mRNA_Ecto-sp13_S_contig62425.16970.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig62425.16970.1
Unique NamemRNA_Ecto-sp13_S_contig62425.16970.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig62425.16970.1 vs. uniprot
Match: A0A7S2BFW1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BFW1_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 2.540e-6
Identity = 21/32 (65.62%), Postives = 28/32 (87.50%), Query Frame = 1 
Query:    1 GLRPNVVCYGAAVDACAKGGQWERAVGLLREM 96
            G++PNV+ + AA+DACAKGGQWE+A+ LL EM
Sbjct:    4 GVKPNVISFNAAIDACAKGGQWEKALSLLDEM 35
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BLAST of mRNA_Ecto-sp13_S_contig62425.16970.1 vs. uniprot
Match: A0A7S2FHK7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FHK7_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 7.570e-6
Identity = 21/32 (65.62%), Postives = 28/32 (87.50%), Query Frame = 1 
Query:    1 GLRPNVVCYGAAVDACAKGGQWERAVGLLREM 96
            G++PNV+ + AA+DACAKGGQWE+A+ LL EM
Sbjct:    4 GVKPNVISFNAAIDACAKGGQWEKALSLLDEM 35
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BLAST of mRNA_Ecto-sp13_S_contig62425.16970.1 vs. uniprot
Match: A0A7S1Z7G9_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z7G9_TRICV)

HSP 1 Score: 49.7 bits (117), Expect = 4.220e-5
Identity = 18/32 (56.25%), Postives = 27/32 (84.38%), Query Frame = 1 
Query:    1 GLRPNVVCYGAAVDACAKGGQWERAVGLLREM 96
            G++P+VVC+ AA+ AC + G+WE A+G+LREM
Sbjct:    4 GIKPDVVCFNAAIGACERAGRWEEALGILREM 35
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig62425.16970.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7S2BFW1_9STRA2.540e-665.63Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2FHK7_9STRA7.570e-665.63Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S1Z7G9_TRICV4.220e-556.25Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig62425contigEcto-sp13_S_contig62425:1..789 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size324
Hectar predicted targeting categoryother localisation
Exons2
Cds size324
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463868.5028236-CDS-Ecto-sp13_S_contig62425:0..1221681463868.5028236-CDS-Ecto-sp13_S_contig62425:0..122Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig62425 1..122 +
1681463868.5140991-CDS-Ecto-sp13_S_contig62425:587..7891681463868.5140991-CDS-Ecto-sp13_S_contig62425:587..789Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig62425 588..789 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig62425.16970.1prot_Ecto-sp13_S_contig62425.16970.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig62425 1..789 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig62425.16970.1

>prot_Ecto-sp13_S_contig62425.16970.1 ID=prot_Ecto-sp13_S_contig62425.16970.1|Name=mRNA_Ecto-sp13_S_contig62425.16970.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=108bp
GLRPNVVCYGAAVDACAKGGQWERAVGLLREMGYAGVEPDRICYNAAINA
CAQSGEWETALSLADEMRRSVPVLGTGAGPDVFTFNSIMHGMASAGECER
LLVLLAEM
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mRNA from alignment at Ecto-sp13_S_contig62425:1..789+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig62425.16970.1 ID=mRNA_Ecto-sp13_S_contig62425.16970.1|Name=mRNA_Ecto-sp13_S_contig62425.16970.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=789bp|location=Sequence derived from alignment at Ecto-sp13_S_contig62425:1..789+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTCTGCGGCCGAACGTCGTGTGCTACGGCGCCGCCGTCGACGCTTGCGC
TAAGGGAGGGCAGTGGGAGAGGGCGGTGGGGCTCCTCCGTGAGATGGGAT
ACGCTGGGGTTGAGCCTGACAGGTGATGATGATGCGGGGGGGGGGATCGA
TGATGCCATGAAGAGGAGATACGCTAGATCGTTTTTCCGGCAGCGTGAAA
GAACCACGAAGCAACACGGATGGGAAGGGGGGTGTACTCGTTTCTGAAAA
ACATGTTGTCCTTCAAGTGGGGAGGTATCCTCAAGATACCACCTGTTCAG
CGCAGCTGGGAAGTGAGACCACCTGAATAACACGGCGATACGCGCGTAGT
TCTTTTCTGATGTACGACTGCGTACCATCTCTCGCGCCCCTTCGGTATGT
GGGGCGGCGTGACCAATGTTCTACCAAGAACAAAAACGCCGTCTTCTTGT
TGTTTGGCAGGACCTGCTATTTACAACGCGACGATAAACGTGTCTCTCTC
GAACCCCTTCCGCTTGAACCTGCGAGGTCTCGAGCGGCTTGACCGATATT
CTCCCGCATTTGTTTTCGTTCTTCTTTCCTTCCGCAGAATCTGCTACAAC
GCGGCGATCAACGCGTGCGCCCAGAGCGGCGAGTGGGAGACGGCCTTGTC
CCTCGCGGACGAGATGCGCCGCTCGGTACCGGTCCTCGGAACGGGCGCCG
GTCCCGACGTCTTCACTTTCAACTCTATCATGCACGGCATGGCGAGCGCG
GGGGAGTGCGAACGGCTACTGGTGTTGCTGGCCGAGATG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig62425:1..789+

>mRNA_Ecto-sp13_S_contig62425.16970.1 ID=mRNA_Ecto-sp13_S_contig62425.16970.1|Name=mRNA_Ecto-sp13_S_contig62425.16970.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=324bp|location=Sequence derived from alignment at Ecto-sp13_S_contig62425:1..789+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTCTGCGGCCGAACGTCGTGTGCTACGGCGCCGCCGTCGACGCTTGCGC
TAAGGGAGGGCAGTGGGAGAGGGCGGTGGGGCTCCTCCGTGAGATGGGAT
ACGCTGGGGTTGAGCCTGACAGAATCTGCTACAACGCGGCGATCAACGCG
TGCGCCCAGAGCGGCGAGTGGGAGACGGCCTTGTCCCTCGCGGACGAGAT
GCGCCGCTCGGTACCGGTCCTCGGAACGGGCGCCGGTCCCGACGTCTTCA
CTTTCAACTCTATCATGCACGGCATGGCGAGCGCGGGGGAGTGCGAACGG
CTACTGGTGTTGCTGGCCGAGATG
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