prot_Ecto-sp13_S_contig6285.17025.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig6285.17025.1
Unique Nameprot_Ecto-sp13_S_contig6285.17025.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length232
Homology
BLAST of mRNA_Ecto-sp13_S_contig6285.17025.1 vs. uniprot
Match: D7FKX2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKX2_ECTSI)

HSP 1 Score: 413 bits (1061), Expect = 4.420e-145
Identity = 217/231 (93.94%), Postives = 223/231 (96.54%), Query Frame = 0
Query:    1 MALRSLSRAGVEMGARVAGTGSKCCRVPHATRHVRGAERKMSSIVGQGPGHQAPSFRQGSLSAGTQLFKLVETDLMSKELTRYGPADAEHLGLHSIHDVLSDIAAATLTPHKLAAPTVTAVAPSAEVASVPASDEPAAAPAVRDEEVLAAWGLGPAVTDGSEVEGIQAPPVAEVGEEGGVVSNEKMAIKRTYQPSTLKRKRKHGFLYRAKTRLGKKILRRRQDKGRWRLGI 231
            MALRSLSRAGVEMGARV GTGSKCCRVPHATRHV GAERKMSS+VGQGPGH+APSFRQGSL AGTQLFKLVETDLMSKELTRYGPADAEHLGLHSI DVLSDIAAATLTPHKLAAP VTAVAPSAEVASVPA++EPAAAPAVR+EEVLAAWGLGP VTDGSEVEGIQAPPV EVGEEGG VSNEK+AIKRTYQPSTLKRKRKHGFLYRAKTRLGKKILRRRQDKGRWRLGI
Sbjct:    1 MALRSLSRAGVEMGARVVGTGSKCCRVPHATRHVGGAERKMSSVVGQGPGHRAPSFRQGSLGAGTQLFKLVETDLMSKELTRYGPADAEHLGLHSIQDVLSDIAAATLTPHKLAAPAVTAVAPSAEVASVPATEEPAAAPAVREEEVLAAWGLGPVVTDGSEVEGIQAPPVGEVGEEGGEVSNEKVAIKRTYQPSTLKRKRKHGFLYRAKTRLGKKILRRRQDKGRWRLGI 231          
BLAST of mRNA_Ecto-sp13_S_contig6285.17025.1 vs. uniprot
Match: A0A836CKK1_9STRA (Ribosomal protein L34-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKK1_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 7.250e-11
Identity = 58/159 (36.48%), Postives = 83/159 (52.20%), Query Frame = 0
Query:   76 MSKELTRYGPADAEHLGLHSIHDVLSDIAAATLTPHKLAAPTVTAVAPSAEVASVPASDEPAAAPAVRDEEVLAAWGLGPAVTDGSEVEGIQAPPVAEVGEEGGVVSNEKM-----AIKRTYQPSTLKRKRKHGFLYRAKTRLGKKILRRRQDKGRWRL 229
            M +++  +  A+A  LGL SI D+L+D    TL   +           SA  AS  A+ E    PA  + EV     + PA +   E + +  P  A     GG +   +M     A+KRT+QP+TL+RKRK GFL R   + G+KIL+RR++KGR RL
Sbjct:    1 MQEQIRNFVTAEARGLGLLSISDILADFDRITLADFRRGE------YGSARAASADAAHEVTLPPAAHEVEVEV---VAPAASAAVEQQRVGVPEDA-----GGAIQEPEMKPAVLAVKRTFQPNTLRRKRKLGFLARVGDKNGRKILQRRRNKGRTRL 145          
BLAST of mRNA_Ecto-sp13_S_contig6285.17025.1 vs. uniprot
Match: RL34_THEAB (50S ribosomal protein L34 n=7 Tax=Thermotogales TaxID=2419 RepID=RL34_THEAB)

HSP 1 Score: 59.3 bits (142), Expect = 1.260e-8
Identity = 28/44 (63.64%), Postives = 35/44 (79.55%), Query Frame = 0
Query:  188 IKRTYQPSTLKRKRKHGFLYRAKTRLGKKILRRRQDKGRWRLGI 231
            +KRTYQPS +KRKR HGFL R KT  G+K+L+ R+ KGRWRL +
Sbjct:    1 MKRTYQPSRIKRKRTHGFLARKKTAGGRKVLKNRRRKGRWRLAV 44          
BLAST of mRNA_Ecto-sp13_S_contig6285.17025.1 vs. uniprot
Match: A0A7V3ZUN1_9BACT (50S ribosomal protein L34 n=1 Tax=candidate division WOR-3 bacterium TaxID=2052148 RepID=A0A7V3ZUN1_9BACT)

HSP 1 Score: 59.3 bits (142), Expect = 1.290e-8
Identity = 28/43 (65.12%), Postives = 35/43 (81.40%), Query Frame = 0
Query:  189 KRTYQPSTLKRKRKHGFLYRAKTRLGKKILRRRQDKGRWRLGI 231
            KRTYQPS +KRKR HGFL R +T  G+K+L+RR+ KGRWRL +
Sbjct:    3 KRTYQPSRIKRKRTHGFLVRMRTPGGRKVLKRRRQKGRWRLTV 45          
BLAST of mRNA_Ecto-sp13_S_contig6285.17025.1 vs. uniprot
Match: A0A2N7Q8D5_9BACT (50S ribosomal protein L34 n=5 Tax=cellular organisms TaxID=131567 RepID=A0A2N7Q8D5_9BACT)

HSP 1 Score: 58.9 bits (141), Expect = 1.760e-8
Identity = 28/44 (63.64%), Postives = 35/44 (79.55%), Query Frame = 0
Query:  188 IKRTYQPSTLKRKRKHGFLYRAKTRLGKKILRRRQDKGRWRLGI 231
            +KRTYQPS +K KRKHGF  R KTR G++IL+ R+ KGRWRL +
Sbjct:    1 MKRTYQPSRIKMKRKHGFRARMKTRSGRRILKNRRKKGRWRLTV 44          
BLAST of mRNA_Ecto-sp13_S_contig6285.17025.1 vs. uniprot
Match: F8C4M3_THEGP (50S ribosomal protein L34 n=5 Tax=cellular organisms TaxID=131567 RepID=F8C4M3_THEGP)

HSP 1 Score: 58.5 bits (140), Expect = 2.440e-8
Identity = 28/44 (63.64%), Postives = 35/44 (79.55%), Query Frame = 0
Query:  188 IKRTYQPSTLKRKRKHGFLYRAKTRLGKKILRRRQDKGRWRLGI 231
            +KRTYQPS +K KR+HGF  R KTR G++ILR R+ KGRWRL +
Sbjct:    1 MKRTYQPSRIKMKRRHGFRARMKTRSGRRILRNRRRKGRWRLTV 44          
BLAST of mRNA_Ecto-sp13_S_contig6285.17025.1 vs. uniprot
Match: A0A2N7PKN3_9BACT (50S ribosomal protein L34 n=5 Tax=Thermodesulfobacteriaceae TaxID=188711 RepID=A0A2N7PKN3_9BACT)

HSP 1 Score: 58.5 bits (140), Expect = 2.500e-8
Identity = 29/43 (67.44%), Postives = 34/43 (79.07%), Query Frame = 0
Query:  189 KRTYQPSTLKRKRKHGFLYRAKTRLGKKILRRRQDKGRWRLGI 231
            KRTYQPS LK KRKHGF  R KTR G++IL+ R+ KGRWRL +
Sbjct:    3 KRTYQPSRLKMKRKHGFRARMKTRSGRRILKNRRRKGRWRLTV 45          
BLAST of mRNA_Ecto-sp13_S_contig6285.17025.1 vs. uniprot
Match: A0A7S3NIP4_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NIP4_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 3.380e-8
Identity = 28/45 (62.22%), Postives = 38/45 (84.44%), Query Frame = 0
Query:  185 KMAIKRTYQPSTLKRKRKHGFLYRAKTRLGKKILRRRQDKGRWRL 229
            K AIKRT+QPS ++RKRKHGFL R  ++ G+KI+ RR++KGRWR+
Sbjct:  113 KQAIKRTFQPSIIRRKRKHGFLSRINSKKGRKIINRRKNKGRWRI 157          
BLAST of mRNA_Ecto-sp13_S_contig6285.17025.1 vs. uniprot
Match: A0A2E9GUB9_9DELT (50S ribosomal protein L34 n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2E9GUB9_9DELT)

HSP 1 Score: 58.2 bits (139), Expect = 3.790e-8
Identity = 28/44 (63.64%), Postives = 37/44 (84.09%), Query Frame = 0
Query:  188 IKRTYQPSTLKRKRKHGFLYRAKTRLGKKILRRRQDKGRWRLGI 231
            +KRTYQPS ++R+RKHG+  R KTR G++ILRRR+ KGRWRL +
Sbjct:    1 MKRTYQPSRIRRRRKHGWRARMKTRGGREILRRRRAKGRWRLVV 44          
BLAST of mRNA_Ecto-sp13_S_contig6285.17025.1 vs. uniprot
Match: A0A7C5VXK2_9CHLR (50S ribosomal protein L34 n=3 Tax=Bacteria TaxID=2 RepID=A0A7C5VXK2_9CHLR)

HSP 1 Score: 57.8 bits (138), Expect = 4.830e-8
Identity = 27/43 (62.79%), Postives = 34/43 (79.07%), Query Frame = 0
Query:  189 KRTYQPSTLKRKRKHGFLYRAKTRLGKKILRRRQDKGRWRLGI 231
            KRTYQP  L+R+RKHGFL R  TR G+ +L+RR+ KGRWRL +
Sbjct:    3 KRTYQPKNLRRQRKHGFLARMATRGGRLVLKRRRQKGRWRLAV 45          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6285.17025.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKX2_ECTSI4.420e-14593.94Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CKK1_9STRA7.250e-1136.48Ribosomal protein L34-domain-containing protein n=... [more]
RL34_THEAB1.260e-863.6450S ribosomal protein L34 n=7 Tax=Thermotogales Ta... [more]
A0A7V3ZUN1_9BACT1.290e-865.1250S ribosomal protein L34 n=1 Tax=candidate divisi... [more]
A0A2N7Q8D5_9BACT1.760e-863.6450S ribosomal protein L34 n=5 Tax=cellular organis... [more]
F8C4M3_THEGP2.440e-863.6450S ribosomal protein L34 n=5 Tax=cellular organis... [more]
A0A2N7PKN3_9BACT2.500e-867.4450S ribosomal protein L34 n=5 Tax=Thermodesulfobac... [more]
A0A7S3NIP4_9STRA3.380e-862.22Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A2E9GUB9_9DELT3.790e-863.6450S ribosomal protein L34 n=1 Tax=Deltaproteobacte... [more]
A0A7C5VXK2_9CHLR4.830e-862.7950S ribosomal protein L34 n=3 Tax=Bacteria TaxID=2... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000271Ribosomal protein L34TIGRFAMTIGR01030TIGR01030coord: 189..230
e-value: 1.5E-15
score: 55.1
IPR000271Ribosomal protein L34PFAMPF00468Ribosomal_L34coord: 189..229
e-value: 7.3E-18
score: 64.3
IPR000271Ribosomal protein L34PANTHERPTHR14503MITOCHONDRIAL RIBOSOMAL PROTEIN 34 FAMILY MEMBERcoord: 101..229
IPR000271Ribosomal protein L34HAMAPMF_00391Ribosomal_L34coord: 188..231
score: 13.207
IPR020939Ribosomal protein L34, conserved sitePROSITEPS00784RIBOSOMAL_L34coord: 189..208
NoneNo IPR availablePRODOMPD003101coord: 191..226
e-value: 1.0E-6
score: 124.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6285contigEcto-sp13_S_contig6285:2148..4709 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6285.17025.1mRNA_Ecto-sp13_S_contig6285.17025.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig6285 2148..4709 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig6285.17025.1 ID=prot_Ecto-sp13_S_contig6285.17025.1|Name=mRNA_Ecto-sp13_S_contig6285.17025.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=232bp
MALRSLSRAGVEMGARVAGTGSKCCRVPHATRHVRGAERKMSSIVGQGPG
HQAPSFRQGSLSAGTQLFKLVETDLMSKELTRYGPADAEHLGLHSIHDVL
SDIAAATLTPHKLAAPTVTAVAPSAEVASVPASDEPAAAPAVRDEEVLAA
WGLGPAVTDGSEVEGIQAPPVAEVGEEGGVVSNEKMAIKRTYQPSTLKRK
RKHGFLYRAKTRLGKKILRRRQDKGRWRLGI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000271Ribosomal_L34
IPR020939Ribosomal_L34_CS