mRNA_Ecto-sp13_S_contig6300.17043.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6300.17043.1
Unique NamemRNA_Ecto-sp13_S_contig6300.17043.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6300.17043.1 vs. uniprot
Match: A0A835ZJK2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJK2_9STRA)

HSP 1 Score: 108 bits (269), Expect = 8.390e-23
Identity = 62/145 (42.76%), Postives = 88/145 (60.69%), Query Frame = 1 
Query:  385 DSRRKLLLNLTYLNLFLALVLIIVGSAGPQYPGHSGTTNNPVSTWADRRLTTHVSPLYQADCPTKEVDGANASILRSALTVGLVILFTQPFSARYIAKQVDRGGATATLLTSVVSALTCLGSFAVVMVDINYIAGCCSLLEDNCE 819
            D R+ +LL +TY+NL L +V++++ + GP YPGH G         AD       S +Y   C + EV  AN SIL SAL  G+VI   QP +A  I KQV + GA  TLL+S V A+TC  +F V+++D+ Y+A CC+ L++ CE
Sbjct:   70 DLRQVILLRMTYVNLALGVVMVVLYALGPSYPGHFGALTQAR---AD-------SVIYGDTCASGEVADANDSILHSALIAGVVIWMLQPVAAWAIHKQVGQRGAHCTLLSSCVCAVTCACAFLVILLDMEYVADCCAQLQNECE 204
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6300.17043.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZJK2_9STRA8.390e-2342.76Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6300contigEcto-sp13_S_contig6300:1710..5695 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size851
Hectar predicted targeting categoryother localisation
Exons6
Cds size849
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6300.17043.1prot_Ecto-sp13_S_contig6300.17043.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6300 1710..5695 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463874.9335952-CDS-Ecto-sp13_S_contig6300:1709..18771681463874.9335952-CDS-Ecto-sp13_S_contig6300:1709..1877Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6300 1710..1877 -
1681463874.9544146-CDS-Ecto-sp13_S_contig6300:2439..26011681463874.9544146-CDS-Ecto-sp13_S_contig6300:2439..2601Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6300 2440..2601 -
1681463874.9688845-CDS-Ecto-sp13_S_contig6300:3076..33261681463874.9688845-CDS-Ecto-sp13_S_contig6300:3076..3326Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6300 3077..3326 -
1681463875.0035388-CDS-Ecto-sp13_S_contig6300:3760..38571681463875.0035388-CDS-Ecto-sp13_S_contig6300:3760..3857Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6300 3761..3857 -
