mRNA_Ecto-sp13_S_contig62610.16990.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig62610.16990.1
Unique NamemRNA_Ecto-sp13_S_contig62610.16990.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig62610.16990.1 vs. uniprot
Match: D7FSU4_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSU4_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 7.880e-42
Identity = 80/94 (85.11%), Postives = 81/94 (86.17%), Query Frame = 1
Query:    1 TALMIASHRGYSLIVRMLLSKGAQVSIADVHGDTALHLSVLAGHMAVTKMLVEAGAPLEVATTSKHQLCTPLHLAADNGCIASIIPLLEAGANP 282
            TALMIASHRGYSLIVRMLLSKGAQVSIADVHGD+ LHLSVLAGHMAVTK LVEAGAPLEVAT  K  LCTPLHLAADNGCI SI   LEA   P
Sbjct:   51 TALMIASHRGYSLIVRMLLSKGAQVSIADVHGDSGLHLSVLAGHMAVTKTLVEAGAPLEVAT--KQLLCTPLHLAADNGCIESITTSLEADVPP 142          
BLAST of mRNA_Ecto-sp13_S_contig62610.16990.1 vs. uniprot
Match: D7FXY7_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXY7_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 4.030e-21
Identity = 52/71 (73.24%), Postives = 54/71 (76.06%), Query Frame = 1
Query:  148 MLVEAGAPLEVATTSKHQLCTPLHLAADNGCIASIIPLLEAGANPNCRTEKGATPLFSVAWIGNVAAVRLL 360
            MLVEAGAPLEVAT  K QLCTPL +AA NGC AS+  LLEAGAN N R   GATPLF  AW GNV AVRLL
Sbjct:    1 MLVEAGAPLEVAT--KQQLCTPLQIAAVNGCAASMTTLLEAGANLNSRRFDGATPLFLAAWEGNVDAVRLL 69          
BLAST of mRNA_Ecto-sp13_S_contig62610.16990.1 vs. uniprot
Match: A0A6H5JL58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL58_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 5.350e-19
Identity = 55/120 (45.83%), Postives = 73/120 (60.83%), Query Frame = 1
Query:    1 TALMIASHRGYSLIVRMLLSKGAQVSIADVHGDTALHLSVLAGHMAVTKMLVEAGAPLEVATTSKHQLCTPLHLAADNGCIASIIPLLEAGANPNCRTEKGATPLFSVAWIGNVAAVRLL 360
            T LM A   GY  +VR+LL  GA+VS+AD  G TALHLS++  H+AV+K LV+AGA +E          TPLH+AA  G    ++ L+ AGAN +   E  ATPL+  A  G +  VR+L
Sbjct:   41 TPLMAAFTMGYLRVVRVLLRLGARVSVADNDGATALHLSIVNKHLAVSKALVKAGAGVEARGVDG----TPLHVAAAKGFHKGMVMLIHAGANVDSEQEGRATPLYISARQGRLEDVRIL 156          
BLAST of mRNA_Ecto-sp13_S_contig62610.16990.1 vs. uniprot
Match: A0A6H5JNS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNS0_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 1.270e-15
Identity = 57/129 (44.19%), Postives = 72/129 (55.81%), Query Frame = 1
Query:   13 IASHRGYSLIVRMLLSKGAQVSIADVHGDTALHLSVLAGHMAVTKMLVEAGAPLEVATTSKHQL----CTPLHLAADNGCIASIIPLLEAG--------ANPNCRTEKGAT-PLFSVAWIGNVAAVRLL 360
            +AS  GY  +VR+LL  GA+VS AD  G TALHLS++  H+AV+K LV+AGA LE A    HQ     CTPLH+AA  G    ++ L+ AG        ANP      G + PL   A  G +  VR L
Sbjct:   37 VASTMGYLRVVRVLLRLGARVSAADNDGATALHLSIVNKHLAVSKALVKAGADLE-ARIDHHQALGVGCTPLHVAAAKGFHKGMVMLIHAGVKGFVGAKANPILAAYDGESLPLDVAAENGQLGVVREL 164          
BLAST of mRNA_Ecto-sp13_S_contig62610.16990.1 vs. uniprot
Match: D7G449_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G449_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 2.230e-14
Identity = 44/91 (48.35%), Postives = 58/91 (63.74%), Query Frame = 1
Query:    1 TALMIASHRGYSLIVRMLLSKGAQVSIADVHGDTALHLSVLAGHMAVTKMLVEAGAPLEVATTSKHQLCTPLHLAADNGCIASIIPLLEAG 273
            T LM AS  GY  +VR+LL  GA+VS+AD  G TALHLS++  H+AV+K LV+AGA +E          TPLH+AA  G    ++ L+ AG
Sbjct:   41 TPLMAASTMGYLRVVRVLLRLGARVSVADNDGATALHLSIVNKHLAVSKALVKAGAGVEARGVDG----TPLHVAAAKGFHKGMVMLIHAG 127          
BLAST of mRNA_Ecto-sp13_S_contig62610.16990.1 vs. uniprot
Match: D7G2C8_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2C8_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 3.460e-13
Identity = 42/92 (45.65%), Postives = 57/92 (61.96%), Query Frame = 1
Query:    1 TALMIASHRGYSLIVRMLLSKGAQVSIADVHGDTALHLSVLAGHMAVTKMLVEAGAPLEVATTSKHQLCTPLHLAADNGCIASIIPLLEAGA 276
            T LM AS  GY  +VR+LL  GA+VS+AD  G TALHLS++  H+AV++ LV+AGA +E          TPLH+AA  G    ++ L+   A
Sbjct:   41 TPLMAASTMGYLRVVRVLLRPGARVSVADNDGATALHLSIVIKHLAVSRALVKAGAGVEARGVDG----TPLHVAAAKGFHKGMVMLIHVDA 128          
BLAST of mRNA_Ecto-sp13_S_contig62610.16990.1 vs. uniprot
Match: A0A6H5JMS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMS6_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 1.050e-12
Identity = 38/57 (66.67%), Postives = 43/57 (75.44%), Query Frame = 1
Query:  148 MLVEAGAPLEVATTSKHQLCTPLHLAADNGCIASIIPLLEAGANPNCRTEKGATPLF 318
            ML+EAGAPLEVAT  K QLCTPLH+AA NGC AS   +L+AGANPN R   GA+  F
Sbjct:    1 MLMEAGAPLEVAT--KQQLCTPLHVAAVNGCAASTRTMLKAGANPNSRRFDGASRYF 55          
BLAST of mRNA_Ecto-sp13_S_contig62610.16990.1 vs. uniprot
Match: A0A840BEN8_9RHOO (Uncharacterized protein n=1 Tax=Niveibacterium umoris TaxID=1193620 RepID=A0A840BEN8_9RHOO)

HSP 1 Score: 68.9 bits (167), Expect = 7.880e-12
Identity = 41/109 (37.61%), Postives = 59/109 (54.13%), Query Frame = 1
Query:    1 TALMIASHRGYSLIVRMLLSKGAQVSIADVHGDTALHLSVLAGHMAVTKMLVEAGAPLEVATTSKHQLCTPLHLAADNGCIASIIPLLEAGANPNCRTEKGATPLFSVA 327
            T L+ A+  G + IV  LL +GA+  +   HG+TA+ L+ + GH+   +  + A APLEV         +PLH A+  G  A +  LLEAGA  + R + GAT L   A
Sbjct:   59 TLLIQAAREGQTAIVTYLLERGARPEVRSRHGETAISLAAMNGHLETVEAFIAAHAPLEVRNA-----WSPLHYASYMGHEAIVRRLLEAGAVTDARADNGATALMLAA 162          
BLAST of mRNA_Ecto-sp13_S_contig62610.16990.1 vs. uniprot
Match: D7FT11_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT11_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 9.780e-12
Identity = 46/121 (38.02%), Postives = 60/121 (49.59%), Query Frame = 1
Query:    1 TALMIASHRGYSLIVRMLLSKGAQVSIADVHGDTALHLSVLAGHM-AVTKMLVEAGAPLEVATTSKHQLCTPLHLAADNGCIASIIPLLEAGANPNCRTEKGATPLFSVAWIGNVAAVRLL 360
            T LM+A H G+S I +ML+ KGA VSIAD  G TALH         A+ K+L +AGA L+     +     PLH A  +              NP+C+   G+T L   A  G VA +R L
Sbjct:  141 TPLMMAVHNGHSRIAKMLIKKGANVSIADKRGFTALHFCCAREEDDAIVKLLAKAGADLDAIIPGEGS--APLHRATHHEXXXXXXXXXXXXXNPDCQLPDGSTALHIAAEEGQVAVMREL 259          
BLAST of mRNA_Ecto-sp13_S_contig62610.16990.1 vs. uniprot
Match: A0A6H5JWZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWZ8_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 5.040e-11
Identity = 45/87 (51.72%), Postives = 53/87 (60.92%), Query Frame = 1
Query:   10 MIASHRGYSLIVRMLLSKGAQVSIADVHGDTALHLSVLAGHMAVTKMLVEAGAPLEVATTSKHQLCTPLHLAADNGCIASIIPLLEA 270
            M+AS RG++LIVR+LL +GA V I    G TAL      G +AV KMLV AGA LE AT+S      P HLAAD G  A I  L +A
Sbjct:    1 MVASQRGFTLIVRILLKEGANVLIVADLGFTALLACAQYGKLAVCKMLVNAGAELEAATSSNGS--RPRHLAADIGHAAVIKALRQA 85          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig62610.16990.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSU4_ECTSI7.880e-4285.11EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7FXY7_ECTSI4.030e-2173.24EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JL58_9PHAE5.350e-1945.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNS0_9PHAE1.270e-1544.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G449_ECTSI2.230e-1448.35EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7G2C8_ECTSI3.460e-1345.65EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JMS6_9PHAE1.050e-1266.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A840BEN8_9RHOO7.880e-1237.61Uncharacterized protein n=1 Tax=Niveibacterium umo... [more]
D7FT11_ECTSI9.780e-1238.02EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JWZ8_9PHAE5.040e-1151.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig62610contigEcto-sp13_S_contig62610:420..779 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score144.4
Seed ortholog evalue3.3e-32
Seed eggNOG ortholog2880.D7FSU4
Model size360
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Cds size351
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463869.9991114-CDS-Ecto-sp13_S_contig62610:419..7701681463869.9991114-CDS-Ecto-sp13_S_contig62610:419..770Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig62610 420..770 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463870.0115745-UTR-Ecto-sp13_S_contig62610:770..7791681463870.0115745-UTR-Ecto-sp13_S_contig62610:770..779Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig62610 771..779 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig62610.16990.1prot_Ecto-sp13_S_contig62610.16990.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig62610 420..770 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig62610.16990.1

>prot_Ecto-sp13_S_contig62610.16990.1 ID=prot_Ecto-sp13_S_contig62610.16990.1|Name=mRNA_Ecto-sp13_S_contig62610.16990.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=117bp
MIASHRGYSLIVRMLLSKGAQVSIADVHGDTALHLSVLAGHMAVTKMLVE
AGAPLEVATTSKHQLCTPLHLAADNGCIASIIPLLEAGANPNCRTEKGAT
PLFSVAWIGNVAAVRLL
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mRNA from alignment at Ecto-sp13_S_contig62610:420..779-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig62610.16990.1 ID=mRNA_Ecto-sp13_S_contig62610.16990.1|Name=mRNA_Ecto-sp13_S_contig62610.16990.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=360bp|location=Sequence derived from alignment at Ecto-sp13_S_contig62610:420..779- (Ectocarpus species13 EcNAP12_S_4_19m)
ACCGCTCTCATGATAGCCTCCCACCGGGGTTACTCCCTCATTGTCAGGAT GCTTCTGAGTAAGGGAGCACAGGTCTCGATAGCGGATGTTCACGGCGATA CTGCCTTGCACCTGTCCGTTTTGGCAGGACACATGGCCGTGACCAAGATG CTGGTGGAGGCCGGCGCACCCCTCGAGGTTGCCACTACAAGTAAACACCA GCTTTGCACTCCGCTTCACTTGGCCGCTGACAACGGGTGCATCGCGTCGA TAATACCGTTGCTCGAGGCAGGTGCGAATCCCAACTGCCGTACGGAGAAG GGGGCAACACCGCTGTTCTCTGTGGCTTGGATAGGGAACGTGGCTGCGGT AAGGTTGCTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig62610:420..779-

>mRNA_Ecto-sp13_S_contig62610.16990.1 ID=mRNA_Ecto-sp13_S_contig62610.16990.1|Name=mRNA_Ecto-sp13_S_contig62610.16990.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=351bp|location=Sequence derived from alignment at Ecto-sp13_S_contig62610:420..779- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATAGCCTCCCACCGGGGTTACTCCCTCATTGTCAGGATGCTTCTGAG
TAAGGGAGCACAGGTCTCGATAGCGGATGTTCACGGCGATACTGCCTTGC
ACCTGTCCGTTTTGGCAGGACACATGGCCGTGACCAAGATGCTGGTGGAG
GCCGGCGCACCCCTCGAGGTTGCCACTACAAGTAAACACCAGCTTTGCAC
TCCGCTTCACTTGGCCGCTGACAACGGGTGCATCGCGTCGATAATACCGT
TGCTCGAGGCAGGTGCGAATCCCAACTGCCGTACGGAGAAGGGGGCAACA
CCGCTGTTCTCTGTGGCTTGGATAGGGAACGTGGCTGCGGTAAGGTTGCT
A
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