mRNA_Ecto-sp13_S_contig6275.17012.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6275.17012.1
Unique NamemRNA_Ecto-sp13_S_contig6275.17012.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6275.17012.1 vs. uniprot
Match: A0A6H5JFD8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFD8_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 1.930e-8
Identity = 31/32 (96.88%), Postives = 31/32 (96.88%), Query Frame = 1 
Query:    1 MNRQQQLSRGASPEAVFAKRRGEIPYQIYFEV 96
            MNRQQQLSRG SPEAVFAKRRGEIPYQIYFEV
Sbjct:    1 MNRQQQLSRGPSPEAVFAKRRGEIPYQIYFEV 32
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6275.17012.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JFD8_9PHAE1.930e-896.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6275contigEcto-sp13_S_contig6275:547..1157 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size611
Hectar predicted targeting categoryother localisation
Exons1
Cds size447
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463871.5203915-CDS-Ecto-sp13_S_contig6275:546..9931681463871.5203915-CDS-Ecto-sp13_S_contig6275:546..993Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6275 547..993 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463871.5319426-UTR-Ecto-sp13_S_contig6275:993..11571681463871.5319426-UTR-Ecto-sp13_S_contig6275:993..1157Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6275 994..1157 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6275.17012.1prot_Ecto-sp13_S_contig6275.17012.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6275 547..993 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6275.17012.1

>prot_Ecto-sp13_S_contig6275.17012.1 ID=prot_Ecto-sp13_S_contig6275.17012.1|Name=mRNA_Ecto-sp13_S_contig6275.17012.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=149bp
MNRQQQLSRGASPEAVFAKRRGEIPYQIYFEVRYDDSQPRIPSFLLYLPI
SLSLAPLLFAFDARESKSDRSRTRRARERGSIRCCAIYIPFLLLRAFVAN
FASGMLSQPLVVPQAPGQWRGPVPKKFGTAPLRPAVGSGTFCCGRVPL*
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mRNA from alignment at Ecto-sp13_S_contig6275:547..1157+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6275.17012.1 ID=mRNA_Ecto-sp13_S_contig6275.17012.1|Name=mRNA_Ecto-sp13_S_contig6275.17012.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=611bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6275:547..1157+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACCGGCAGCAGCAGCTATCACGGGGTGCATCGCCCGAGGCGGTCTT
TGCCAAGAGGAGAGGAGAGATCCCTTATCAGATATACTTCGAAGTCAGGT
ATGACGATTCGCAGCCAAGAATTCCGAGTTTTTTGCTGTACCTCCCCATC
TCTCTCTCTCTCGCCCCTCTCTTGTTCGCTTTTGACGCCAGAGAGTCAAA
GAGCGATCGGTCTCGAACACGAAGGGCTAGAGAGAGGGGCAGCATAAGAT
GTTGCGCCATCTACATCCCTTTTCTTCTTCTTCGCGCCTTTGTCGCGAAC
TTTGCCTCGGGTATGCTTAGCCAGCCCCTTGTTGTTCCGCAAGCCCCTGG
TCAATGGCGTGGCCCTGTGCCAAAAAAGTTCGGCACGGCCCCGCTCCGCC
CGGCAGTGGGTTCAGGAACATTTTGTTGTGGTCGTGTGCCTCTCTAGCTC
TGTGGTGGTATGCGGTGCCCGCACCCCCTGCCACACTGCTGTTATGTCGC
AGAGAGGACGCCCCTGTTTTGGGTACCAAATCATCCCTACTAGACTGCGA
AAGTGTAATCTCTAGAATACCGGTGTATTCGGTTTCCGTTGTGCGCGATT
CAAAAGCTTGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6275:547..1157+

>mRNA_Ecto-sp13_S_contig6275.17012.1 ID=mRNA_Ecto-sp13_S_contig6275.17012.1|Name=mRNA_Ecto-sp13_S_contig6275.17012.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=447bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6275:547..1157+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACCGGCAGCAGCAGCTATCACGGGGTGCATCGCCCGAGGCGGTCTT
TGCCAAGAGGAGAGGAGAGATCCCTTATCAGATATACTTCGAAGTCAGGT
ATGACGATTCGCAGCCAAGAATTCCGAGTTTTTTGCTGTACCTCCCCATC
TCTCTCTCTCTCGCCCCTCTCTTGTTCGCTTTTGACGCCAGAGAGTCAAA
GAGCGATCGGTCTCGAACACGAAGGGCTAGAGAGAGGGGCAGCATAAGAT
GTTGCGCCATCTACATCCCTTTTCTTCTTCTTCGCGCCTTTGTCGCGAAC
TTTGCCTCGGGTATGCTTAGCCAGCCCCTTGTTGTTCCGCAAGCCCCTGG
TCAATGGCGTGGCCCTGTGCCAAAAAAGTTCGGCACGGCCCCGCTCCGCC
CGGCAGTGGGTTCAGGAACATTTTGTTGTGGTCGTGTGCCTCTCTAG
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