1681463875.0189662-CDS-Ecto-sp13_S_contig6300:4483..46251681463875.0189662-CDS-Ecto-sp13_S_contig6300:4483..4625Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6300 4484..4625 -
1681463875.029124-CDS-Ecto-sp13_S_contig6300:5665..56951681463875.029124-CDS-Ecto-sp13_S_contig6300:5665..5695Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6300 5666..5695 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6300.17043.1

>prot_Ecto-sp13_S_contig6300.17043.1 ID=prot_Ecto-sp13_S_contig6300.17043.1|Name=mRNA_Ecto-sp13_S_contig6300.17043.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=283bp
PEDSAVDEEKDLVTEHLETSQASCTHKRKSGTSGSSTSFEQSGGLSLEIT
STASMPPGDTSPRRRPAPIDVGGGGIGQHQAGRWRQLSPTTADRLLAENG
GIPGDTGIFGETAYTPGGSPRFSSRGKKDSRRKLLLNLTYLNLFLALVLI
IVGSAGPQYPGHSGTTNNPVSTWADRRLTTHVSPLYQADCPTKEVDGANA
SILRSALTVGLVILFTQPFSARYIAKQVDRGGATATLLTSVVSALTCLGS
FAVVMVDINYIAGCCSLLEDNCEVLQYARLPA*
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mRNA from alignment at Ecto-sp13_S_contig6300:1710..5695-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6300.17043.1 ID=mRNA_Ecto-sp13_S_contig6300.17043.1|Name=mRNA_Ecto-sp13_S_contig6300.17043.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3986bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6300:1710..5695- (Ectocarpus species13 EcNAP12_S_4_19m)
CCCGAGGATTCAGCGGTTGACGAAGAAAAGGTGATGGAGGCTCCGCCTCC
CTGTCTGTCGTTGAACAAGAAGTTTTTGCCGCATCGAAGCAGTGATTCTG
TTATCAAAGGTAAACAGTGGAAGGCATGGTGGGGATCTTTGAACTTCGCC
GTTTTAACTTGGCGGCAGACAGCGTTTTACCGCATGCCTACCCTCCGCTC
GGTCTGAGCTAAGGTTCGAATGCTGGGGTCAAAACGTATTTTCGTTTTCT
CGCTCTTGCGTGTTTTCGTTTTATTTTTCTGTTTAGACAAAAACCTCATC
GGTGTCGATGACGATACGCTCCCCGTAATGCGTCGTGCTGTCATTTCATG
CGTAAATAATTGCGTAGATAAGATACCCGTGCTGTGTGACAGGTATGTTT
TCGACGTATCGGCTAACCCAGGACGAGGAGATCCGCTGCACTCTCAATGT
TCGAGAACTACATGCCGCAGTCGACGTTGTTCTTGGGCATCGTCTAAAGT
GTACCGAGGGCCTTCACGTCAAGCCTGCACAGCAGTTGAACACTTGAAAG
CATGTCCGACAACCCACGCAATGCGCGAAGATTGCAACGATGACATGCAT
ACTACTACCAAAACCAAACAAATGTTAAAGCGCCACACCGTCCGGTGGCC
ACAGCATGAGAAGCAATCCTCCGTATACGTATAATACGTAACAGGCATGG
TGAACAAGAGCATAGATGAAGTCGAAGACATATTGAGCCGATTCGGGCGC
TGACTGTACTTGCGAGAAAACAGCTTAACTGTCGCTCGCATTGCGCACGC
CGGGTGAGTGCCCGAAGCAATACAATTCGATGTGCTTTCACGACGGACAA
ACCTTACAAATCATCAGCTTAAGCGAGGACATAGACCGCCACAAGATGCG
