mRNA_Ecto-sp13_S_contig6271.17006.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig6271.17006.1 vs. uniprot
Match: D8LQR2_ECTSI (Lrc5, mitochondrial YqeH-related GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQR2_ECTSI) HSP 1 Score: 132 bits (332), Expect = 2.170e-34 Identity = 66/67 (98.51%), Postives = 67/67 (100.00%), Query Frame = 1
Query: 1 LTSRLNAEELRAAIPKKKVDHVTFRVGEGKVVLVGGLARVEVLTGRPFLLTFFVSNDVRLHPTDARR 201
LTSRLNAEELRAAIPKKKVDHVTFRVGEGKVVLVGGLARVEV+TGRPFLLTFFVSNDVRLHPTDARR
Sbjct: 560 LTSRLNAEELRAAIPKKKVDHVTFRVGEGKVVLVGGLARVEVVTGRPFLLTFFVSNDVRLHPTDARR 626
BLAST of mRNA_Ecto-sp13_S_contig6271.17006.1 vs. uniprot
Match: A0A835YJZ8_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJZ8_9STRA) HSP 1 Score: 95.9 bits (237), Expect = 1.450e-21 Identity = 45/67 (67.16%), Postives = 56/67 (83.58%), Query Frame = 1
Query: 1 LTSRLNAEELRAAIPKKKVDHVTFRVGEGKVVLVGGLARVEVLTGRPFLLTFFVSNDVRLHPTDARR 201
LTSRL EEL++ IP K V+HVT R+ EGK VLVGGLAR+E+++G+PFL TFFVSN+V+LH TDA R
Sbjct: 349 LTSRLTPEELKSVIPAKAVEHVTLRLTEGKAVLVGGLARIELVSGKPFLFTFFVSNEVKLHMTDAAR 415
BLAST of mRNA_Ecto-sp13_S_contig6271.17006.1 vs. uniprot
Match: A0A1E7F2J8_9STRA (G domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F2J8_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 1.630e-19 Identity = 41/69 (59.42%), Postives = 54/69 (78.26%), Query Frame = 1
Query: 1 LTSRLNAEELRAAIPKKKVDHVTFRVGEGKVVLVGGLARVEVL-TGRPFLLTFFVSNDVRLHPTDARRS 204
+T L EELR PKKKV+ +TFRV GK VL+GGLA++EV+ +PFLLTFFV+ND++LHPTD+ R+
Sbjct: 122 ITQLLTPEELRVVCPKKKVEPITFRVASGKCVLIGGLAKIEVIGDSKPFLLTFFVANDIKLHPTDSSRA 190
BLAST of mRNA_Ecto-sp13_S_contig6271.17006.1 vs. uniprot
Match: A0A7S2LG86_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LG86_9STRA) HSP 1 Score: 90.1 bits (222), Expect = 1.720e-19 Identity = 43/69 (62.32%), Postives = 55/69 (79.71%), Query Frame = 1
Query: 1 LTSRLNAEELRAAIPKKKVDHVTFRVGEGKVVLVGGLARVEVLT-GRPFLLTFFVSNDVRLHPTDARRS 204
LTSRL EL+ +PKK V+ V+FRVG GK VL+GGLAR+EV + +PFL TFFVSND++LHPTDA ++
Sbjct: 449 LTSRLTPAELKMVVPKKPVEAVSFRVGPGKCVLIGGLARIEVASDSKPFLFTFFVSNDIKLHPTDASKA 517
BLAST of mRNA_Ecto-sp13_S_contig6271.17006.1 vs. uniprot
Match: A0A7S2LA52_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LA52_9STRA) HSP 1 Score: 89.4 bits (220), Expect = 2.510e-19 Identity = 41/69 (59.42%), Postives = 55/69 (79.71%), Query Frame = 1
Query: 1 LTSRLNAEELRAAIPKKKVDHVTFRVGEGKVVLVGGLARVEVL-TGRPFLLTFFVSNDVRLHPTDARRS 204
LT RL EEL+ +PKK+V+ +TFRV GK VLVGGLA+VE++ +PFL TFFV+ND++LHPTD+ R+
Sbjct: 257 LTERLTPEELKIVVPKKRVEPITFRVASGKCVLVGGLAKVELIGDSKPFLFTFFVANDIKLHPTDSERA 325
BLAST of mRNA_Ecto-sp13_S_contig6271.17006.1 vs. uniprot
Match: A0A7S3YK74_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YK74_HETAK) HSP 1 Score: 84.3 bits (207), Expect = 1.790e-18 Identity = 38/68 (55.88%), Postives = 53/68 (77.94%), Query Frame = 1
Query: 1 LTSRLNAEELRAAIPKKKVDHVTFRVGEGKVVLVGGLARVEVLTGRPFLLTFFVSNDVRLHPTDARRS 204
LT L+ +EL+A +P+ +V+HVT RVGEGK VL+GGLA++++L G+PF TFFVSN V+LH T +S
Sbjct: 47 LTLSLDPKELKAVLPESQVEHVTLRVGEGKSVLMGGLAKLDMLEGKPFFFTFFVSNKVKLHQTSTEKS 114
