mRNA_Ecto-sp13_S_contig6271.17006.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6271.17006.1
Unique NamemRNA_Ecto-sp13_S_contig6271.17006.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig6271.17006.1 vs. uniprot
Match: D8LQR2_ECTSI (Lrc5, mitochondrial YqeH-related GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQR2_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 2.170e-34
Identity = 66/67 (98.51%), Postives = 67/67 (100.00%), Query Frame = 1
Query:    1 LTSRLNAEELRAAIPKKKVDHVTFRVGEGKVVLVGGLARVEVLTGRPFLLTFFVSNDVRLHPTDARR 201
            LTSRLNAEELRAAIPKKKVDHVTFRVGEGKVVLVGGLARVEV+TGRPFLLTFFVSNDVRLHPTDARR
Sbjct:  560 LTSRLNAEELRAAIPKKKVDHVTFRVGEGKVVLVGGLARVEVVTGRPFLLTFFVSNDVRLHPTDARR 626          
BLAST of mRNA_Ecto-sp13_S_contig6271.17006.1 vs. uniprot
Match: A0A835YJZ8_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJZ8_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.450e-21
Identity = 45/67 (67.16%), Postives = 56/67 (83.58%), Query Frame = 1
Query:    1 LTSRLNAEELRAAIPKKKVDHVTFRVGEGKVVLVGGLARVEVLTGRPFLLTFFVSNDVRLHPTDARR 201
            LTSRL  EEL++ IP K V+HVT R+ EGK VLVGGLAR+E+++G+PFL TFFVSN+V+LH TDA R
Sbjct:  349 LTSRLTPEELKSVIPAKAVEHVTLRLTEGKAVLVGGLARIELVSGKPFLFTFFVSNEVKLHMTDAAR 415          
BLAST of mRNA_Ecto-sp13_S_contig6271.17006.1 vs. uniprot
Match: A0A1E7F2J8_9STRA (G domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F2J8_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 1.630e-19
Identity = 41/69 (59.42%), Postives = 54/69 (78.26%), Query Frame = 1
Query:    1 LTSRLNAEELRAAIPKKKVDHVTFRVGEGKVVLVGGLARVEVL-TGRPFLLTFFVSNDVRLHPTDARRS 204
            +T  L  EELR   PKKKV+ +TFRV  GK VL+GGLA++EV+   +PFLLTFFV+ND++LHPTD+ R+
Sbjct:  122 ITQLLTPEELRVVCPKKKVEPITFRVASGKCVLIGGLAKIEVIGDSKPFLLTFFVANDIKLHPTDSSRA 190          
BLAST of mRNA_Ecto-sp13_S_contig6271.17006.1 vs. uniprot
Match: A0A7S2LG86_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LG86_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.720e-19
Identity = 43/69 (62.32%), Postives = 55/69 (79.71%), Query Frame = 1
Query:    1 LTSRLNAEELRAAIPKKKVDHVTFRVGEGKVVLVGGLARVEVLT-GRPFLLTFFVSNDVRLHPTDARRS 204
            LTSRL   EL+  +PKK V+ V+FRVG GK VL+GGLAR+EV +  +PFL TFFVSND++LHPTDA ++
Sbjct:  449 LTSRLTPAELKMVVPKKPVEAVSFRVGPGKCVLIGGLARIEVASDSKPFLFTFFVSNDIKLHPTDASKA 517          
BLAST of mRNA_Ecto-sp13_S_contig6271.17006.1 vs. uniprot
Match: A0A7S2LA52_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LA52_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 2.510e-19
Identity = 41/69 (59.42%), Postives = 55/69 (79.71%), Query Frame = 1
Query:    1 LTSRLNAEELRAAIPKKKVDHVTFRVGEGKVVLVGGLARVEVL-TGRPFLLTFFVSNDVRLHPTDARRS 204
            LT RL  EEL+  +PKK+V+ +TFRV  GK VLVGGLA+VE++   +PFL TFFV+ND++LHPTD+ R+
Sbjct:  257 LTERLTPEELKIVVPKKRVEPITFRVASGKCVLVGGLAKVELIGDSKPFLFTFFVANDIKLHPTDSERA 325          
BLAST of mRNA_Ecto-sp13_S_contig6271.17006.1 vs. uniprot
Match: A0A7S3YK74_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YK74_HETAK)

HSP 1 Score: 84.3 bits (207), Expect = 1.790e-18
Identity = 38/68 (55.88%), Postives = 53/68 (77.94%), Query Frame = 1
Query:    1 LTSRLNAEELRAAIPKKKVDHVTFRVGEGKVVLVGGLARVEVLTGRPFLLTFFVSNDVRLHPTDARRS 204
            LT  L+ +EL+A +P+ +V+HVT RVGEGK VL+GGLA++++L G+PF  TFFVSN V+LH T   +S
Sbjct:   47 LTLSLDPKELKAVLPESQVEHVTLRVGEGKSVLMGGLAKLDMLEGKPFFFTFFVSNKVKLHQTSTEKS 114          
BLAST of mRNA_Ecto-sp13_S_contig6271.17006.1 vs. uniprot
Match: A0A4D9D9J5_9STRA (G domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D9J5_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 2.100e-18
Identity = 39/68 (57.35%), Postives = 55/68 (80.88%), Query Frame = 1
Query:    1 LTSRLNAEELRAAIPKKKVDHVTFRVGEGKVVLVGGLARVEVLTGRPFLLTFFVSNDVRLHPTDARRS 204
            +T+ LN EEL+A IP+K+++HVT R+ EGK VL+GGL R+++L GRPFL TF+VSN+V+LH T   R+
Sbjct:  685 ITTLLNTEELKAVIPQKRINHVTLRLKEGKSVLLGGLVRLDMLEGRPFLFTFYVSNEVKLHQTATDRA 752          
BLAST of mRNA_Ecto-sp13_S_contig6271.17006.1 vs. uniprot
Match: A0A7S4NA62_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NA62_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 2.860e-18
Identity = 40/69 (57.97%), Postives = 53/69 (76.81%), Query Frame = 1
Query:    1 LTSRLNAEELRAAIPKKKVDHVTFRVGEGKVVLVGGLARVEVL-TGRPFLLTFFVSNDVRLHPTDARRS 204
            +T RL   EL+  +PKK+V+ VTFRV  GK VLVGGLAR+EV    +PFL TFFV+ND++LHPTD +++
Sbjct:  490 MTQRLTPAELKIVVPKKEVEPVTFRVASGKCVLVGGLARIEVTGNSKPFLFTFFVANDIKLHPTDVKKA 558          
BLAST of mRNA_Ecto-sp13_S_contig6271.17006.1 vs. uniprot
Match: A0A7S2HVG5_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2HVG5_9EUKA)

HSP 1 Score: 85.5 bits (210), Expect = 4.150e-18
Identity = 35/67 (52.24%), Postives = 52/67 (77.61%), Query Frame = 1
Query:    1 LTSRLNAEELRAAIPKKKVDHVTFRVGEGKVVLVGGLARVEVLTGRPFLLTFFVSNDVRLHPTDARR 201
            LT++L  EEL   +PKK+ +HVT RV EGK +++GG+ARV +  GRPFL TF+++N V++HPTD+ +
Sbjct:  189 LTTKLTTEELALVVPKKRAEHVTLRVSEGKCIMLGGIARVHMRAGRPFLFTFYLANAVKIHPTDSSK 255          
BLAST of mRNA_Ecto-sp13_S_contig6271.17006.1 vs. uniprot
Match: A0A7S2E702_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2E702_TRICV)

HSP 1 Score: 84.3 bits (207), Expect = 1.370e-17
Identity = 39/69 (56.52%), Postives = 52/69 (75.36%), Query Frame = 1
Query:    1 LTSRLNAEELRAAIPKKKVDHVTFRVGEGKVVLVGGLARVEVL-TGRPFLLTFFVSNDVRLHPTDARRS 204
            LT +L   EL+  +PKK+V+ +TFRV  GK VLVGGLAR+EV+   +PFL TFFV N+++LHPTD  R+
Sbjct:  253 LTQKLTPAELKVVVPKKQVEPITFRVASGKCVLVGGLARIEVVGDSKPFLFTFFVGNEIKLHPTDVDRA 321          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6271.17006.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQR2_ECTSI2.170e-3498.51Lrc5, mitochondrial YqeH-related GTPase n=1 Tax=Ec... [more]
A0A835YJZ8_9STRA1.450e-2167.16P-loop containing nucleoside triphosphate hydrolas... [more]
A0A1E7F2J8_9STRA1.630e-1959.42G domain-containing protein n=1 Tax=Fragilariopsis... [more]
A0A7S2LG86_9STRA1.720e-1962.32Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S2LA52_9STRA2.510e-1959.42Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S3YK74_HETAK1.790e-1855.88Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A4D9D9J5_9STRA2.100e-1857.35G domain-containing protein n=2 Tax=Monodopsidacea... [more]
A0A7S4NA62_9STRA2.860e-1857.97Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S2HVG5_9EUKA4.150e-1852.24Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A7S2E702_TRICV1.370e-1756.52Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6271contigEcto-sp13_S_contig6271:3..1137 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score131.3
Seed ortholog evalue1.7e-28
Seed eggNOG ortholog2880.D8LQR2
Model size204
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.GTP binding
EggNOG OGsCOG1161@1,KOG1249@2759
Cds size204
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463871.2440274-CDS-Ecto-sp13_S_contig6271:2..561681463871.2440274-CDS-Ecto-sp13_S_contig6271:2..56Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6271 3..56 +
1681463871.2630448-CDS-Ecto-sp13_S_contig6271:987..11371681463871.2630448-CDS-Ecto-sp13_S_contig6271:987..1137Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6271 988..1137 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6271.17006.1prot_Ecto-sp13_S_contig6271.17006.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6271 3..1137 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6271.17006.1

>prot_Ecto-sp13_S_contig6271.17006.1 ID=prot_Ecto-sp13_S_contig6271.17006.1|Name=mRNA_Ecto-sp13_S_contig6271.17006.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=68bp
LTSRLNAEELRAAIPKKKVDHVTFRVGEGKVVLVGGLARVEVLTGRPFLL
TFFVSNDVRLHPTDARRS
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mRNA from alignment at Ecto-sp13_S_contig6271:3..1137+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6271.17006.1 ID=mRNA_Ecto-sp13_S_contig6271.17006.1|Name=mRNA_Ecto-sp13_S_contig6271.17006.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1135bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6271:3..1137+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCACGTCTCGCCTCAATGCGGAGGAGCTGAGGGCGGCCATCCCCAAGAA GAAGGTGCGTGAGTGACGCCGCACGTGCTACCTAAACCTTAGGCTAACCC GAACCCTAGCCATCCCGAGGAAGAAGGCGCGTGACGCCACACGTGCTACC CAACCTTAGCCCTTACCCTAACCCCATCCCTAACCATCCCTAAGAAGGTG CGCGAGTGATGCCACACGTGCTACCTTAGCCGCTACCATGGCACTCCCCC TCGCCTTTCAATCTTACAGGCTCCTATGGCCCACCGGTTAACCATGTCGT GTGATGTTGATTTATCCTTCCCGCCGAGGTCTTCTTCTCTGCATCGCCCA TATGCATGCATATCGATATTTGTAGAATGTGTGCCAGAGTGGCACGCTCC CCCGCAATCTTGCAGTCTTTCAGGCTGCTCTGCCACGCCGGTATGCCATA GTATGCCATAACGTGTGGTGTTATCGTTAGCACTCTCCCTCCTTACAAGC TGCTCTGGCGCACGGGTTAACCATACCTTGTGCTGCAATCGTAGCACGCT CCCTATAGCCTTGCAGCCTCCCGTGGCACACCGGCAAACCATGTTTTCGG TGTCGTCAGCCGTCGCCGCCGCCCTACAAAGGACGATTTCTCGTGGAGAG CCAGCAAAAGTGGACAGTCGGTCAACAGTTTTCCGAGGACAGCGGCCGCA GGCGGAATCTCGCGACCACCGCAACCACAACAAACCGTTTTATAGCAGCA ACGAATGGTACAGCAGTGAGGGGGCGTCACTAGCGGCGGTTGATTTGCGC CGGTGGCCCTGAAAAAAGCGCCGGTCGATGCGCTGGGCAAAGACTGATGT CACCAACACCTTAGTTCTGTACTCTACTTAGCGCCGGTCGATACGCTGGG CACGTACGTACAGTATGCCTTGTTCGTCATGCTTTTTTTGCCCGCTCTCG CGCGCGCGGTGTGTGTGTGTGTTTCGAGACTGCAGGTAGACCACGTGACC TTCCGGGTAGGGGAGGGCAAGGTGGTGCTGGTGGGCGGCCTCGCGAGGGT GGAGGTGTTGACCGGCCGACCGTTCCTGCTCACCTTCTTCGTGTCGAACG ACGTTCGCCTTCACCCGACTGACGCGAGGAGGTCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6271:3..1137+

>mRNA_Ecto-sp13_S_contig6271.17006.1 ID=mRNA_Ecto-sp13_S_contig6271.17006.1|Name=mRNA_Ecto-sp13_S_contig6271.17006.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=204bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6271:3..1137+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCACGTCTCGCCTCAATGCGGAGGAGCTGAGGGCGGCCATCCCCAAGAA
GAAGGTAGACCACGTGACCTTCCGGGTAGGGGAGGGCAAGGTGGTGCTGG
TGGGCGGCCTCGCGAGGGTGGAGGTGTTGACCGGCCGACCGTTCCTGCTC
ACCTTCTTCGTGTCGAACGACGTTCGCCTTCACCCGACTGACGCGAGGAG
GTCC
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