TTGACCTATCCAACACCTTTCCTCGGGCTACACACATGCCGTAGTGATCA
ACCGCTTTGCGTCTCGAAAAGATGTGTTCAAATGGGCGAATATCAGCAAC
AATACGTGAGGATCTCCCCACCCCTTCTTTGCTACTACTGCTACCGCTCT
GCTGTAACGCACACGCCCAGGATTTAGTCACGGAACACTTGGAAACCTCG
CAAGCGTCCTGCACACATAAACGGAAAAGCGGCACCAGTGGATCTTCCAC
CTCATTCGAACAGTCCGGAGGTTTGAGCCTCGAAATCACCAGCACGGCCA
GCATGCCTCCAGGTACGGGGTAAAGCAAAGGCGGGCCAAGCCTGCTTCTG
TGGCATATCTGGAAACATATCGGAAAGCGCTTCTTACCCCTCTTGGTTTT
GATGTACCAACGATACACTGCGGAAGTTCGAGTGGTCTACTCGGGCGTTC
TACTTCCGTTTCTTGCTGGGACAGCAGTGATCCTTTGACGAATATCTACG
ACGTAGGGGGGTTGGGGCGGTTCAAGTGAACTCCATACAGACGCTCATCA
TATTCATACACCAGGAAAAAATAACGGGGCATATATTTCGGACCGCCACC
TCAATGAAACACAGCGAAAAGTCCATTGAACAGCTATTGTTTCTTGCTTG
CAAGGGAGGCAGCAAGAGACAAGATGCTGTATGTTTCTGCAAGTTGTTTC
GCAAGGATAAGCCGCTATCGCCGCGCGCTCGTAGATTAGGAACGGAGGTG
TGGAATACTCGCTAGAACGATTCTTGAAGCAAAGGCAATCAGTCTACTTA
AACCAAAACCGTGGTAGGTGAAACAGTCACAACATGTGTCGCTCAACGGA
CGCCTAGTGGCTCTGAGGAAGCGAGGCACCCGCTCGGCGGCGAACAGAAA
CAAACGCTAACGTTGACCAACTCGTAACAAGAACTCAGGTGACACCAGCC
CGAGACGCAGGCCCGCCCCAATAGACGTTGGCGGCGGCGGCATTGGGCAG
CATCAGGCTGGAAGATGGCGACAGCTCAGTCCGACGTAAGCACGCGTGGC
TTACAGACTACCTTCAATTTTGTTTGTTCCTGCGTCAATAAATAAGTACA
TCCAGGCGCATACATTTCTTTCCTGGAGAAGCGCGTCTGGCACGGGCACA
CCGGTGGTCTTGTCCTACGCATGGGGATGTATTCGCTTGTGGAAAGAAGA
GCTGTTTCCTTTGATGGTGTTGTTCACGAGCACTACCTGTGCGCGAGAAA
TGGGAGCTGGAGGAGAAAAATGCCACCGCCCCGTCCTCCTCAACTCGTCG
CGGCAGCGTTCTTTTCAATAGAGCTTTGCGTGGACATAACGCGTGTCTTG
CTTTCTGTACAGAATTGGTTGGTCTAGTCTCCACTGTTCTGACCACGTGG
ACCCACACACCCCTTGTGGAGACTCATATTTCTGTCCGCGTCGCCCCTTT
CTTCGTCATCGTGGAGCAGAACCGCCGACCGTCTTCTCGCAGAGAACGGC
GGCATCCCCGGAGACACAGGAATTTTCGGGGAAACTGCCTACACGCCGGG
AGGGTCTCCTCGGTTTTCCAGCAGGGGAAAGAAGGATTCGCGTAGAAAGC
TCCTGCTTAACCTGACCTACTTGAACCTGTTTCTGGCGCTGGTTCTGATT
ATCGTCGGCAGCGCCGGACCCCAGTACCCCGGTCACAGTGGCACGACGAA
CAATCCTGTCTCGACGTGGGTGAGCCTAAGCAGTGCTACTGCTTCTGGGT
AAACTTGAAGCCACAACAGTTCTGAACCTCCTCTCTCCAGTGTCTACAGA
CAAGATGTTCTTCTAACGTTCCTCAGTACCTCCAGCGAACGCTCCGCGAA
GATCTACATAAGGGATAGAGAAGGGAATCCCCGAGTGCCCACACGTCGCG
GACGTGACCTGATAGACCACCTCCCATTTATTGAATGACAGAACCCAGAG
CGAAACGGTTTGTGAGTATCTGTCGTAGTCCTGCGTGTAGGTGCAATGGA
GAGCTTATTCCCGGAGGCAGCAGTGTACATGCTGTCCGTCGGCCGTCTGT
TTTTCAGTAGGGATGAGGAAGGTAACCTCCAGGAAGTTTCTTCAGCGTGT
GTCATAACGTTTTCGCTTCCAAAGTTAAGGAGAAACAAGCACCCTTCCCG
AACCCCTTCCCCTAATCTCTTCGCTACCTTACCCCTCCCCTCAGGCCGAC
AGGCGCCTGACCACACACGTGAGTCCTCTCTACCAGGCCGATTGCCCGAC
GAAAGAGGTTGACGGGGCGAACGCCTCCATACTGCGCAGCGCGCTCACTG
TGGGGCTCGTGATCTTGTTCACCCAGCCGTTCTCCGCAAGATACATTGCT
AAGCAGGTGGAACATTCAGAAAGTAAGATGTCTGTTATTTCTGTTGTTGT
TGTTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTGGTTCCGGTTGTTG
CTGCTGCTACTGCTGCTGCTGCTATGGCTGCCATGGCTGCCATCGCTGCC
GTTGCTATCGGTGTATGTAGTCCTTGTCGTTTGCTTTTCGATTGAAGAAA
GACGAACACATGCTTCGTCTTCGTTGCTTTCTCGGAAATGGGGGAAGACC
GAAGATCGTCGAACGTGGAATTGAACGAAGAACGCAATTTACACCTGCGC
GATGACACTCACGTGCCCGATGTGGGGAGATCCCGTCAAATGCGACAAAG
TGTATCACCTAGGAGAATGGCGTCCCCCCAATCTGGAATGCGATGCTTGC
TGGTGAAATTAGAGCGTCCGTTGTTAAATATATCCAAGCTTCAAATCCCT
ATCTCTTTGCGGTCTTATTGAGTATCAGGGGATCTCCGCCCAACGCAATA
TTTTTGAAGTTCTTGTCCGCGCTCATGACAATCATAATCTTTGATACCGA
TATCGTGTCGTGGTCAAGGTGGACCGAGGAGGAGCCACAGCGACCCTTCT
CACGTCCGTTGTCAGCGCGCTCACGTGTCTTGGGTCCTTCGCAGTGGTGA
TGGTGGACATCAACTACATCGCCGGCTGCTGCTCGCTTCTGGAAGATAAC
TGCGAGGTATTACAGTATGCACGTCTCCCTGCGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6300:1710..5695-

>mRNA_Ecto-sp13_S_contig6300.17043.1 ID=mRNA_Ecto-sp13_S_contig6300.17043.1|Name=mRNA_Ecto-sp13_S_contig6300.17043.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=849bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6300:1710..5695- (Ectocarpus species13 EcNAP12_S_4_19m)
CCCGAGGATTCAGCGGTTGACGAAGAAAAGGATTTAGTCACGGAACACTT
GGAAACCTCGCAAGCGTCCTGCACACATAAACGGAAAAGCGGCACCAGTG
GATCTTCCACCTCATTCGAACAGTCCGGAGGTTTGAGCCTCGAAATCACC
AGCACGGCCAGCATGCCTCCAGGTGACACCAGCCCGAGACGCAGGCCCGC
CCCAATAGACGTTGGCGGCGGCGGCATTGGGCAGCATCAGGCTGGAAGAT
GGCGACAGCTCAGTCCGACAACCGCCGACCGTCTTCTCGCAGAGAACGGC
GGCATCCCCGGAGACACAGGAATTTTCGGGGAAACTGCCTACACGCCGGG
AGGGTCTCCTCGGTTTTCCAGCAGGGGAAAGAAGGATTCGCGTAGAAAGC
TCCTGCTTAACCTGACCTACTTGAACCTGTTTCTGGCGCTGGTTCTGATT
ATCGTCGGCAGCGCCGGACCCCAGTACCCCGGTCACAGTGGCACGACGAA
CAATCCTGTCTCGACGTGGGCCGACAGGCGCCTGACCACACACGTGAGTC
CTCTCTACCAGGCCGATTGCCCGACGAAAGAGGTTGACGGGGCGAACGCC
TCCATACTGCGCAGCGCGCTCACTGTGGGGCTCGTGATCTTGTTCACCCA
GCCGTTCTCCGCAAGATACATTGCTAAGCAGGTGGACCGAGGAGGAGCCA
CAGCGACCCTTCTCACGTCCGTTGTCAGCGCGCTCACGTGTCTTGGGTCC
TTCGCAGTGGTGATGGTGGACATCAACTACATCGCCGGCTGCTGCTCGCT
TCTGGAAGATAACTGCGAGGTATTACAGTATGCACGTCTCCCTGCGTGA
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