGGCTACTGTACCATTCGAATCAACGTACCTAAGATCCTGTTGTA GCGGATCGCCTTCCCGCGATTAGTAAGGTTGTGAAGAAACAGAACAGGGA GGGGGGACGCAGACCTTATTTCCTTACCCTAACCCTAACCCAACTTCCCC GATTGTTTGCTTTATCCAACATGGTAAACTTAATTCGAAAAACCCTGCCA AGGCTAGTGTTTGTAGCCCCCCCCGGCGTCTCAAGGTCGGGCACGTAGCA GTTACACCAGGTTCTACATGATGGGAGATCTGCTGAAATCTGTTACAGAT TACGTCCGCAGGCAGTACTGGGAAGGTACTTCTCTTCATCTCAAAGCATA TCAGCCGCAGAGGCAAGGTTATTGTACACTTCTGTCTTTCTGAAGGCGCC CGTGTTTAGGGTATCCCGATCTCTGCATAGAGGTAGGTCACCGACGTGAC TGACGTTTTCGTAATATTGCTCTGAGCACAACACGAGACCGAACATTGTG GTACATGTAAAACAAGAATTTGTTTAACACTAGAATGAATCCGCGTGAAC GCTACAGGTCTGTTACGTGTCGTCGCCTCGAAACGCCCTGCCGCCGGTCG CTCCGTTGTCTCCGCTGCTCGCTGCATTTTTTTTCTTGTGAGCAGGTTGG CATGGTGACCACTTTCGGGAACAGTTTTTGGAACGTGCGGTACGTAGGCG ACCCCGGCAGGCGAATAGTGTCGAGAGGCCTCCGACCTCTCTTTCACCCG GAGTGCACGTTGCTGTGGAAAGGGCTGTACGACGTAGAAAAGTGCCCGCC GCAGGACAGGTCGGCGTTTTTGGAAGATGTCGGTCGTTCCTTTCGAGACT TTTAGGTGTTGATTTGGATTCGAAGCGTAGCGCTTTTTTCTTCCTCTTGT CGATTGTGGTTCGATCTTGCTTTCCAGTTTAGTTAGCTTTCGGGAAAGGC ACTAAACGATGTGAACATTACCCGCGGCTGTGGATGAACGATTGTGAAGC GGCCAGCCATTGGAGTCAGGGGGTCTTGCGGGAGGATACCGACTGTAGAG TTTGGTTTATTTTTTGACGTTTTCCCGCGATGCTCGTCCTACTGCTGCCA GTACTACATGCGATGTTCTTTTTTGTTGTCATCGAACACTGCTGTATCTC GGACCTCGCAAGTCATGCTCGTCGTACGTCTTCCCGTCACTAGTTGCGTC CAACTCGAATACCCCGGCGTTTGATA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6305:87..3262+

>mRNA_Ecto-sp13_S_contig6305.17049.1 ID=mRNA_Ecto-sp13_S_contig6305.17049.1|Name=mRNA_Ecto-sp13_S_contig6305.17049.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=777bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6305:87..3262+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGGGTCCTGCAGCGAGCGTGTCGCGACGGAAGCCCTTGCCTTCGCT
CTTGGCTGGTGCAATGCGAGCGCTCAATCGGGTGACCTCCTTCGTCCCGC
CGCCTCCCTCTGACAAGGATGGCGTCCAGGAGAAGATCGTGGTGGTCCAG
GTCCACCCTAACGGGAAGGACCCGTCCTTCACCTTGGCCTTGGGGGAGGC
CGTGCGGGACTCGCTAAAAGATGCAGGACATCAAGTGCGGGTGACAAACC
TCTACCAGGAGCAGTTCCAAGCGGCCCTGGGCGGACAGGAGCACCGGGGT
TTCATGACGGCGTTCCGCGACGGAAAGGTTACGGAGGACGTGAAGGGCCA
CGTGGACGATCTCCAATGGTGCTCGGGGCTTGTGCTGTGCTATCCTACCT
GGTGGTATTCCTTCCCTGCCATTTTGAAGGGCTGGCTTGACCGAACGCTG
ATGCCGGGAGTGGCGTTCGACCTCCCGAATGGCGTGGAGAAGCCTCACCC
CAAGACCGGCTTCATCAGCCGACTCACCAACATCCGAAAGGCAGGCTACT
GTACCATTCGAATCAACGTTGGCATGGTGACCACTTTCGGGAACAGTTTT
TGGAACGTGCGGTACGTAGGCGACCCCGGCAGGCGAATAGTGTCGAGAGG
CCTCCGACCTCTCTTTCACCCGGAGTGCACGTTGCTGTGGAAAGGGCTGT
ACGACGTAGAAAAGTGCCCGCCGCAGGACAGGTCGGCGTTTTTGGAAGAT
GTCGGTCGTTCCTTTCGAGACTTTTAG
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