prot_Ecto-sp13_S_contig6275.17012.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig6275.17012.1
Unique Nameprot_Ecto-sp13_S_contig6275.17012.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length149
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6275.17012.1 vs. uniprot
Match: A0A6H5JFD8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFD8_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 4.820e-9
Identity = 31/32 (96.88%), Postives = 31/32 (96.88%), Query Frame = 0 
Query:    1 MNRQQQLSRGASPEAVFAKRRGEIPYQIYFEV 32
            MNRQQQLSRG SPEAVFAKRRGEIPYQIYFEV
Sbjct:    1 MNRQQQLSRGPSPEAVFAKRRGEIPYQIYFEV 32
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6275.17012.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JFD8_9PHAE4.820e-996.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 62..81
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 103..148
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 44..61
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 82..102
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..43
NoneNo IPR availableTMHMMTMhelixcoord: 41..63
NoneNo IPR availableTMHMMTMhelixcoord: 84..106

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6275contigEcto-sp13_S_contig6275:547..993 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6275.17012.1mRNA_Ecto-sp13_S_contig6275.17012.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig6275 547..1157 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig6275.17012.1 ID=prot_Ecto-sp13_S_contig6275.17012.1|Name=mRNA_Ecto-sp13_S_contig6275.17012.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=149bp
MNRQQQLSRGASPEAVFAKRRGEIPYQIYFEVRYDDSQPRIPSFLLYLPI
SLSLAPLLFAFDARESKSDRSRTRRARERGSIRCCAIYIPFLLLRAFVAN
FASGMLSQPLVVPQAPGQWRGPVPKKFGTAPLRPAVGSGTFCCGRVPL*
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