mRNA_Ecto-sp13_S_contig62741.17010.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig62741.17010.1
Unique NamemRNA_Ecto-sp13_S_contig62741.17010.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig62741.17010.1 vs. uniprot
Match: A0A6H5JAP6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAP6_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 3.840e-17
Identity = 36/37 (97.30%), Postives = 36/37 (97.30%), Query Frame = 1 
Query:   10 MSRLRETAALEGHTERVWCVAWSPDGRLLASCSSDKV 120
            MSRLRETAALEGHTERVWCVAWSPDGRLLASCSSDK 
Sbjct:    1 MSRLRETAALEGHTERVWCVAWSPDGRLLASCSSDKT 37
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BLAST of mRNA_Ecto-sp13_S_contig62741.17010.1 vs. uniprot
Match: D7FXR6_ECTSI (Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXR6_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 7.750e-17
Identity = 36/37 (97.30%), Postives = 36/37 (97.30%), Query Frame = 1 
Query:   10 MSRLRETAALEGHTERVWCVAWSPDGRLLASCSSDKV 120
            MSRLRETAALEGHTERVWCVAWSPDGRLLASCSSDK 
Sbjct:    1 MSRLRETAALEGHTERVWCVAWSPDGRLLASCSSDKT 37
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BLAST of mRNA_Ecto-sp13_S_contig62741.17010.1 vs. uniprot
Match: A0A835YYV2_9STRA (Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYV2_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 2.270e-9
Identity = 26/37 (70.27%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:   10 MSRLRETAALEGHTERVWCVAWSPDGRLLASCSSDKV 120
            M++L   A LEGH ER W VAWSPDG+LLASCSSDK 
Sbjct:    1 MAKLSLLATLEGHEERAWFVAWSPDGKLLASCSSDKT 37
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BLAST of mRNA_Ecto-sp13_S_contig62741.17010.1 vs. uniprot
Match: A0A2V0PR28_9CHLO (Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PR28_9CHLO)

HSP 1 Score: 58.5 bits (140), Expect = 8.260e-9
Identity = 25/40 (62.50%), Postives = 27/40 (67.50%), Query Frame = 1 
Query:    1 LHNMSRLRETAALEGHTERVWCVAWSPDGRLLASCSSDKV 120
            L +   L     LEGH ERVWCVAWSPDG  LASCS+DK 
Sbjct:    3 LESFESLELLQTLEGHDERVWCVAWSPDGSTLASCSADKT 42
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BLAST of mRNA_Ecto-sp13_S_contig62741.17010.1 vs. uniprot
Match: A0A0B7APJ6_9EUPU (Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B7APJ6_9EUPU)

HSP 1 Score: 58.2 bits (139), Expect = 1.080e-8
Identity = 23/37 (62.16%), Postives = 27/37 (72.97%), Query Frame = 1 
Query:   10 MSRLRETAALEGHTERVWCVAWSPDGRLLASCSSDKV 120
            M  L+E   L GHT+RVWCV+WSP+G LLASC  DK 
Sbjct:    1 MQTLKEYQTLNGHTDRVWCVSWSPNGSLLASCGGDKT 37
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BLAST of mRNA_Ecto-sp13_S_contig62741.17010.1 vs. uniprot
Match: A0A5J4YI89_9CHLO (Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4YI89_9CHLO)

HSP 1 Score: 57.4 bits (137), Expect = 1.960e-8
Identity = 24/37 (64.86%), Postives = 28/37 (75.68%), Query Frame = 1 
Query:   10 MSRLRETAALEGHTERVWCVAWSPDGRLLASCSSDKV 120
            M+RL +T  LEGHT+RVW VAWSP G  +ASCS DK 
Sbjct:    1 MARLEQTQVLEGHTDRVWNVAWSPKGDSIASCSGDKT 37
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BLAST of mRNA_Ecto-sp13_S_contig62741.17010.1 vs. uniprot
Match: A0A6P7SB17_OCTVU (Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog n=2 Tax=Octopus TaxID=6643 RepID=A0A6P7SB17_OCTVU)

HSP 1 Score: 57.4 bits (137), Expect = 2.040e-8
Identity = 23/33 (69.70%), Postives = 27/33 (81.82%), Query Frame = 1 
Query:   19 LRETAALEGHTERVWCVAWSPDGRLLASCSSDK 117
            ++ET +L GH E+VWCVAW PDGRLLAS  SDK
Sbjct:    5 MQETTSLSGHEEQVWCVAWDPDGRLLASSGSDK 37
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BLAST of mRNA_Ecto-sp13_S_contig62741.17010.1 vs. uniprot
Match: A0A267FMV6_9PLAT (Uncharacterized protein (Fragment) n=2 Tax=Macrostomum lignano TaxID=282301 RepID=A0A267FMV6_9PLAT)

HSP 1 Score: 57.0 bits (136), Expect = 2.780e-8
Identity = 21/28 (75.00%), Postives = 25/28 (89.29%), Query Frame = 1 
Query:   37 LEGHTERVWCVAWSPDGRLLASCSSDKV 120
            L+GH++RVWCVAWSPDGRLLA+C  DK 
Sbjct:    9 LDGHSDRVWCVAWSPDGRLLATCGGDKT 36
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BLAST of mRNA_Ecto-sp13_S_contig62741.17010.1 vs. uniprot
Match: V3ZFT4_LOTGI (Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog n=1 Tax=Lottia gigantea TaxID=225164 RepID=V3ZFT4_LOTGI)

HSP 1 Score: 57.0 bits (136), Expect = 2.780e-8
Identity = 24/37 (64.86%), Postives = 24/37 (64.86%), Query Frame = 1 
Query:   10 MSRLRETAALEGHTERVWCVAWSPDGRLLASCSSDKV 120
            M RL E     GH E VWCVAWSP G LLASCS DK 
Sbjct:    1 MFRLEEITTFTGHNEAVWCVAWSPSGSLLASCSGDKT 37
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BLAST of mRNA_Ecto-sp13_S_contig62741.17010.1 vs. uniprot
Match: A0A1I8GKD2_9PLAT (Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog n=3 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8GKD2_9PLAT)

HSP 1 Score: 57.0 bits (136), Expect = 2.910e-8
Identity = 21/28 (75.00%), Postives = 25/28 (89.29%), Query Frame = 1 
Query:   37 LEGHTERVWCVAWSPDGRLLASCSSDKV 120
            L+GH++RVWCVAWSPDGRLLA+C  DK 
Sbjct:   11 LDGHSDRVWCVAWSPDGRLLATCGGDKT 38
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig62741.17010.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JAP6_9PHAE3.840e-1797.30Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7FXR6_ECTSI7.750e-1797.30Probable cytosolic iron-sulfur protein assembly pr... [more]
A0A835YYV2_9STRA2.270e-970.27Probable cytosolic iron-sulfur protein assembly pr... [more]
A0A2V0PR28_9CHLO8.260e-962.50Probable cytosolic iron-sulfur protein assembly pr... [more]
A0A0B7APJ6_9EUPU1.080e-862.16Probable cytosolic iron-sulfur protein assembly pr... [more]
A0A5J4YI89_9CHLO1.960e-864.86Probable cytosolic iron-sulfur protein assembly pr... [more]
A0A6P7SB17_OCTVU2.040e-869.70Probable cytosolic iron-sulfur protein assembly pr... [more]
A0A267FMV6_9PLAT2.780e-875.00Uncharacterized protein (Fragment) n=2 Tax=Macrost... [more]
V3ZFT4_LOTGI2.780e-864.86Probable cytosolic iron-sulfur protein assembly pr... [more]
A0A1I8GKD2_9PLAT2.910e-875.00Probable cytosolic iron-sulfur protein assembly pr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig62741contigEcto-sp13_S_contig62741:235..369 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score80.9
Seed ortholog evalue1.6e-13
Seed eggNOG ortholog2880.D7FXR6
Preferred nameCIA1
Model size135
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000166,GO:0002097,GO:0002098,GO:0003674,GO:0003700,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0006139,GO:0006355,GO:0006357,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006790,GO:0006807,GO:0008033,GO:0008144,GO:0008150,GO:0008152,GO:0008284,GO:0009451,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0015630,GO:0016043,GO:0016070,GO:0016226,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0019538,GO:0022607,GO:0030554,GO:0031163,GO:0031323,GO:0031326,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0035639,GO:0036094,GO:0042127,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044572,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051186,GO:0051252,GO:0051604,GO:0060255,GO:0065007,GO:0071704,GO:0071817,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097361,GO:0097367,GO:0097428,GO:0106035,GO:0140110,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1903506,GO:2000112,GO:2001141
Exons1
EggNOG free text desc.iron-sulfur cluster assembly
EggNOG OGsKOG0645@1,KOG0645@2759
Cds size126
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463871.433466-CDS-Ecto-sp13_S_contig62741:234..3601681463871.433466-CDS-Ecto-sp13_S_contig62741:234..360Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig62741 235..360 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463871.445861-UTR-Ecto-sp13_S_contig62741:360..3691681463871.445861-UTR-Ecto-sp13_S_contig62741:360..369Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig62741 361..369 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig62741.17010.1prot_Ecto-sp13_S_contig62741.17010.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig62741 235..360 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig62741.17010.1

>prot_Ecto-sp13_S_contig62741.17010.1 ID=prot_Ecto-sp13_S_contig62741.17010.1|Name=mRNA_Ecto-sp13_S_contig62741.17010.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=42bp
MSRLRETAALEGHTERVWCVAWSPDGRLLASCSSDKVGHAR*
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mRNA from alignment at Ecto-sp13_S_contig62741:235..369-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig62741.17010.1 ID=mRNA_Ecto-sp13_S_contig62741.17010.1|Name=mRNA_Ecto-sp13_S_contig62741.17010.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=135bp|location=Sequence derived from alignment at Ecto-sp13_S_contig62741:235..369- (Ectocarpus species13 EcNAP12_S_4_19m)
TTGCACAACATGTCTCGCCTGCGCGAGACCGCAGCGCTGGAGGGCCACAC
GGAGCGAGTGTGGTGCGTGGCTTGGTCGCCAGACGGGAGACTACTGGCGT
CCTGCAGCAGCGACAAGGTGGGCCATGCGAGATAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig62741:235..369-

>mRNA_Ecto-sp13_S_contig62741.17010.1 ID=mRNA_Ecto-sp13_S_contig62741.17010.1|Name=mRNA_Ecto-sp13_S_contig62741.17010.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=126bp|location=Sequence derived from alignment at Ecto-sp13_S_contig62741:235..369- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCTCGCCTGCGCGAGACCGCAGCGCTGGAGGGCCACACGGAGCGAGT
GTGGTGCGTGGCTTGGTCGCCAGACGGGAGACTACTGGCGTCCTGCAGCA
GCGACAAGGTGGGCCATGCGAGATAG
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