mRNA_Ecto-sp13_S_contig6287.17027.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig6287.17027.1 vs. uniprot
Match: D7FIC1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIC1_ECTSI) HSP 1 Score: 730 bits (1884), Expect = 1.340e-261 Identity = 406/466 (87.12%), Postives = 415/466 (89.06%), Query Frame = 1
Query: 1 GAAVVAAPRLLAFHVPPAPSGLCASASTSNRWRAVSPAGGGGRAGKAGLVALGKGLGCSLRARPGWCTRSFSSRLGVSAGDGDASSPPPPSLQNIPHTSLVLRDEATGCDIYLVGCLHGSYASGRDVQDVLEKVRPGAVVLELCESRHKALRRDLEKSAKGDAPLEGKAKWVSAFSSWAKGVKKTSAKSGLLQGILSGLLSAPYVVQRLGDFDPGLEFKTAMVYADPSVRPGYSTGAARGMVTSAAGGRAGPGECSVVLGDRDVQETLRRLGGALTALTGRGEGGDEKHGGGRGEGAPEGALPGAGGGGVGVGMLDAAETEATSGWNWGTLASDARILRVAVVGPSGRQWPDSLNVLDTVWRERQALGMLLLPLLLPITVVSEALQRSIGGVATVTAAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAVDVDLGRLLEGASDVLDALLVALSVWYMLRFFR 1398
GAA+VAAPRLLAFHVPPAP GLCASASTSNRWRAVS AGGGGRAGKAGL ALGKGLGCSLRARPGWCTRSFSSRLG SAG+G+ASSPPPPSLQNIPHTSLVLRDEATGCDIYLVGCLHGS+ASGRDVQDVLEKVRPGAVVLELCESRHKALRRDLEK AKGDAPLEGK +W SAFSSWAKGVKKTSAKSGL+QGILSGLLSAPYVVQRLGDFDPGLEFKTAMVYADPSVRPGYSTG ARGMV+ AAGG AGPGECSVVLGDRDVQETLRRLGGALTALTGRGEGGDEKHG G GGGV VG LDAAETEATSGWNWGTLASDARI+RVAVVGPSGRQWPDSLNVLDTVWRERQALGMLLLPLLLP+ VVSE LQRSIGGVAT T AAS XXXXXXXXXXXXXX AAVDVDLGRLLEG SDVLD LLV LSVWYMLRFFR
Sbjct: 8 GAAIVAAPRLLAFHVPPAPGGLCASASTSNRWRAVSSAGGGGRAGKAGLAALGKGLGCSLRARPGWCTRSFSSRLGASAGNGNASSPPPPSLQNIPHTSLVLRDEATGCDIYLVGCLHGSHASGRDVQDVLEKVRPGAVVLELCESRHKALRRDLEKRAKGDAPLEGKERWASAFSSWAKGVKKTSAKSGLVQGILSGLLSAPYVVQRLGDFDPGLEFKTAMVYADPSVRPGYSTGVARGMVSPAAGGGAGPGECSVVLGDRDVQETLRRLGGALTALTGRGEGGDEKHGVGXXXXXXXXXXXXXXGGGVSVGTLDAAETEATSGWNWGTLASDARIVRVAVVGPSGRQWPDSLNVLDTVWRERQALGMLLLPLLLPMMVVSETLQRSIGGVATATVAASGSGGGALRGFGAXXXXXXXXXXXXXXVGGGVAAVDVDLGRLLEGTSDVLDTLLVVLSVWYMLRFFR 473
BLAST of mRNA_Ecto-sp13_S_contig6287.17027.1 vs. uniprot
Match: A0A835YJK9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJK9_9STRA) HSP 1 Score: 125 bits (314), Expect = 6.270e-28 Identity = 106/296 (35.81%), Postives = 146/296 (49.32%), Query Frame = 1
Query: 349 LHGSYASGRDVQDVLEKVRPGAVVLELCESRHKALRRDL--EKSAKGDAPLEGKAKWVSAFSSWAKGVKKTSAKSGLLQGILSGLLSAPYVVQRLGDFDPGLEFKTAMVYADPSVRPGYSTGAARGMVTSAAGGRAGPGECSVVLGDRDVQETLRRLGGALTALTGRGEGGDEKHGGGRGEGAPEGALPGAGGGGVGVGMLDAAETEATSGWNWGT-------LASDARILRVAVVGPSGRQWPDSLNVLDTV-WRER--QALGMLLLPLLLPITVVSEALQRSIGGVATVTAAAS 1200
+ GS S RDV++V+ + PGAVVLELCESR KAL R+L E+S K + +E + + W +G+K T K GLLQ + +GL+S+ Y+ Q+L +FDPG EFKTAM ++ ARG+ +VLGDRD+ ETL RL G +G+ AP+ P A +A W+ L DAR+LR+AV G SG+QWP +LNV + WR + L LL PL I V++ A + +GG A S
