mRNA_Ecto-sp13_S_contig62994.17039.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig62994.17039.1
Unique NamemRNA_Ecto-sp13_S_contig62994.17039.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig62994.17039.1 vs. uniprot
Match: D8LKP2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKP2_ECTSI)

HSP 1 Score: 144 bits (362), Expect = 5.110e-40
Identity = 72/90 (80.00%), Postives = 74/90 (82.22%), Query Frame = 1 
Query:    1 GHSMTETFECDLKSLLGEEAFLYDPYIVDEATTYIPNDRSKQLVVCLHPIAVLNVNYGDGASSPNLNIRALDELDDIFTRRFFFFDSVSG 270
            GHSMTETFECDLKSLLGEEAF YDPYIVDEAT              LHPIAVLNVNYGDG S+PNLNIRALDELDD+FTRRFFFFDSVSG
Sbjct:  270 GHSMTETFECDLKSLLGEEAFFYDPYIVDEATGE------------LHPIAVLNVNYGDGVSTPNLNIRALDELDDVFTRRFFFFDSVSG 347
[Close]
BLAST of mRNA_Ecto-sp13_S_contig62994.17039.1 vs. uniprot
Match: A0A7S1TPB6_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TPB6_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 9.120e-12
Identity = 38/91 (41.76%), Postives = 50/91 (54.95%), Query Frame = 1 
Query:    1 GHSMTETFECDLKSLLGEEAFLYDPYIVDEATTYIPNDRSKQLVVCLHPIAVLNVNY-GDGASSPNLNIRALDELDDIFTRRFFFFDSVSG 270
            GHS  + + CDLK+LL +E    D YIVD++T              L P+ V N NY       PNLN    DE+DD++TRRFF +D +SG
Sbjct:  428 GHSYEDKYRCDLKTLLYDEQVFMDLYIVDKSTD------------TLFPVPVRNKNYVRANGQLPNLNEDIEDEIDDVYTRRFFLYDVISG 506
[Close]
BLAST of mRNA_Ecto-sp13_S_contig62994.17039.1 vs. uniprot
Match: A0A7S4A157_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A157_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 3.420e-9
Identity = 35/90 (38.89%), Postives = 46/90 (51.11%), Query Frame = 1 
Query:    1 GHSMTETFECDLKSLLGEEAFLYDPYIVDEATTYIPNDRSKQLVVCLHPIAVLNVNYGDGASSPNLNIRALDELDDIFTRRFFFFDSVSG 270
            G S    F CDL++LLG E   YD Y+VD        D       CL+PI +L+ +  +G   PN N +     DDIF RRF FF++  G
Sbjct:  448 GRSTWTHFHCDLRTLLGREQLFYDLYLVDPDAGCGNED-------CLYPIPILHKDLINGNHYPNKNGKTAQGRDDIFVRRFSFFNTFLG 530
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig62994.17039.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LKP2_ECTSI5.110e-4080.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1TPB6_9STRA9.120e-1241.76Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S4A157_9STRA3.420e-938.89Hypothetical protein (Fragment) n=2 Tax=Pelagomona... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig62994contigEcto-sp13_S_contig62994:1..520 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score136.7
Seed ortholog evalue5.1e-30
Seed eggNOG ortholog2880.D8LKP2
Preferred nameTMEM67
Model size273
KEGG koko:K13525,ko:K19348
KEGG TC3.A.16.1
KEGG Pathwayko04141,ko05134,map04141,map05134
KEGG ModuleM00400,M00403
Hectar predicted targeting categoryother localisation
GOsGO:0001763,GO:0002009,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005813,GO:0005815,GO:0005856,GO:0005886,GO:0005929,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006996,GO:0007275,GO:0007368,GO:0007389,GO:0007399,GO:0007507,GO:0008092,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009653,GO:0009799,GO:0009855,GO:0009888,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0010564,GO:0010604,GO:0010638,GO:0010639,GO:0010824,GO:0010826,GO:0010948,GO:0012505,GO:0012506,GO:0015630,GO:0016020,GO:0016043,GO:0019222,GO:0019538,GO:0019941,GO:0022008,GO:0022406,GO:0022607,GO:0030030,GO:0030031,GO:0030154,GO:0030162,GO:0030163,GO:0030182,GO:0030433,GO:0030659,GO:0031005,GO:0031090,GO:0031253,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031344,GO:0031346,GO:0031410,GO:0031982,GO:0031984,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032886,GO:0032991,GO:0033043,GO:0033554,GO:0034976,GO:0035239,GO:0035295,GO:0035845,GO:0035869,GO:0036038,GO:0036503,GO:0042175,GO:0042176,GO:0042221,GO:0042461,GO:0042995,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043632,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044432,GO:0044433,GO:0044441,GO:0044444,GO:0044446,GO:0044459,GO:0044463,GO:0044464,GO:0044782,GO:0045724,GO:0045732,GO:0045786,GO:0045862,GO:0046530,GO:0046605,GO:0046606,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048666,GO:0048699,GO:0048729,GO:0048731,GO:0048754,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051082,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051173,GO:0051179,GO:0051246,GO:0051247,GO:0051493,GO:0051494,GO:0051603,GO:0051640,GO:0051641,GO:0051716,GO:0051726,GO:0051787,GO:0060170,GO:0060255,GO:0060271,GO:0060429,GO:0060491,GO:0060562,GO:0061136,GO:0061138,GO:0065007,GO:0070507,GO:0070925,GO:0071704,GO:0071840,GO:0071944,GO:0072359,GO:0080090,GO:0080134,GO:0080135,GO:0097708,GO:0097711,GO:0098588,GO:0098590,GO:0098827,GO:0120025,GO:0120031,GO:0120032,GO:0120034,GO:0120035,GO:0120036,GO:0120038,GO:0140056,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901800,GO:1902017,GO:1902115,GO:1902117,GO:1902855,GO:1902857,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:1904292,GO:1904294,GO:1905515,GO:1905897,GO:1905898
Exons3
EggNOG free text desc.negative regulation of centrosome duplication
EggNOG OGsKOG4611@1,KOG4611@2759
Cds size264
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03036,ko04131,ko04147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463874.1787312-UTR-Ecto-sp13_S_contig62994:0..91681463874.1787312-UTR-Ecto-sp13_S_contig62994:0..9Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig62994 1..9 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463874.192362-CDS-Ecto-sp13_S_contig62994:9..941681463874.192362-CDS-Ecto-sp13_S_contig62994:9..94Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig62994 10..94 +
1681463874.2020547-CDS-Ecto-sp13_S_contig62994:303..3471681463874.2020547-CDS-Ecto-sp13_S_contig62994:303..347Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig62994 304..347 +
1681463874.2128587-CDS-Ecto-sp13_S_contig62994:385..5201681463874.2128587-CDS-Ecto-sp13_S_contig62994:385..520Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig62994 386..520 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig62994.17039.1prot_Ecto-sp13_S_contig62994.17039.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig62994 10..520 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig62994.17039.1

>prot_Ecto-sp13_S_contig62994.17039.1 ID=prot_Ecto-sp13_S_contig62994.17039.1|Name=mRNA_Ecto-sp13_S_contig62994.17039.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=88bp
MTETFECDLKSLLGEEAFLYDPYIVDEATTYIPNDRSKQLVVCLHPIAVL
NVNYGDGASSPNLNIRALDELDDIFTRRFFFFDSVSG*
back to top

mRNA from alignment at Ecto-sp13_S_contig62994:1..520+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig62994.17039.1 ID=mRNA_Ecto-sp13_S_contig62994.17039.1|Name=mRNA_Ecto-sp13_S_contig62994.17039.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=520bp|location=Sequence derived from alignment at Ecto-sp13_S_contig62994:1..520+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGCACAGCATGACGGAGACCTTCGAGTGCGACCTCAAGTCGCTTCTCGG
AGAGGAAGCCTTCCTCTACGACCCGTACATTGTCGACGAGGCGAGTTTCT
TTTTTGTTTGAGAGGAAATTGGAGCTACGTGGGTGCCTGTGACTCAGCTG
GGTTCAACGCATGGGCCATCAAACCGCTCTAGTGTGAAACGTATCCCTCT
AGATAGTCCATACACTGCACTCGACCTCTTTTTCGCAGCATCACCACCTT
TTCCGCGATGAAACTTGAACCGTTTGTCAAACTCCTTACCCTCCACTTTT
CAGCAACTTACATTCCAAACGATCGTTCAAAACAACTTGTTGTCTGCGTT
CATTCTCCTCGAGAACACCGTAGGCTACCGGCGAGCTTCACCCCATAGCG
GTGTTGAATGTAAACTACGGTGACGGCGCGAGCTCACCCAACCTGAACAT
CCGAGCGTTGGACGAACTCGACGACATTTTCACCCGGCGGTTTTTCTTCT
TTGACAGCGTTTCCGGGTAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig62994:1..520+

>mRNA_Ecto-sp13_S_contig62994.17039.1 ID=mRNA_Ecto-sp13_S_contig62994.17039.1|Name=mRNA_Ecto-sp13_S_contig62994.17039.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=264bp|location=Sequence derived from alignment at Ecto-sp13_S_contig62994:1..520+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGGAGACCTTCGAGTGCGACCTCAAGTCGCTTCTCGGAGAGGAAGC
CTTCCTCTACGACCCGTACATTGTCGACGAGGCGACAACTTACATTCCAA
ACGATCGTTCAAAACAACTTGTTGTCTGCCTTCACCCCATAGCGGTGTTG
AATGTAAACTACGGTGACGGCGCGAGCTCACCCAACCTGAACATCCGAGC
GTTGGACGAACTCGACGACATTTTCACCCGGCGGTTTTTCTTCTTTGACA
GCGTTTCCGGGTAA
back to top