mRNA_Ecto-sp13_S_contig6285.17025.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6285.17025.1
Unique NamemRNA_Ecto-sp13_S_contig6285.17025.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6285.17025.1 vs. uniprot
Match: D7FKX2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKX2_ECTSI)

HSP 1 Score: 413 bits (1061), Expect = 4.420e-145
Identity = 217/231 (93.94%), Postives = 223/231 (96.54%), Query Frame = 1 
Query:    1 MALRSLSRAGVEMGARVAGTGSKCCRVPHATRHVRGAERKMSSIVGQGPGHQAPSFRQGSLSAGTQLFKLVETDLMSKELTRYGPADAEHLGLHSIHDVLSDIAAATLTPHKLAAPTVTAVAPSAEVASVPASDEPAAAPAVRDEEVLAAWGLGPAVTDGSEVEGIQAPPVAEVGEEGGVVSNEKMAIKRTYQPSTLKRKRKHGFLYRAKTRLGKKILRRRQDKGRWRLGI 693
            MALRSLSRAGVEMGARV GTGSKCCRVPHATRHV GAERKMSS+VGQGPGH+APSFRQGSL AGTQLFKLVETDLMSKELTRYGPADAEHLGLHSI DVLSDIAAATLTPHKLAAP VTAVAPSAEVASVPA++EPAAAPAVR+EEVLAAWGLGP VTDGSEVEGIQAPPV EVGEEGG VSNEK+AIKRTYQPSTLKRKRKHGFLYRAKTRLGKKILRRRQDKGRWRLGI
Sbjct:    1 MALRSLSRAGVEMGARVVGTGSKCCRVPHATRHVGGAERKMSSVVGQGPGHRAPSFRQGSLGAGTQLFKLVETDLMSKELTRYGPADAEHLGLHSIQDVLSDIAAATLTPHKLAAPAVTAVAPSAEVASVPATEEPAAAPAVREEEVLAAWGLGPVVTDGSEVEGIQAPPVGEVGEEGGEVSNEKVAIKRTYQPSTLKRKRKHGFLYRAKTRLGKKILRRRQDKGRWRLGI 231
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BLAST of mRNA_Ecto-sp13_S_contig6285.17025.1 vs. uniprot
Match: A0A836CKK1_9STRA (Ribosomal protein L34-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKK1_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 7.250e-11
Identity = 58/159 (36.48%), Postives = 83/159 (52.20%), Query Frame = 1 
Query:  226 MSKELTRYGPADAEHLGLHSIHDVLSDIAAATLTPHKLAAPTVTAVAPSAEVASVPASDEPAAAPAVRDEEVLAAWGLGPAVTDGSEVEGIQAPPVAEVGEEGGVVSNEKM-----AIKRTYQPSTLKRKRKHGFLYRAKTRLGKKILRRRQDKGRWRL 687
            M +++  +  A+A  LGL SI D+L+D    TL   +           SA  AS  A+ E    PA  + EV     + PA +   E + +  P  A     GG +   +M     A+KRT+QP+TL+RKRK GFL R   + G+KIL+RR++KGR RL
Sbjct:    1 MQEQIRNFVTAEARGLGLLSISDILADFDRITLADFRRGE------YGSARAASADAAHEVTLPPAAHEVEVEV---VAPAASAAVEQQRVGVPEDA-----GGAIQEPEMKPAVLAVKRTFQPNTLRRKRKLGFLARVGDKNGRKILQRRRNKGRTRL 145
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BLAST of mRNA_Ecto-sp13_S_contig6285.17025.1 vs. uniprot
Match: RL34_THEAB (50S ribosomal protein L34 n=7 Tax=Thermotogales TaxID=2419 RepID=RL34_THEAB)

HSP 1 Score: 59.3 bits (142), Expect = 1.260e-8
Identity = 28/44 (63.64%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:  562 IKRTYQPSTLKRKRKHGFLYRAKTRLGKKILRRRQDKGRWRLGI 693
            +KRTYQPS +KRKR HGFL R KT  G+K+L+ R+ KGRWRL +
Sbjct:    1 MKRTYQPSRIKRKRTHGFLARKKTAGGRKVLKNRRRKGRWRLAV 44
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BLAST of mRNA_Ecto-sp13_S_contig6285.17025.1 vs. uniprot
Match: A0A7V3ZUN1_9BACT (50S ribosomal protein L34 n=1 Tax=candidate division WOR-3 bacterium TaxID=2052148 RepID=A0A7V3ZUN1_9BACT)

HSP 1 Score: 59.3 bits (142), Expect = 1.290e-8
Identity = 28/43 (65.12%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:  565 KRTYQPSTLKRKRKHGFLYRAKTRLGKKILRRRQDKGRWRLGI 693
            KRTYQPS +KRKR HGFL R +T  G+K+L+RR+ KGRWRL +
Sbjct:    3 KRTYQPSRIKRKRTHGFLVRMRTPGGRKVLKRRRQKGRWRLTV 45
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BLAST of mRNA_Ecto-sp13_S_contig6285.17025.1 vs. uniprot
Match: A0A2N7Q8D5_9BACT (50S ribosomal protein L34 n=5 Tax=cellular organisms TaxID=131567 RepID=A0A2N7Q8D5_9BACT)

HSP 1 Score: 58.9 bits (141), Expect = 1.760e-8
Identity = 28/44 (63.64%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:  562 IKRTYQPSTLKRKRKHGFLYRAKTRLGKKILRRRQDKGRWRLGI 693
            +KRTYQPS +K KRKHGF  R KTR G++IL+ R+ KGRWRL +
Sbjct:    1 MKRTYQPSRIKMKRKHGFRARMKTRSGRRILKNRRKKGRWRLTV 44
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BLAST of mRNA_Ecto-sp13_S_contig6285.17025.1 vs. uniprot
Match: F8C4M3_THEGP (50S ribosomal protein L34 n=5 Tax=cellular organisms TaxID=131567 RepID=F8C4M3_THEGP)

HSP 1 Score: 58.5 bits (140), Expect = 2.440e-8
Identity = 28/44 (63.64%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:  562 IKRTYQPSTLKRKRKHGFLYRAKTRLGKKILRRRQDKGRWRLGI 693
            +KRTYQPS +K KR+HGF  R KTR G++ILR R+ KGRWRL +
Sbjct:    1 MKRTYQPSRIKMKRRHGFRARMKTRSGRRILRNRRRKGRWRLTV 44
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BLAST of mRNA_Ecto-sp13_S_contig6285.17025.1 vs. uniprot
Match: A0A2N7PKN3_9BACT (50S ribosomal protein L34 n=5 Tax=Thermodesulfobacteriaceae TaxID=188711 RepID=A0A2N7PKN3_9BACT)

HSP 1 Score: 58.5 bits (140), Expect = 2.500e-8
Identity = 29/43 (67.44%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:  565 KRTYQPSTLKRKRKHGFLYRAKTRLGKKILRRRQDKGRWRLGI 693
            KRTYQPS LK KRKHGF  R KTR G++IL+ R+ KGRWRL +
Sbjct:    3 KRTYQPSRLKMKRKHGFRARMKTRSGRRILKNRRRKGRWRLTV 45
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BLAST of mRNA_Ecto-sp13_S_contig6285.17025.1 vs. uniprot
Match: A0A7S3NIP4_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NIP4_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 3.380e-8
Identity = 28/45 (62.22%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:  553 KMAIKRTYQPSTLKRKRKHGFLYRAKTRLGKKILRRRQDKGRWRL 687
            K AIKRT+QPS ++RKRKHGFL R  ++ G+KI+ RR++KGRWR+
Sbjct:  113 KQAIKRTFQPSIIRRKRKHGFLSRINSKKGRKIINRRKNKGRWRI 157
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BLAST of mRNA_Ecto-sp13_S_contig6285.17025.1 vs. uniprot
Match: A0A2E9GUB9_9DELT (50S ribosomal protein L34 n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2E9GUB9_9DELT)

HSP 1 Score: 58.2 bits (139), Expect = 3.790e-8
Identity = 28/44 (63.64%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:  562 IKRTYQPSTLKRKRKHGFLYRAKTRLGKKILRRRQDKGRWRLGI 693
            +KRTYQPS ++R+RKHG+  R KTR G++ILRRR+ KGRWRL +
Sbjct:    1 MKRTYQPSRIRRRRKHGWRARMKTRGGREILRRRRAKGRWRLVV 44
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BLAST of mRNA_Ecto-sp13_S_contig6285.17025.1 vs. uniprot
Match: A0A7C5VXK2_9CHLR (50S ribosomal protein L34 n=3 Tax=Bacteria TaxID=2 RepID=A0A7C5VXK2_9CHLR)

HSP 1 Score: 57.8 bits (138), Expect = 4.830e-8
Identity = 27/43 (62.79%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:  565 KRTYQPSTLKRKRKHGFLYRAKTRLGKKILRRRQDKGRWRLGI 693
            KRTYQP  L+R+RKHGFL R  TR G+ +L+RR+ KGRWRL +
Sbjct:    3 KRTYQPKNLRRQRKHGFLARMATRGGRLVLKRRRQKGRWRLAV 45
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6285.17025.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKX2_ECTSI4.420e-14593.94Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CKK1_9STRA7.250e-1136.48Ribosomal protein L34-domain-containing protein n=... [more]
RL34_THEAB1.260e-863.6450S ribosomal protein L34 n=7 Tax=Thermotogales Ta... [more]
A0A7V3ZUN1_9BACT1.290e-865.1250S ribosomal protein L34 n=1 Tax=candidate divisi... [more]
A0A2N7Q8D5_9BACT1.760e-863.6450S ribosomal protein L34 n=5 Tax=cellular organis... [more]
F8C4M3_THEGP2.440e-863.6450S ribosomal protein L34 n=5 Tax=cellular organis... [more]
A0A2N7PKN3_9BACT2.500e-867.4450S ribosomal protein L34 n=5 Tax=Thermodesulfobac... [more]
A0A7S3NIP4_9STRA3.380e-862.22Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A2E9GUB9_9DELT3.790e-863.6450S ribosomal protein L34 n=1 Tax=Deltaproteobacte... [more]
A0A7C5VXK2_9CHLR4.830e-862.7950S ribosomal protein L34 n=3 Tax=Bacteria TaxID=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6285contigEcto-sp13_S_contig6285:2148..4709 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score61.2
Seed ortholog evalue7.2e-07
Seed eggNOG ortholog227086.JGI_V11_43603
Model size696
KEGG koko:K02914
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
Hectar predicted targeting categorymitochondrion
Exons2
EggNOG free text desc.Ribosomal protein L34
EggNOG OGs2E5A0@1,2SC40@2759
Ec32 ortholog descriptionRibosomal protein L34
Ec32 orthologEc-17_001690.1
Cds size696
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463873.0216866-CDS-Ecto-sp13_S_contig6285:2147..23221681463873.0216866-CDS-Ecto-sp13_S_contig6285:2147..2322Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6285 2148..2322 +
1681463873.0361245-CDS-Ecto-sp13_S_contig6285:4188..47091681463873.0361245-CDS-Ecto-sp13_S_contig6285:4188..4709Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6285 4189..4709 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6285.17025.1prot_Ecto-sp13_S_contig6285.17025.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6285 2148..4709 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6285.17025.1

>prot_Ecto-sp13_S_contig6285.17025.1 ID=prot_Ecto-sp13_S_contig6285.17025.1|Name=mRNA_Ecto-sp13_S_contig6285.17025.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=232bp
MALRSLSRAGVEMGARVAGTGSKCCRVPHATRHVRGAERKMSSIVGQGPG
HQAPSFRQGSLSAGTQLFKLVETDLMSKELTRYGPADAEHLGLHSIHDVL
SDIAAATLTPHKLAAPTVTAVAPSAEVASVPASDEPAAAPAVRDEEVLAA
WGLGPAVTDGSEVEGIQAPPVAEVGEEGGVVSNEKMAIKRTYQPSTLKRK
RKHGFLYRAKTRLGKKILRRRQDKGRWRLGI*
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mRNA from alignment at Ecto-sp13_S_contig6285:2148..4709+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6285.17025.1 ID=mRNA_Ecto-sp13_S_contig6285.17025.1|Name=mRNA_Ecto-sp13_S_contig6285.17025.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2562bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6285:2148..4709+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGCTCAGGTCCTTGAGCCGAGCCGGGGTTGAAATGGGTGCGAGGGT
AGCTGGAACGGGCAGCAAGTGTTGTCGGGTGCCTCACGCCACCAGGCACG
TACGTGGGGCTGAGCGGAAGATGTCATCCATCGTCGGGCAGGGGCCGGGT
CACCAAGCTCCGTCTTTCCGACAAGGTAGGACCTTTATCTAGAGGTGCTT
GATATCCTCTCCTGTTGAGTATGGAAGCACCATGAAGCTTCGTGGACTTG
AAAAATGGTCTTGGTTCGCTCCCCTCCGCTGTTGCCTCCTCGTCTCCGGC
GGTTTTCCCCTCTGATCCTCCAAATCGCCATTTCAAGAAACTCAATCAAG
AAGGCCTGCTGCCTCGTTGTCAAGCTACAATTGTGTGTTATTTCGTTGCC
AGTCAGTGCTTTTTTATTCGGTTCGCGTTCGTTCGCATAGGGGACGGAGC
ACACGTCATCGCTAAACACAACAGGCAGTATTACTAGCAGCGAGGCAGCG
GTGTACAAATACAACGTAGGCTGAGCAGCGAGCTGGCCTAGTTTTAAAAG
TAGTAGGTATAGGTATGTTCTCGGCCAGGATGTCTGGCAGTCTCACCAGT
AAGGATTGAGTGAGACCTGCTGCTGCAGAGGGATGTCTGCTAGACAATGT
CTGCTGTTGCTTCTCCGTGCCTGTGTCTCGTGTCGCAAAACGTCACCGGC
TGTGTCGGCTCTGTACCCACACCTTAACCTTTGATAAGGTCGATGGTTGC
AGCGTTGCAGCGTCCAGCTCACACCAGTATTCCGAGTACACTTGAAACAA
AGGCAGAGATGGCTCTCTCCATAGGCAGAGACAAGCACATGTGGCCGTCA
GGCATACATAGTTGACATGAAGAAAAGTAGGGGAGGTGATCGTGTTTGAC
TCGTTCGGACGTTCGGACGAAGAGCAATTTTCGAAACGGGAAGGAAGGCA
CACGCCGACGCACCCCCATCAACAACTTGTACATGTTGTAAAGCGCGCAA
CCCTGCCCAGTCTACGAGAGGCACACAAATAACAAACAACACTGGCTGGT
GTCGATGTACATCGCTGTCCATCGGTACGCGCTCATTCCACAGCGCCGAC
CAGCCGCCTGCCGACCTTCACGAAGTTCAACCTCTCGCCCTCCTGTGAAC
GGACGGTGTATTGTGTTTGTATTTGCTGTGCAGCCAGTTTACTTGCCAAT
ATCCCTCTGGCAGTGTCGGGTTTAGCTTCCGTTCGTACATGAGCAACTGT
TTTTGCCAATTAGCAACGAAATCGGTATTTGTATCTCGTGTGTCCTCCAT
TGATATGTGCGTTGAATCTCTTGTTTGTGCTGGAGTGTGGGATTCACGCA
GTGGTTACTGCTGTTGAGTTCATGCTTTCTCTCTCGCTTTCCGTGTTTAC
CCTTGTCTACTTTTTTGCAGTTCGTGTTGTGCATGACGCAGGAGAATCGT
TACCCCTTTGAACAGCAGGAAGGCTCAAACACCGAAATCTTTATAGTTCG
AGGTATACTCTGCTTTGTGTCTGCTCGCACGATCGAGATGAAGCGACGCA
GGGAAGGTATTTGGTTGGCCATTTCTCGAACAAGGCACTTAGTCGGAGGT
TGGACACAGCACTGACTTTCCCATTTGTTATAATAGTACAACGGGCAAGT
GCCATTTCCGCGCCAGTCGGGATGGCGTGTAAAGTTGGTGTGTGTGATAC
ATGGATTACGGGTGTGGATCAGTTGCATCGTTACACCTATCACTTTATCC
ATTCAAATCGCATCCGTCAAAGGAAGCTATGGATGATAAGCCAGTAGGCT
GAACAGATCATGCGACGTGGGCTGATCGAACCGATAGACATGTTCACAAG
CAGTAGGACCCAAAAGGGTACCGTTTGTGCTGCGGTATACCCTTTGCTAT
GCATGCGAAACTTCATCAATTTAGCCGAAAAGTTCTCGACAAGCCCCTCG
GCAACCATGTGCATGTCGTTCATTTTTGGTACCCGCCTCCCGGGCATTGC
CGCCAACTTCCGTTTTTCGTCGTCGCGCGACTTTTGCGCAGGGTCGTTGA
GTGCCGGAACGCAGCTGTTTAAGCTTGTGGAGACGGACCTCATGTCCAAG
GAGCTCACTCGTTACGGTCCTGCCGATGCCGAACATTTGGGGCTGCACTC
TATACATGATGTGCTGTCCGACATCGCCGCCGCCACCCTCACGCCCCACA
AGCTCGCCGCACCTACCGTCACTGCGGTTGCTCCGTCTGCCGAAGTGGCG
TCTGTGCCGGCTTCGGACGAGCCGGCAGCAGCGCCAGCTGTGCGAGATGA
AGAAGTGCTTGCCGCATGGGGGCTGGGACCTGCGGTGACAGACGGTTCCG
AGGTTGAGGGCATACAAGCACCTCCTGTGGCAGAGGTCGGGGAAGAGGGA
GGGGTGGTATCGAACGAGAAGATGGCAATCAAGCGCACTTATCAGCCGAG
CACTCTCAAGAGAAAGAGGAAGCATGGCTTCCTGTACCGCGCCAAGACTC
GCCTGGGCAAGAAGATTCTGCGAAGGCGTCAAGACAAGGGTCGCTGGAGG
CTGGGCATCTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6285:2148..4709+

>mRNA_Ecto-sp13_S_contig6285.17025.1 ID=mRNA_Ecto-sp13_S_contig6285.17025.1|Name=mRNA_Ecto-sp13_S_contig6285.17025.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=696bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6285:2148..4709+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGCTCAGGTCCTTGAGCCGAGCCGGGGTTGAAATGGGTGCGAGGGT
AGCTGGAACGGGCAGCAAGTGTTGTCGGGTGCCTCACGCCACCAGGCACG
TACGTGGGGCTGAGCGGAAGATGTCATCCATCGTCGGGCAGGGGCCGGGT
CACCAAGCTCCGTCTTTCCGACAAGGGTCGTTGAGTGCCGGAACGCAGCT
GTTTAAGCTTGTGGAGACGGACCTCATGTCCAAGGAGCTCACTCGTTACG
GTCCTGCCGATGCCGAACATTTGGGGCTGCACTCTATACATGATGTGCTG
TCCGACATCGCCGCCGCCACCCTCACGCCCCACAAGCTCGCCGCACCTAC
CGTCACTGCGGTTGCTCCGTCTGCCGAAGTGGCGTCTGTGCCGGCTTCGG
ACGAGCCGGCAGCAGCGCCAGCTGTGCGAGATGAAGAAGTGCTTGCCGCA
TGGGGGCTGGGACCTGCGGTGACAGACGGTTCCGAGGTTGAGGGCATACA
AGCACCTCCTGTGGCAGAGGTCGGGGAAGAGGGAGGGGTGGTATCGAACG
AGAAGATGGCAATCAAGCGCACTTATCAGCCGAGCACTCTCAAGAGAAAG
AGGAAGCATGGCTTCCTGTACCGCGCCAAGACTCGCCTGGGCAAGAAGAT
TCTGCGAAGGCGTCAAGACAAGGGTCGCTGGAGGCTGGGCATCTAA
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