Sbjct: 1 MQGSPTSSRDVENVINESSPGAVVLELCESRFKALSRELAAEQSVKEETEVE---RIHAVLGGWVRGLKSTQQKKGLLQALTAGLVSSGYLWQKLNNFDPGCEFKTAMALSN-----------ARGI--------------DIVLGDRDINETLGRLNGKNK----------------QGKRAPK-LQPNA--------PPPPPLLKAKKRWSVDRSLAYVRGLGRDARVLRLAVAGESGQQWPAALNVPRCIFWRGDVLKDLFGLLAPLTAGIYVMAGAFEMGVGGAIAAAHAIS 243
BLAST of mRNA_Ecto-sp13_S_contig6287.17027.1 vs. uniprot
Match: A0A7S0ZFW7_9RHOD (Hypothetical protein n=2 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZFW7_9RHOD) HSP 1 Score: 73.9 bits (180), Expect = 1.280e-10 Identity = 57/193 (29.53%), Postives = 89/193 (46.11%), Query Frame = 1
Query: 280 NIPHTSLVLRDEATGCDIYLVGCLHGSYASGRDVQDVLEKVRPGA---VVLELCESRHKALRR----DLEKSAKGDAPLEGKAKWVSAFSSWAKGVKKTSAKSGLLQGILSGLLSAPYVVQRLGDFDPGLEFKTAMVYADPSVRPGYSTGAARGMVTSAAGGRAGPGECSVVLGDRDVQETLRRLGGALTALT 837
++P T + L D +GCDI ++GC+HGS+ S DV+ V E + + VVLELC+ R K LR D +K+ PL K++ F G+ GIL+ +LS+ Y + +PG+EF+ A+ YA RP ++ GD +T+RRL +++ T
Sbjct: 54 DLPSTVVHLHDSKSGCDILVIGCVHGSFQSAADVEKVFELTQHASHTSVVLELCDQRLKTLRAPVVSDSKKNRNHKLPLN---KYIRNF-------------GGIGPGILAFILSSFYRIHTAIGLEPGIEFRAAVEYAKS--RP----------------------NSVLICGDATAVQTIRRLYSSMSPAT 206
BLAST of mRNA_Ecto-sp13_S_contig6287.17027.1 vs. uniprot
Match: A0A7S0BC06_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BC06_9RHOD) HSP 1 Score: 71.2 bits (173), Expect = 8.330e-10 Identity = 63/194 (32.47%), Postives = 91/194 (46.91%), Query Frame = 1
Query: 259 PPPPSLQNIPHTSLVLRDEATGCDIYLVGCLHGSYASGRDVQDVLEKVRPG--AVVLELCESRHKALRRDLEKSAKGDAPLEGKAKWVSAFSSWAKGVKKTSAKSGLLQGILSGLLSAPYVVQRLGDFDPGLEFKTAMVYADPSVRPGYSTGAARGMVTSAAGGRAGPGECSVVLGDRDVQETLRRLGGALTAL 834
PP L+ + S+V RDE +G D+Y+VGC+HG +S RDV+ V V AV++ELCE R R + K K + + + K + FS V+ G +++ +L +Q+L F+PGLEF A AD + R G +VLGDR ET++RL AL L
Sbjct: 35 PPDDKLRRLGSVSVV-RDEKSGVDVYVVGCVHGFRSSVRDVETVAACVTSPLRAVMIELCEDRW----RVISKLTKDKSSSKLQQKSFNLFSL----VRALGRFGGSGPALVAAVLVGISNIQKLSGFEPGLEFVCA---ADEAKRVG----------------------AKLVLGDRPANETIQRLSKALNPL 194
BLAST of mRNA_Ecto-sp13_S_contig6287.17027.1 vs. uniprot
Match: A0A7S3ED37_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3ED37_9RHOD) HSP 1 Score: 70.9 bits (172), Expect = 1.110e-9 Identity = 59/194 (30.41%), Postives = 90/194 (46.39%), Query Frame = 1
Query: 259 PPPPSLQNIPHTSLVLRDEATGCDIYLVGCLHGSYASGRDVQDVLEKVRPG--AVVLELCESRHKALRRDLEKSAKGDAPLEGKAKWVSAFSSWAKGVKKTSAKSGLLQGILSGLLSAPYVVQRLGDFDPGLEFKTAMVYADPSVRPGYSTGAARGMVTSAAGGRAGPGECSVVLGDRDVQETLRRLGGALTAL 834
PP ++ + S+V RDE +G D+Y+VGC+HG +S RD++ V V AV++ELCE R + + + + P E + F+ + + L+ +L G+ S +Q+L F+PGLEF A AD + R G +VLGDR ET++RL AL L
Sbjct: 35 PPGDKVRKLGSVSVV-RDEKSGVDVYVVGCIHGFRSSVRDIETVAGSVTSPLRAVMIELCEDRWRVISKLTKDKRSKKLPEEN----FNLFTLLQTPARLGGSGPALVGAVLVGISS----IQKLSGFEPGLEFVCA---ADEARRVG----------------------AKLVLGDRPANETIQRLSKALDPL 194
BLAST of mRNA_Ecto-sp13_S_contig6287.17027.1 vs. uniprot
Match: A0A7S4K8X1_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K8X1_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 2.680e-9 Identity = 65/207 (31.40%), Postives = 92/207 (44.44%), Query Frame = 1
Query: 274 LQNIPHTSLVLRDEATGCDIYLVGCLHGSYASGRDVQDVLEKV-RPGAVVLELCESRHKALRRDLEKSAKGDAPL---------EGKAKWVSAFSSWAKG-------VKKTSAKSGLLQGILSGLLSAPYVVQR-LGDFDPGLEFKTAMVYADPSVRPGYSTGAARGMVTSAAGGRAGPGECSVVLGDRDVQETLRRLGGALTALTG 840
L+ +L + D AT + LVGCLHGS +S DVQ +E VVLELC +R +R ++ + A L +G WA G V++T+ K G+ + + L Q L F+PG EF+ AM V G S G + G AG ++L D+ V ETLRR+G L A++G
Sbjct: 122 LRGSDDPALEIIDPATNVTVVLVGCLHGSLSSSSDVQRAIEDAPSTDVVVLELCAARFADVRNEVRSRSSSSALLGGEEMSDYLDGSESGFGGMRGWAAGLPLFLGAVRRTAEKRGMAAAVAALALGTVSGTQAALSGFEPGREFRVAM----ECVVEGRS-----GCIAGN-GEMAGGETVDIILADKTVDETLRRVGN-LPAVSG 317
BLAST of mRNA_Ecto-sp13_S_contig6287.17027.1 vs. uniprot
Match: A0A482VZR3_9CUCU (TraB domain-containing protein n=1 Tax=Asbolus verrucosus TaxID=1661398 RepID=A0A482VZR3_9CUCU) HSP 1 Score: 66.6 bits (161), Expect = 3.030e-8 Identity = 63/188 (33.51%), Postives = 86/188 (45.74%), Query Frame = 1
Query: 280 NIPHTSLVLRDEATGCDIYLVGCLHGSYASGRDVQDVLEKVRPGAVVLELCESRHKALRRDLEKSAKGDAPLEGKAKWVSAFSSWAKGVKKTSAKSGLLQGILSGLL--SAPYVVQRLGDFDPGLEFKTAMVYADPSVRPGYSTGAARGMVTSAAGGRAGPGECSVVLGDRDVQETLRRLGGALTALT 837
N+P T +L+ EATG +YLVG H S S DV V++ + P VVLELC SR L D EK+ +A +K ++ S SGL GI+ LL + ++ + LG PG EF+ A Y + P C V+LGDR + TL+R AL+ LT
Sbjct: 56 NLPETVTLLKHEATGAKVYLVGTAHFSNESKEDVIKVIQNILPHVVVLELCSSRTNILSLD-EKTILDEAKNIDLSKIITNIRS-----------SGLYNGIMYILLLNMSAHITKELG-MAPGGEFRAA--YREAEKVP----------------------NCEVLLGDRPLGITLQR---ALSKLT 203
BLAST of mRNA_Ecto-sp13_S_contig6287.17027.1 vs. uniprot
Match: A0A090M7F3_OSTTA (Pheromone shutdown, TraB n=1 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A090M7F3_OSTTA) HSP 1 Score: 65.9 bits (159), Expect = 3.080e-8 Identity = 54/176 (30.68%), Postives = 79/176 (44.89%), Query Frame = 1
Query: 292 TSLVLRDEATGCDIYLVGCLHGSYASGRDVQDVLEKVRPGAVVLELCESRHKALRRDLEKSAKGDAPLEG-KAKWVS-AFSSWAKGVKKTSAKSGLLQGILSGLLSAPYVVQRLGDFDPGLEFKTAMVYADPSVRPGYSTGAARGMVTSAAGGRAGPGECSVVLGDRDVQETLRRL 813
T VLR +IYLVG H S S ++V +++ +VRP V +ELC+ R +R + K +G+ EG +++V A + + G+L + Y RL +PG EFK A+ A+ + GA VV DRDV+ETLRRL
Sbjct: 34 TVSVLRSSTCEREIYLVGTAHVSEKSAQEVAELVRRVRPTVVAVELCDERLATMRETIAKERRGEKKGEGGTSEFVRRAVRDFFGAFTGARGPGNVADGLLGAAMKTFYGFFRLSGLEPGKEFKEAVKEAE-------ALGA------------------QVVCADRDVRETLRRL 184
BLAST of mRNA_Ecto-sp13_S_contig6287.17027.1 vs. uniprot
Match: D6WMS0_TRICA (TraB domain-containing protein-like Protein n=2 Tax=Tribolium TaxID=7069 RepID=D6WMS0_TRICA) HSP 1 Score: 66.2 bits (160), Expect = 3.960e-8 Identity = 65/188 (34.57%), Postives = 84/188 (44.68%), Query Frame = 1
Query: 280 NIPHTSLVLRDEATGCDIYLVGCLHGSYASGRDVQDVLEKVRPGAVVLELCESRHKALRRDLEKSAKGDAPLEGKAKWVSAFSSWAKGVKKTSAKSGLLQGILSGLL--SAPYVVQRLGDFDPGLEFKTAMVYADPSVRPGYSTGAARGMVTSAAGGRAGPGECSVVLGDRDVQETLRRLGGALTALT 837
N+P T +L+ EATG +YLVG H S S DV V+ + P AVVLELC SR L D EK+ +A K V+ S SGL GI+ LL + ++ + LG PG EF+ A Y + P C V+LGDR + TL R AL+ LT
Sbjct: 56 NLPETVTLLKHEATGAKVYLVGTAHFSNESKEDVIKVIRNILPHAVVLELCASRTNILSLD-EKTILEEAKNIDLQKIVNNIKS-----------SGLYNGIMYILLLNMSAHITKELG-MAPGGEFRVA--YQEAEKIP----------------------NCEVLLGDRPLGITLHR---ALSKLT 203
BLAST of mRNA_Ecto-sp13_S_contig6287.17027.1 vs. uniprot
Match: A0A7S0KB33_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A7S0KB33_9STRA) HSP 1 Score: 62.8 bits (151), Expect = 1.220e-7 Identity = 38/108 (35.19%), Postives = 55/108 (50.93%), Query Frame = 1
Query: 304 LRDEATGCDIYLVGCLHGSYASGRDVQDVLEKVRPGAVVLELCESRHKALRRDLEKSAKGDAPLEGKAKWVSAFSSWAKGVKKTSAKSGLLQGILSGLLSAPYVVQRL 627
L +TGC++ LVG +HGS +S DV LE+ VVLELC SR +RRD+E + GD + K + V T + GL GI + ++ +VQ +
Sbjct: 101 LTHPSTGCNVTLVGVVHGSASSSNDVAKTLERKDVDVVVLELCASRFADMRRDMELNTSGDDGMYMPQKLNQTMDKFLNLVAMTVDRKGLASGIATFIIGGVSLVQSI 208 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6287.17027.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig6287.17027.1 >prot_Ecto-sp13_S_contig6287.17027.1 ID=prot_Ecto-sp13_S_contig6287.17027.1|Name=mRNA_Ecto-sp13_S_contig6287.17027.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=467bp GAAVVAAPRLLAFHVPPAPSGLCASASTSNRWRAVSPAGGGGRAGKAGLVback to top mRNA from alignment at Ecto-sp13_S_contig6287:687..4892- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig6287.17027.1 ID=mRNA_Ecto-sp13_S_contig6287.17027.1|Name=mRNA_Ecto-sp13_S_contig6287.17027.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4206bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6287:687..4892- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6287:687..4892- >mRNA_Ecto-sp13_S_contig6287.17027.1 ID=mRNA_Ecto-sp13_S_contig6287.17027.1|Name=mRNA_Ecto-sp13_S_contig6287.17027.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1401bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6287:687..4892- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |