mRNA_Ecto-sp13_S_contig6279.17016.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6279.17016.1
Unique NamemRNA_Ecto-sp13_S_contig6279.17016.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6279.17016.1 vs. uniprot
Match: D7FWU7_ECTSI (EF-hand, calcium binding motif n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWU7_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 4.580e-7
Identity = 32/36 (88.89%), Postives = 33/36 (91.67%), Query Frame = 1 
Query:  211 MSERAPWLAGSSRGSNNNSGGRKGSSLETATKVLAS 318
            MSERAPW AGSSRGSNN SGGR+GSSLETATK LAS
Sbjct:    1 MSERAPWPAGSSRGSNN-SGGRRGSSLETATKGLAS 35
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6279.17016.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FWU7_ECTSI4.580e-788.89EF-hand, calcium binding motif n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6279contigEcto-sp13_S_contig6279:5704..6726 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size319
Hectar predicted targeting categoryother localisation
Exons2
Cds size318
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463871.8205059-CDS-Ecto-sp13_S_contig6279:5703..58211681463871.8205059-CDS-Ecto-sp13_S_contig6279:5703..5821Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6279 5704..5821 -
1681463871.831878-CDS-Ecto-sp13_S_contig6279:6526..67261681463871.831878-CDS-Ecto-sp13_S_contig6279:6526..6726Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6279 6527..6726 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6279.17016.1prot_Ecto-sp13_S_contig6279.17016.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6279 5704..6726 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6279.17016.1

>prot_Ecto-sp13_S_contig6279.17016.1 ID=prot_Ecto-sp13_S_contig6279.17016.1|Name=mRNA_Ecto-sp13_S_contig6279.17016.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=106bp
RDSSARGSRASGRRGPADGAEDDGGGAAAAAVRRLSMTSGRDGFSLVPAF
SGNVAVDGGVDSSRLTWTNPMSERAPWLAGSSRGSNNNSGGRKGSSLETA
TKVLAS
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mRNA from alignment at Ecto-sp13_S_contig6279:5704..6726-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6279.17016.1 ID=mRNA_Ecto-sp13_S_contig6279.17016.1|Name=mRNA_Ecto-sp13_S_contig6279.17016.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1023bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6279:5704..6726- (Ectocarpus species13 EcNAP12_S_4_19m)
AGAGACAGCAGTGCTCGTGGTTCTCGGGCAAGCGGCAGGAGGGGCCCCGC
AGACGGTGCCGAAGACGACGGGGGGGGTGCTGCTGCTGCGGCCGTGAGAA
GGCTGTCGATGACCTCAGGCAGGGATGGTTTCAGCCTCGTGCCGGCCTTC
TCGGGAAACGTCGCCGTCGACGGGGGCGTTGACTCCTCGCGCCTGACCTG
GTGGGTTAGGGTTAGGTCTAGGGTTAGGTTTAGGGCATACGGCCGCCGAG
ACAATCATGATGTAACTCTGAATTTATTCGTATTGCAAATTCATCCTCTC
CTCGCGCCTGACCTGGTGGGATAGGTTCAGGGTTAGGGCATACGGCCGCC
GCGACGATCATGATAATATACCTCTGAATGCATTCATTGCTAACCTATCC
TCTCCTGGCGCCTGAACTAGCGGGTTAGGCAAGGGTTAGACTAGGATTAG
GGCATACGGCCGCCGCGACGCTCATGATATGCCTCTGAATTAATTCATGG
CTTATTCACCCTCTCCTCACGTCTGACCTGGTGGATTAGGGTTACGGTTT
GGGTTGGGGTTAGGGCATTGCACCGCCGTGACGCTCATGATAAATATTGA
CAATACATCCCGGAAGTGTTTTTCAGTGAACAGAGAACGAGTTAGTTCGT
TGTCTTCTTTCATTTTTCGTTGCTAGTTTGTCCTGGTACTCTGCTGCCGT
TCATAGACGCAGCCATCCATGATTTTTCTTGACGAAAGAGAAACACAGCA
GGGCCTTCGGGGCACCCACAATGCCGCCTTTCTTTGCACCCGGCCGTTCA
TGACCTTTTCACGGCCCCTCGCCCCCACGCAAGGCACGACGGTTTTGCAG
CAATGCACACACACTACCAACAAGCAGTTACAGCGCGTGATGAAAATCTT
TGCAGGACCAACCCGATGTCTGAACGGGCTCCGTGGCTCGCCGGGTCCTC
CCGCGGGAGCAACAACAACAGCGGTGGCAGAAAAGGCTCCTCCCTGGAAA
CAGCGACGAAGGTGTTGGCCTCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6279:5704..6726-

>mRNA_Ecto-sp13_S_contig6279.17016.1 ID=mRNA_Ecto-sp13_S_contig6279.17016.1|Name=mRNA_Ecto-sp13_S_contig6279.17016.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=318bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6279:5704..6726- (Ectocarpus species13 EcNAP12_S_4_19m)
AGAGACAGCAGTGCTCGTGGTTCTCGGGCAAGCGGCAGGAGGGGCCCCGC
AGACGGTGCCGAAGACGACGGGGGGGGTGCTGCTGCTGCGGCCGTGAGAA
GGCTGTCGATGACCTCAGGCAGGGATGGTTTCAGCCTCGTGCCGGCCTTC
TCGGGAAACGTCGCCGTCGACGGGGGCGTTGACTCCTCGCGCCTGACCTG
GACCAACCCGATGTCTGAACGGGCTCCGTGGCTCGCCGGGTCCTCCCGCG
GGAGCAACAACAACAGCGGTGGCAGAAAAGGCTCCTCCCTGGAAACAGCG
ACGAAGGTGTTGGCCTCG
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