mRNA_Ecto-sp13_S_contig627.17004.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig627.17004.1
Unique NamemRNA_Ecto-sp13_S_contig627.17004.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig627.17004.1 vs. uniprot
Match: D8LAW1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAW1_ECTSI)

HSP 1 Score: 587 bits (1512), Expect = 1.410e-201
Identity = 326/373 (87.40%), Postives = 332/373 (89.01%), Query Frame = 1 
Query: 1384 MSSLDRFPRGWLFSEEGIREREATPGPEAYDVGLENRLEGCSFEKMYGSLETLASWGRLGASRAGEGGCSNDEVAADGKVRESENTKKRTSPAECRSKSGNGGVEEEGYAKDRQSAAELAEQNYFRRSHAPCVAGQSTLSLPAKLETNSVRRSSNGRRQHCSRLSPASSVAACRDVPCPDCASIEVATAAGTFAAASASLSDANLFRRAKTIGASVRFGDMPRLRSAPAFTIGRGQRDVSSRLLHTTPAEALYKEDRLGRSGNGPTTASPRAGERLTRPRPIAARVVLPKQAPRASAGGGSEGGKSAAPAXXAAGGEGVMEVAERGVIVVDGALGTQVKSCRPSSPSFTLAGPRRAATLFHERLRYDGKVSEV 2502
            MSSLDRFPRG LFSEE IREREATPGPEAYDVGLENRLEGCSFEKMYGSLETLASWG LGASRAG G CSND+VAADG V ESENT K T+     SKSGNGGVEEEGYAKDRQS AELAE+N  RRSHAPCVAGQSTLS PAKLETNS RRSSNGRRQHCSRLSPASSVAACR VPCPDCAS+EVATAAGTFAAASASLSDANLFRRA+TIGASVRFGDMPRLRSAPAFTIGRGQRDVSSRLLHTTPAEALYKEDRLGRSG GPTTASPRAGERLTRPRPIAARVVLPKQ PRASAGGGSE        XX       MEVAERGVIVVDGALGTQVKS RP+SPSFTLAGPRRAATLFHERLRYDGK   V
Sbjct:    1 MSSLDRFPRGRLFSEEEIREREATPGPEAYDVGLENRLEGCSFEKMYGSLETLASWGSLGASRAGGGVCSNDKVAADGIVHESENTNKGTNI----SKSGNGGVEEEGYAKDRQSVAELAERNSSRRSHAPCVAGQSTLSSPAKLETNSARRSSNGRRQHCSRLSPASSVAACRGVPCPDCASVEVATAAGTFAAASASLSDANLFRRARTIGASVRFGDMPRLRSAPAFTIGRGQRDVSSRLLHTTPAEALYKEDRLGRSGKGPTTASPRAGERLTRPRPIAARVVLPKQGPRASAGGGSEXXXXXXXXXXXX----XMEVAERGVIVVDGALGTQVKSRRPTSPSFTLAGPRRAATLFHERLRYDGKALSV 365
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig627.17004.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LAW1_ECTSI1.410e-20187.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig627contigEcto-sp13_S_contig627:20164..22964 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2526
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-27_006220.1
Cds size2385
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463871.0512433-UTR-Ecto-sp13_S_contig627:20163..203041681463871.0512433-UTR-Ecto-sp13_S_contig627:20163..20304Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig627 20164..20304 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463871.0608087-CDS-Ecto-sp13_S_contig627:20304..210271681463871.0608087-CDS-Ecto-sp13_S_contig627:20304..21027Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig627 20305..21027 +
1681463871.0697114-CDS-Ecto-sp13_S_contig627:21302..229641681463871.0697114-CDS-Ecto-sp13_S_contig627:21302..22964Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig627 21303..22964 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig627.17004.1prot_Ecto-sp13_S_contig627.17004.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig627 20305..22964 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig627.17004.1

>prot_Ecto-sp13_S_contig627.17004.1 ID=prot_Ecto-sp13_S_contig627.17004.1|Name=mRNA_Ecto-sp13_S_contig627.17004.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=795bp
MPHSSSEETQDIPEQQPHGSTSAEAQKNHTVILPAKVPGPGPGDYNVTPP
AIGQNGHAVRFGYPGLGRKYPPRTPDQPRAEIPCTYAEPAHVSSLHNQLT
SDRATSYAVFFGGVPRFQKKRSVSNQAKDLLHFADTKPAGRRSPMVATAS
GFTTSTASPSGPGPGDYDVAHHAVGQNGPAITFGDPALGGKRYPPRTQDQ
PRAEVPCTYAEPGHISCLRHQLTSDRPTSPAVFFGGAPRFQQERRKRSEA
RIDATSQRKPAGQTRAKSSSALRPGNALPQPISTTDSRRRKKRRKRRWGG
PRIFRRGNYGWLTSCAEPRQWEPQLKLLEDKDKGSGGNPATPISDVSRTW
SLTEKNAPRPVLRRGERYNQSEYNPQHRDLPREKDGYPGPKYDRPPGAFG
RTGGGGGTVAPSASMSSLDRFPRGWLFSEEGIREREATPGPEAYDVGLEN
RLEGCSFEKMYGSLETLASWGRLGASRAGEGGCSNDEVAADGKVRESENT
KKRTSPAECRSKSGNGGVEEEGYAKDRQSAAELAEQNYFRRSHAPCVAGQ
STLSLPAKLETNSVRRSSNGRRQHCSRLSPASSVAACRDVPCPDCASIEV
ATAAGTFAAASASLSDANLFRRAKTIGASVRFGDMPRLRSAPAFTIGRGQ
RDVSSRLLHTTPAEALYKEDRLGRSGNGPTTASPRAGERLTRPRPIAARV
VLPKQAPRASAGGGSEGGKSAAPAAPAAGGEGVMEVAERGVIVVDGALGT
QVKSCRPSSPSFTLAGPRRAATLFHERLRYDGKVSEVHSFFSGG*
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mRNA from alignment at Ecto-sp13_S_contig627:20164..22964+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig627.17004.1 ID=mRNA_Ecto-sp13_S_contig627.17004.1|Name=mRNA_Ecto-sp13_S_contig627.17004.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2801bp|location=Sequence derived from alignment at Ecto-sp13_S_contig627:20164..22964+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGCAGTAAGTACCATGGACAGATGAAGCAGGCAAGTTGGGAACTACAAT
GCAGCAAAACGCGGCGAGTGTTTGGTTCATTGGCGCGAGTATAGTAAACC
ACGAGCAACAGCGACCGACCTGGGCGTAACAACACGTGCGAATGCCTCAT
TCTTCTTCCGAAGAAACACAGGACATCCCCGAACAACAGCCACACGGAAG
CACCAGCGCGGAGGCGCAGAAAAATCATACCGTTATACTGCCGGCAAAGG
TCCCGGGGCCCGGGCCTGGGGACTACAATGTCACGCCTCCTGCAATTGGG
CAGAATGGCCACGCGGTTAGGTTCGGTTACCCCGGACTAGGGAGAAAGTA
CCCACCGAGAACCCCGGATCAACCGCGAGCAGAGATCCCGTGCACCTACG
CCGAGCCAGCGCACGTTTCAAGCCTCCACAACCAGTTGACCTCTGATCGG
GCCACGTCTTACGCGGTGTTCTTCGGTGGGGTACCTCGTTTCCAGAAGAA
GCGGTCAGTTTCAAATCAAGCCAAAGATTTGCTTCACTTTGCTGATACCA
AGCCGGCCGGACGGCGAAGCCCAATGGTGGCCACCGCCAGCGGTTTTACT
ACTTCAACTGCGAGCCCGAGCGGACCCGGTCCCGGGGACTACGATGTCGC
ACATCATGCAGTCGGGCAGAACGGCCCCGCGATCACGTTCGGCGACCCTG
CCCTGGGAGGGAAAAGGTACCCGCCGAGGACCCAGGACCAACCGCGAGCA
GAAGTCCCGTGCACCTACGCCGAGCCTGGGCATATCTCTTGCCTGCGCCA
CCAATTGACCTCGGATCGACCCACGTCTCCGGCGGTCTTCTTTGGCGGAG
CACCTCGTTTCCAGGTGCGGTGCGGTGAACACCTTTCGAAAATCTCGCCA
GAAATTTGAACAACTGGGCTTGAGCGAATGAGGCGGTGCGCCCAAAAGTC
AGACGTCGATATGATGACCCATAGACAGTAGGAAACGCGGAACAGCGAAC
TTTGCATAGCTTGCAAACGGTGCGCGTAAAGGGTTGATGTTGCTCAGGAC
CGTCGGTATCCGCCCATCACAAATGACAACAGATGCAGCAGCTACAAGTA
ATTAAAATCAATCGACGAGTGGTGCCCTATGTGTCGAAGCAGGAACGTCG
GAAGAGGTCGGAGGCGAGGATTGATGCTACCTCACAACGAAAGCCAGCAG
GCCAGACGAGGGCTAAGTCGTCTTCTGCTCTGCGCCCGGGTAATGCTCTT
CCTCAACCCATCTCCACCACCGATTCGCGTCGACGAAAGAAGCGAAGAAA
GCGGCGGTGGGGAGGCCCGAGAATATTTCGTCGTGGAAACTACGGCTGGC
TGACGTCGTGCGCAGAGCCGAGACAGTGGGAACCGCAACTCAAACTCCTC
GAAGACAAAGACAAGGGCAGCGGCGGCAACCCGGCAACACCCATCTCAGA
CGTCTCGAGAACATGGTCGCTGACGGAAAAGAACGCCCCACGCCCAGTGC
TCAGGCGCGGCGAGCGCTACAATCAGTCGGAGTACAACCCGCAGCACCGC
GATCTGCCGCGAGAGAAGGACGGGTACCCTGGTCCGAAGTACGATCGCCC
CCCCGGAGCGTTTGGAAGGACGGGCGGCGGTGGCGGAACGGTCGCCCCGA
GCGCCTCTATGTCTTCGCTGGATCGCTTCCCCCGCGGATGGCTCTTTTCT
GAGGAGGGAATACGAGAAAGGGAAGCCACTCCAGGCCCAGAAGCGTACGA
CGTTGGGCTGGAAAACCGCTTGGAAGGGTGTTCTTTTGAAAAAATGTACG
GGTCATTGGAGACGCTCGCGTCTTGGGGTCGTCTGGGGGCTAGCAGAGCA
GGGGAGGGGGGATGCAGTAACGACGAGGTTGCTGCCGACGGTAAAGTACG
CGAGAGCGAGAATACTAAAAAGCGAACGAGTCCTGCCGAGTGCCGGAGTA
AAAGCGGCAACGGGGGAGTGGAGGAGGAAGGATACGCCAAAGACCGGCAA
TCAGCAGCGGAGCTGGCCGAACAAAATTATTTTCGTCGTTCTCACGCGCC
CTGTGTGGCTGGGCAGTCGACGTTGTCCTTGCCAGCGAAATTGGAGACCA
ACAGCGTTCGCCGCAGTAGCAACGGGCGGCGGCAGCACTGTTCTCGACTG
TCACCGGCGTCGTCGGTAGCGGCTTGTCGCGACGTGCCGTGTCCGGACTG
TGCGAGCATCGAGGTAGCCACCGCCGCGGGCACCTTCGCCGCCGCGTCCG
CCTCCCTGTCAGACGCGAACCTGTTCCGACGGGCGAAGACGATCGGCGCA
AGCGTCCGCTTCGGCGACATGCCCCGCCTCCGCAGCGCCCCGGCCTTCAC
GATCGGCAGGGGCCAGAGGGACGTCTCTTCGCGGCTCCTGCACACCACAC
CAGCGGAAGCACTTTACAAGGAGGACCGTCTGGGGCGGAGCGGGAACGGT
CCAACGACGGCCTCTCCCCGGGCGGGAGAACGCCTCACCAGACCCCGGCC
GATTGCGGCGAGAGTCGTCCTCCCAAAACAGGCTCCACGTGCTTCCGCGG
GGGGGGGCTCGGAGGGAGGAAAGTCGGCGGCGCCGGCGGCGCCGGCGGCG
GGGGGAGAAGGAGTGATGGAGGTTGCCGAGAGAGGGGTGATCGTGGTTGA
TGGGGCTCTTGGAACACAGGTAAAGTCCTGCCGACCCAGCAGCCCTAGCT
TCACCCTGGCGGGGCCGCGGCGTGCGGCGACCCTGTTCCACGAGCGGCTT
CGGTACGATGGAAAGGTGAGCGAAGTGCATAGTTTTTTTTCCGGGGGATA
A
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig627:20164..22964+

>mRNA_Ecto-sp13_S_contig627.17004.1 ID=mRNA_Ecto-sp13_S_contig627.17004.1|Name=mRNA_Ecto-sp13_S_contig627.17004.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2385bp|location=Sequence derived from alignment at Ecto-sp13_S_contig627:20164..22964+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCTCATTCTTCTTCCGAAGAAACACAGGACATCCCCGAACAACAGCC
ACACGGAAGCACCAGCGCGGAGGCGCAGAAAAATCATACCGTTATACTGC
CGGCAAAGGTCCCGGGGCCCGGGCCTGGGGACTACAATGTCACGCCTCCT
GCAATTGGGCAGAATGGCCACGCGGTTAGGTTCGGTTACCCCGGACTAGG
GAGAAAGTACCCACCGAGAACCCCGGATCAACCGCGAGCAGAGATCCCGT
GCACCTACGCCGAGCCAGCGCACGTTTCAAGCCTCCACAACCAGTTGACC
TCTGATCGGGCCACGTCTTACGCGGTGTTCTTCGGTGGGGTACCTCGTTT
CCAGAAGAAGCGGTCAGTTTCAAATCAAGCCAAAGATTTGCTTCACTTTG
CTGATACCAAGCCGGCCGGACGGCGAAGCCCAATGGTGGCCACCGCCAGC
GGTTTTACTACTTCAACTGCGAGCCCGAGCGGACCCGGTCCCGGGGACTA
CGATGTCGCACATCATGCAGTCGGGCAGAACGGCCCCGCGATCACGTTCG
GCGACCCTGCCCTGGGAGGGAAAAGGTACCCGCCGAGGACCCAGGACCAA
CCGCGAGCAGAAGTCCCGTGCACCTACGCCGAGCCTGGGCATATCTCTTG
CCTGCGCCACCAATTGACCTCGGATCGACCCACGTCTCCGGCGGTCTTCT
TTGGCGGAGCACCTCGTTTCCAGCAGGAACGTCGGAAGAGGTCGGAGGCG
AGGATTGATGCTACCTCACAACGAAAGCCAGCAGGCCAGACGAGGGCTAA
GTCGTCTTCTGCTCTGCGCCCGGGTAATGCTCTTCCTCAACCCATCTCCA
CCACCGATTCGCGTCGACGAAAGAAGCGAAGAAAGCGGCGGTGGGGAGGC
CCGAGAATATTTCGTCGTGGAAACTACGGCTGGCTGACGTCGTGCGCAGA
GCCGAGACAGTGGGAACCGCAACTCAAACTCCTCGAAGACAAAGACAAGG
GCAGCGGCGGCAACCCGGCAACACCCATCTCAGACGTCTCGAGAACATGG
TCGCTGACGGAAAAGAACGCCCCACGCCCAGTGCTCAGGCGCGGCGAGCG
CTACAATCAGTCGGAGTACAACCCGCAGCACCGCGATCTGCCGCGAGAGA
AGGACGGGTACCCTGGTCCGAAGTACGATCGCCCCCCCGGAGCGTTTGGA
AGGACGGGCGGCGGTGGCGGAACGGTCGCCCCGAGCGCCTCTATGTCTTC
GCTGGATCGCTTCCCCCGCGGATGGCTCTTTTCTGAGGAGGGAATACGAG
AAAGGGAAGCCACTCCAGGCCCAGAAGCGTACGACGTTGGGCTGGAAAAC
CGCTTGGAAGGGTGTTCTTTTGAAAAAATGTACGGGTCATTGGAGACGCT
CGCGTCTTGGGGTCGTCTGGGGGCTAGCAGAGCAGGGGAGGGGGGATGCA
GTAACGACGAGGTTGCTGCCGACGGTAAAGTACGCGAGAGCGAGAATACT
AAAAAGCGAACGAGTCCTGCCGAGTGCCGGAGTAAAAGCGGCAACGGGGG
AGTGGAGGAGGAAGGATACGCCAAAGACCGGCAATCAGCAGCGGAGCTGG
CCGAACAAAATTATTTTCGTCGTTCTCACGCGCCCTGTGTGGCTGGGCAG
TCGACGTTGTCCTTGCCAGCGAAATTGGAGACCAACAGCGTTCGCCGCAG
TAGCAACGGGCGGCGGCAGCACTGTTCTCGACTGTCACCGGCGTCGTCGG
TAGCGGCTTGTCGCGACGTGCCGTGTCCGGACTGTGCGAGCATCGAGGTA
GCCACCGCCGCGGGCACCTTCGCCGCCGCGTCCGCCTCCCTGTCAGACGC
GAACCTGTTCCGACGGGCGAAGACGATCGGCGCAAGCGTCCGCTTCGGCG
ACATGCCCCGCCTCCGCAGCGCCCCGGCCTTCACGATCGGCAGGGGCCAG
AGGGACGTCTCTTCGCGGCTCCTGCACACCACACCAGCGGAAGCACTTTA
CAAGGAGGACCGTCTGGGGCGGAGCGGGAACGGTCCAACGACGGCCTCTC
CCCGGGCGGGAGAACGCCTCACCAGACCCCGGCCGATTGCGGCGAGAGTC
GTCCTCCCAAAACAGGCTCCACGTGCTTCCGCGGGGGGGGGCTCGGAGGG
AGGAAAGTCGGCGGCGCCGGCGGCGCCGGCGGCGGGGGGAGAAGGAGTGA
TGGAGGTTGCCGAGAGAGGGGTGATCGTGGTTGATGGGGCTCTTGGAACA
CAGGTAAAGTCCTGCCGACCCAGCAGCCCTAGCTTCACCCTGGCGGGGCC
GCGGCGTGCGGCGACCCTGTTCCACGAGCGGCTTCGGTACGATGGAAAGG
TGAGCGAAGTGCATAGTTTTTTTTCCGGGGGATAA
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