prot_Ecto-sp13_S_contig62425.16970.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig62425.16970.1
Unique Nameprot_Ecto-sp13_S_contig62425.16970.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length108
Homology
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BLAST of mRNA_Ecto-sp13_S_contig62425.16970.1 vs. uniprot
Match: A0A7S2BFW1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BFW1_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 2.540e-6
Identity = 21/32 (65.62%), Postives = 28/32 (87.50%), Query Frame = 0 
Query:    1 GLRPNVVCYGAAVDACAKGGQWERAVGLLREM 32
            G++PNV+ + AA+DACAKGGQWE+A+ LL EM
Sbjct:    4 GVKPNVISFNAAIDACAKGGQWEKALSLLDEM 35
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BLAST of mRNA_Ecto-sp13_S_contig62425.16970.1 vs. uniprot
Match: A0A7S2FHK7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FHK7_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 7.570e-6
Identity = 21/32 (65.62%), Postives = 28/32 (87.50%), Query Frame = 0 
Query:    1 GLRPNVVCYGAAVDACAKGGQWERAVGLLREM 32
            G++PNV+ + AA+DACAKGGQWE+A+ LL EM
Sbjct:    4 GVKPNVISFNAAIDACAKGGQWEKALSLLDEM 35
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BLAST of mRNA_Ecto-sp13_S_contig62425.16970.1 vs. uniprot
Match: A0A7S1Z7G9_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z7G9_TRICV)

HSP 1 Score: 49.7 bits (117), Expect = 4.220e-5
Identity = 18/32 (56.25%), Postives = 27/32 (84.38%), Query Frame = 0 
Query:    1 GLRPNVVCYGAAVDACAKGGQWERAVGLLREM 32
            G++P+VVC+ AA+ AC + G+WE A+G+LREM
Sbjct:    4 GIKPDVVCFNAAIGACERAGRWEEALGILREM 35
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig62425.16970.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7S2BFW1_9STRA2.540e-665.63Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2FHK7_9STRA7.570e-665.63Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S1Z7G9_TRICV4.220e-556.25Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 98..108
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 2..108
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..108
e-value: 1.8E-28
score: 102.0
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 4..52
e-value: 3.1E-9
score: 36.9
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 83..108
e-value: 0.07
score: 13.4
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 7..40
e-value: 3.2E-5
score: 21.8
coord: 42..70
e-value: 1.7E-6
score: 25.8
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 5..39
score: 10.972
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 40..70
score: 9.964
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 81..108
score: 8.528

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig62425contigEcto-sp13_S_contig62425:1..789 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig62425.16970.1mRNA_Ecto-sp13_S_contig62425.16970.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig62425 1..789 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig62425.16970.1 ID=prot_Ecto-sp13_S_contig62425.16970.1|Name=mRNA_Ecto-sp13_S_contig62425.16970.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=108bp
GLRPNVVCYGAAVDACAKGGQWERAVGLLREMGYAGVEPDRICYNAAINA
CAQSGEWETALSLADEMRRSVPVLGTGAGPDVFTFNSIMHGMASAGECER
LLVLLAEM
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat