mRNA_Ecto-sp13_S_contig62847.17024.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig62847.17024.1
Unique NamemRNA_Ecto-sp13_S_contig62847.17024.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig62847.17024.1 vs. uniprot
Match: A0A6H5JFV9_9PHAE (EF1_GNE domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JFV9_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 9.180e-26
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 1 
Query:    1 MATACDISFDEMAMALSYISLGGIAAAPASSARGLPSLAPVKQEKKAAKKPEADDEV 171
            MATACDISFDEMAMALSYISLGG AAAPASSARGLPSLAPVKQEKKAAKKPEADDEV
Sbjct:    1 MATACDISFDEMAMALSYISLGGTAAAPASSARGLPSLAPVKQEKKAAKKPEADDEV 57
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig62847.17024.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JFV9_9PHAE9.180e-2698.25EF1_GNE domain-containing protein n=3 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig62847contigEcto-sp13_S_contig62847:567..746 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score82.8
Seed ortholog evalue6e-14
Seed eggNOG ortholog2880.D8LCD3
Preferred nameCARS
Model size180
KEGG rclassRC00055,RC00523
KEGG koko:K01866,ko:K01868,ko:K01873,ko:K01875,ko:K01883,ko:K03232,ko:K15410
KEGG ReactionR02918,R03650,R03662,R03663,R03665,R08218
KEGG Pathwayko00970,ko05168,map00970,map05168
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000049,GO:0000166,GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0003824,GO:0004812,GO:0004817,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005853,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006414,GO:0006418,GO:0006423,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008135,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0042802,GO:0042803,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046983,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576
Exons1
EggNOG free text desc.translation elongation factor activity
EggNOG OGsCOG2092@1,KOG1668@2759
EC6.1.1.1,6.1.1.11,6.1.1.16,6.1.1.3,6.1.1.9
Cds size180
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03012,ko03016,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463872.984046-CDS-Ecto-sp13_S_contig62847:566..7461681463872.984046-CDS-Ecto-sp13_S_contig62847:566..746Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig62847 567..746 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig62847.17024.1prot_Ecto-sp13_S_contig62847.17024.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig62847 567..746 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig62847.17024.1

>prot_Ecto-sp13_S_contig62847.17024.1 ID=prot_Ecto-sp13_S_contig62847.17024.1|Name=mRNA_Ecto-sp13_S_contig62847.17024.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=60bp
MATACDISFDEMAMALSYISLGGIAAAPASSARGLPSLAPVKQEKKAAKK
PEADDEVRR*
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mRNA from alignment at Ecto-sp13_S_contig62847:567..746-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig62847.17024.1 ID=mRNA_Ecto-sp13_S_contig62847.17024.1|Name=mRNA_Ecto-sp13_S_contig62847.17024.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=180bp|location=Sequence derived from alignment at Ecto-sp13_S_contig62847:567..746- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCACCGCTTGCGATATTTCGTTCGATGAGATGGCCATGGCCTTGAG
CTACATTTCCCTTGGTGGTATCGCGGCCGCACCAGCGAGCTCCGCGCGAG
GGTTGCCATCCTTGGCACCAGTGAAGCAGGAGAAGAAGGCCGCCAAGAAG
CCCGAGGCTGACGACGAGGTGAGAAGATAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig62847:567..746-

>mRNA_Ecto-sp13_S_contig62847.17024.1 ID=mRNA_Ecto-sp13_S_contig62847.17024.1|Name=mRNA_Ecto-sp13_S_contig62847.17024.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=180bp|location=Sequence derived from alignment at Ecto-sp13_S_contig62847:567..746- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCACCGCTTGCGATATTTCGTTCGATGAGATGGCCATGGCCTTGAG
CTACATTTCCCTTGGTGGTATCGCGGCCGCACCAGCGAGCTCCGCGCGAG
GGTTGCCATCCTTGGCACCAGTGAAGCAGGAGAAGAAGGCCGCCAAGAAG
CCCGAGGCTGACGACGAGGTGAGAAGATAA
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