prot_Ecto-sp13_S_contig6300.17043.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig6300.17043.1
Unique Nameprot_Ecto-sp13_S_contig6300.17043.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length283
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6300.17043.1 vs. uniprot
Match: A0A835ZJK2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJK2_9STRA)

HSP 1 Score: 108 bits (269), Expect = 8.390e-23
Identity = 62/145 (42.76%), Postives = 88/145 (60.69%), Query Frame = 0 
Query:  129 DSRRKLLLNLTYLNLFLALVLIIVGSAGPQYPGHSGTTNNPVSTWADRRLTTHVSPLYQADCPTKEVDGANASILRSALTVGLVILFTQPFSARYIAKQVDRGGATATLLTSVVSALTCLGSFAVVMVDINYIAGCCSLLEDNCE 273
            D R+ +LL +TY+NL L +V++++ + GP YPGH G         AD       S +Y   C + EV  AN SIL SAL  G+VI   QP +A  I KQV + GA  TLL+S V A+TC  +F V+++D+ Y+A CC+ L++ CE
Sbjct:   70 DLRQVILLRMTYVNLALGVVMVVLYALGPSYPGHFGALTQAR---AD-------SVIYGDTCASGEVADANDSILHSALIAGVVIWMLQPVAAWAIHKQVGQRGAHCTLLSSCVCAVTCACAFLVILLDMEYVADCCAQLQNECE 204
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6300.17043.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZJK2_9STRA8.390e-2342.76Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 226..236
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 263..282
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 156..201
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 134..155
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 202..225
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 237..262
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..133
NoneNo IPR availableTMHMMTMhelixcoord: 202..224
NoneNo IPR availableTMHMMTMhelixcoord: 231..253
NoneNo IPR availableTMHMMTMhelixcoord: 134..156

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6300contigEcto-sp13_S_contig6300:1710..5695 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6300.17043.1mRNA_Ecto-sp13_S_contig6300.17043.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig6300 1710..5695 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig6300.17043.1 ID=prot_Ecto-sp13_S_contig6300.17043.1|Name=mRNA_Ecto-sp13_S_contig6300.17043.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=283bp
PEDSAVDEEKDLVTEHLETSQASCTHKRKSGTSGSSTSFEQSGGLSLEIT
STASMPPGDTSPRRRPAPIDVGGGGIGQHQAGRWRQLSPTTADRLLAENG
GIPGDTGIFGETAYTPGGSPRFSSRGKKDSRRKLLLNLTYLNLFLALVLI
IVGSAGPQYPGHSGTTNNPVSTWADRRLTTHVSPLYQADCPTKEVDGANA
SILRSALTVGLVILFTQPFSARYIAKQVDRGGATATLLTSVVSALTCLGS
FAVVMVDINYIAGCCSLLEDNCEVLQYARLPA*
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