BLAST of mRNA_Ecto-sp13_S_contig6271.17006.1 vs. uniprot
Match: A0A4D9D9J5_9STRA (G domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D9J5_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 2.100e-18 Identity = 39/68 (57.35%), Postives = 55/68 (80.88%), Query Frame = 1
Query: 1 LTSRLNAEELRAAIPKKKVDHVTFRVGEGKVVLVGGLARVEVLTGRPFLLTFFVSNDVRLHPTDARRS 204
+T+ LN EEL+A IP+K+++HVT R+ EGK VL+GGL R+++L GRPFL TF+VSN+V+LH T R+
Sbjct: 685 ITTLLNTEELKAVIPQKRINHVTLRLKEGKSVLLGGLVRLDMLEGRPFLFTFYVSNEVKLHQTATDRA 752
BLAST of mRNA_Ecto-sp13_S_contig6271.17006.1 vs. uniprot
Match: A0A7S4NA62_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NA62_9STRA) HSP 1 Score: 86.7 bits (213), Expect = 2.860e-18 Identity = 40/69 (57.97%), Postives = 53/69 (76.81%), Query Frame = 1
Query: 1 LTSRLNAEELRAAIPKKKVDHVTFRVGEGKVVLVGGLARVEVL-TGRPFLLTFFVSNDVRLHPTDARRS 204
+T RL EL+ +PKK+V+ VTFRV GK VLVGGLAR+EV +PFL TFFV+ND++LHPTD +++
Sbjct: 490 MTQRLTPAELKIVVPKKEVEPVTFRVASGKCVLVGGLARIEVTGNSKPFLFTFFVANDIKLHPTDVKKA 558
BLAST of mRNA_Ecto-sp13_S_contig6271.17006.1 vs. uniprot
Match: A0A7S2HVG5_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2HVG5_9EUKA) HSP 1 Score: 85.5 bits (210), Expect = 4.150e-18 Identity = 35/67 (52.24%), Postives = 52/67 (77.61%), Query Frame = 1
Query: 1 LTSRLNAEELRAAIPKKKVDHVTFRVGEGKVVLVGGLARVEVLTGRPFLLTFFVSNDVRLHPTDARR 201
LT++L EEL +PKK+ +HVT RV EGK +++GG+ARV + GRPFL TF+++N V++HPTD+ +
Sbjct: 189 LTTKLTTEELALVVPKKRAEHVTLRVSEGKCIMLGGIARVHMRAGRPFLFTFYLANAVKIHPTDSSK 255
BLAST of mRNA_Ecto-sp13_S_contig6271.17006.1 vs. uniprot
Match: A0A7S2E702_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2E702_TRICV) HSP 1 Score: 84.3 bits (207), Expect = 1.370e-17 Identity = 39/69 (56.52%), Postives = 52/69 (75.36%), Query Frame = 1
Query: 1 LTSRLNAEELRAAIPKKKVDHVTFRVGEGKVVLVGGLARVEVL-TGRPFLLTFFVSNDVRLHPTDARRS 204
LT +L EL+ +PKK+V+ +TFRV GK VLVGGLAR+EV+ +PFL TFFV N+++LHPTD R+
Sbjct: 253 LTQKLTPAELKVVVPKKQVEPITFRVASGKCVLVGGLARIEVVGDSKPFLFTFFVGNEIKLHPTDVDRA 321 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6271.17006.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig6271.17006.1 >prot_Ecto-sp13_S_contig6271.17006.1 ID=prot_Ecto-sp13_S_contig6271.17006.1|Name=mRNA_Ecto-sp13_S_contig6271.17006.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=68bp LTSRLNAEELRAAIPKKKVDHVTFRVGEGKVVLVGGLARVEVLTGRPFLLback to top mRNA from alignment at Ecto-sp13_S_contig6271:3..1137+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig6271.17006.1 ID=mRNA_Ecto-sp13_S_contig6271.17006.1|Name=mRNA_Ecto-sp13_S_contig6271.17006.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1135bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6271:3..1137+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6271:3..1137+ >mRNA_Ecto-sp13_S_contig6271.17006.1 ID=mRNA_Ecto-sp13_S_contig6271.17006.1|Name=mRNA_Ecto-sp13_S_contig6271.17006.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=204bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6271:3..1137+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |