mRNA_Ecto-sp13_S_contig6247.16978.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6247.16978.1
Unique NamemRNA_Ecto-sp13_S_contig6247.16978.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6247.16978.1 vs. uniprot
Match: A0A6H5KBR7_9PHAE (GT14 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBR7_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 7.490e-38
Identity = 64/65 (98.46%), Postives = 64/65 (98.46%), Query Frame = 1 
Query:    1 MQTLGRIQRAYPQRFRLYKGEFWGAFHRSFCEYASWSPDNVARTLSAYFTGYRISDESYFQTRAC 195
            MQTLGRIQRAYPQRFRLYKGEFWGAFHRSFCEYASWSPDNVARTLSAYFTGYRISDESYFQT AC
Sbjct:  254 MQTLGRIQRAYPQRFRLYKGEFWGAFHRSFCEYASWSPDNVARTLSAYFTGYRISDESYFQTLAC 318
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BLAST of mRNA_Ecto-sp13_S_contig6247.16978.1 vs. uniprot
Match: D8LDZ1_ECTSI (Xylosyltransferase, family GT14 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDZ1_ECTSI)

HSP 1 Score: 139 bits (350), Expect = 1.590e-37
Identity = 64/65 (98.46%), Postives = 64/65 (98.46%), Query Frame = 1 
Query:    1 MQTLGRIQRAYPQRFRLYKGEFWGAFHRSFCEYASWSPDNVARTLSAYFTGYRISDESYFQTRAC 195
            MQTLGRIQRAYPQRFRLYKGEFWGAFHRSFCEYASWSPDNVARTLSAYFTGYRISDESYFQT AC
Sbjct:  314 MQTLGRIQRAYPQRFRLYKGEFWGAFHRSFCEYASWSPDNVARTLSAYFTGYRISDESYFQTLAC 378
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BLAST of mRNA_Ecto-sp13_S_contig6247.16978.1 vs. uniprot
Match: A0A6H5L1U8_9PHAE (GT14 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L1U8_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 4.320e-18
Identity = 38/60 (63.33%), Postives = 44/60 (73.33%), Query Frame = 1 
Query:   16 RIQRAYPQRFRLYKGEFWGAFHRSFCEYASWSPDNVARTLSAYFTGYRISDESYFQTRAC 195
            R++R  P  F L+KGEFW A HR FCEY   SPDNVAR+L AYF  +RISDES+FQT  C
Sbjct:  297 RVERPLPNLFTLFKGEFWVALHRDFCEYVHESPDNVARSLQAYFAKFRISDESFFQTTLC 356
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BLAST of mRNA_Ecto-sp13_S_contig6247.16978.1 vs. uniprot
Match: A0A6H5L6Q9_9PHAE (Protein xylosyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L6Q9_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 1.750e-15
Identity = 35/51 (68.63%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:   43 FRLYKGEFWGAFHRSFCEYASWSPDNVARTLSAYFTGYRISDESYFQTRAC 195
            F +YKGEFW   HRSFC+Y   SPDNVAR+L AYF+ +RISDESYFQT  C
Sbjct:  346 FTVYKGEFWVILHRSFCKYLEASPDNVARSLQAYFSKFRISDESYFQTVLC 396
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6247.16978.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KBR7_9PHAE7.490e-3898.46GT14 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D8LDZ1_ECTSI1.590e-3798.46Xylosyltransferase, family GT14 n=1 Tax=Ectocarpus... [more]
A0A6H5L1U8_9PHAE4.320e-1863.33GT14 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A... [more]
A0A6H5L6Q9_9PHAE1.750e-1568.63Protein xylosyltransferase n=2 Tax=Ectocarpus TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6247contigEcto-sp13_S_contig6247:8122..8316 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score138.3
Seed ortholog evalue1.3e-30
Seed eggNOG ortholog2880.D8LDZ1
Preferred nameXYLT2
Model size195
KEGG koko:K00771
KEGG ReactionR05925
KEGG Pathwayko00532,ko00534,ko01100,map00532,map00534,map01100
KEGG ModuleM00057
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000139,GO:0002009,GO:0002119,GO:0002164,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005975,GO:0005996,GO:0006022,GO:0006023,GO:0006024,GO:0006029,GO:0006082,GO:0006139,GO:0006725,GO:0006790,GO:0006793,GO:0006807,GO:0006950,GO:0007275,GO:0007399,GO:0007610,GO:0008150,GO:0008152,GO:0008194,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009266,GO:0009408,GO:0009628,GO:0009653,GO:0009791,GO:0009888,GO:0009987,GO:0010033,GO:0010721,GO:0010975,GO:0010977,GO:0012505,GO:0015012,GO:0016020,GO:0016021,GO:0016740,GO:0016757,GO:0016763,GO:0018991,GO:0019098,GO:0019321,GO:0019538,GO:0022008,GO:0022414,GO:0030154,GO:0030158,GO:0030166,GO:0030201,GO:0030202,GO:0030203,GO:0030204,GO:0030206,GO:0030210,GO:0031090,GO:0031224,GO:0031344,GO:0031345,GO:0031984,GO:0032101,GO:0032102,GO:0032501,GO:0032502,GO:0032504,GO:0033319,GO:0033554,GO:0034097,GO:0034605,GO:0034641,GO:0034645,GO:0035252,GO:0040025,GO:0042221,GO:0042285,GO:0042732,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044272,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0046483,GO:0048513,GO:0048519,GO:0048523,GO:0048569,GO:0048583,GO:0048585,GO:0048609,GO:0048679,GO:0048681,GO:0048699,GO:0048729,GO:0048731,GO:0048856,GO:0048869,GO:0050650,GO:0050654,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051128,GO:0051129,GO:0051239,GO:0051241,GO:0051716,GO:0051960,GO:0051961,GO:0055086,GO:0060284,GO:0060429,GO:0065007,GO:0070555,GO:0070570,GO:0070571,GO:0071704,GO:0080134,GO:0080135,GO:0098588,GO:0098791,GO:0120035,GO:0140096,GO:1901135,GO:1901137,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1903034,GO:1903035,GO:1903510,GO:2000026
Exons1
EggNOG free text desc.acetylglucosaminyltransferase activity
EggNOG OGsKOG0799@1,KOG0799@2759
EC2.4.2.26
Cds size195
COG Functional cat.O
CAZyGT14
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463869.1112683-CDS-Ecto-sp13_S_contig6247:8121..83161681463869.1112683-CDS-Ecto-sp13_S_contig6247:8121..8316Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6247 8122..8316 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6247.16978.1prot_Ecto-sp13_S_contig6247.16978.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6247 8122..8316 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6247.16978.1

>prot_Ecto-sp13_S_contig6247.16978.1 ID=prot_Ecto-sp13_S_contig6247.16978.1|Name=mRNA_Ecto-sp13_S_contig6247.16978.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=65bp
MQTLGRIQRAYPQRFRLYKGEFWGAFHRSFCEYASWSPDNVARTLSAYFT
GYRISDESYFQTRAC
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mRNA from alignment at Ecto-sp13_S_contig6247:8122..8316-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6247.16978.1 ID=mRNA_Ecto-sp13_S_contig6247.16978.1|Name=mRNA_Ecto-sp13_S_contig6247.16978.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=195bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6247:8122..8316- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGACGCTCGGGCGGATACAGCGGGCGTACCCGCAGCGGTTTCGGCT
GTACAAGGGGGAGTTCTGGGGAGCGTTCCACCGATCGTTCTGCGAGTACG
CGTCGTGGTCCCCGGACAACGTGGCGAGGACCCTGTCGGCGTACTTCACG
GGGTACCGCATCTCAGACGAGAGCTACTTCCAGACCCGGGCGTGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6247:8122..8316-

>mRNA_Ecto-sp13_S_contig6247.16978.1 ID=mRNA_Ecto-sp13_S_contig6247.16978.1|Name=mRNA_Ecto-sp13_S_contig6247.16978.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=195bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6247:8122..8316- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGACGCTCGGGCGGATACAGCGGGCGTACCCGCAGCGGTTTCGGCT
GTACAAGGGGGAGTTCTGGGGAGCGTTCCACCGATCGTTCTGCGAGTACG
CGTCGTGGTCCCCGGACAACGTGGCGAGGACCCTGTCGGCGTACTTCACG
GGGTACCGCATCTCAGACGAGAGCTACTTCCAGACCCGGGCGTGC
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