mRNA_Ecto-sp13_S_contig6241.16969.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6241.16969.1
Unique NamemRNA_Ecto-sp13_S_contig6241.16969.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6241.16969.1 vs. uniprot
Match: D7G9I6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9I6_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 2.720e-31
Identity = 86/98 (87.76%), Postives = 89/98 (90.82%), Query Frame = 3 
Query:   30 MFGSPPAGARQGMNPPXXXXXXXXXXXXXXXXXXXXXXXXXDGGTATGTSSAQEFMQQQRGHQRQHGNAEDVEELSFDEPAMAPVNPGPLPTRLGTGF 323
            MFGSPPAGARQG++PPXXXXXXXXXXXXXXXXXXXX     DG TATG SSAQEFMQQQRGHQRQHGNAE+ EELSFDEPAMAPVN GPLPTRLGTGF
Sbjct:    1 MFGSPPAGARQGVSPPXXXXXXXXXXXXXXXXXXXXQEQRKDGDTATGRSSAQEFMQQQRGHQRQHGNAENGEELSFDEPAMAPVNSGPLPTRLGTGF 98
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6241.16969.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G9I6_ECTSI2.720e-3187.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6241contigEcto-sp13_S_contig6241:6941..7624 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size323
Hectar predicted targeting categoryother localisation
Exons2
Cds size294
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463868.4393067-UTR-Ecto-sp13_S_contig6241:6940..69691681463868.4393067-UTR-Ecto-sp13_S_contig6241:6940..6969Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6241 6941..6969 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463868.4485872-CDS-Ecto-sp13_S_contig6241:6969..71791681463868.4485872-CDS-Ecto-sp13_S_contig6241:6969..7179Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6241 6970..7179 +
1681463868.4584415-CDS-Ecto-sp13_S_contig6241:7540..76241681463868.4584415-CDS-Ecto-sp13_S_contig6241:7540..7624Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6241 7541..7624 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6241.16969.1prot_Ecto-sp13_S_contig6241.16969.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6241 6970..7624 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6241.16969.1

>prot_Ecto-sp13_S_contig6241.16969.1 ID=prot_Ecto-sp13_S_contig6241.16969.1|Name=mRNA_Ecto-sp13_S_contig6241.16969.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=98bp
MFGSPPAGARQGMNPPPSPPPPPPPRFRFRAGAAGQQEQRQDGGTATGTS
SAQEFMQQQRGHQRQHGNAEDVEELSFDEPAMAPVNPGPLPTRLGTGF
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mRNA from alignment at Ecto-sp13_S_contig6241:6941..7624+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6241.16969.1 ID=mRNA_Ecto-sp13_S_contig6241.16969.1|Name=mRNA_Ecto-sp13_S_contig6241.16969.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=684bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6241:6941..7624+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCTTCTTCCCCGCCTCCGTTTGTGTTCATGTTCGGGTCGCCGCCGGCT
GGAGCACGGCAGGGCATGAACCCCCCCCCCTCGCCGCCGCCGCCGCCACC
GCCAAGGTTCAGGTTCAGGGCCGGTGCGGCGGGCCAGCAGGAACAAAGGC
AGGACGGGGGCACCGCTACGGGCACGAGCTCCGCGCAGGAGTTCATGCAG
CAGCAGCGCGGACACCAACGCCAGCACGGAAACGCGGAGGCAAGCAAGGC
TTGGAATTATTCGAGCTGTATTTTGTTGTTTTCTTTCTTCCGGAGGCTTA
TCTTCTTTATAGACTTGTTAGGGGCCAGAATGACCTAATCGGTTATCCAA
GATGCCGCCGTTTATTGTAACAGTCGTGGAACTGCCTTTTGCTGGTCGCA
GGCTGTGGAACCTGCTGCAAGAGACGCTCATCAGCTTCCGAGCAGCTGTC
GACCTGTTGACGCGAAAAATATCTACCAACACCTTTTTTTTTCTTCAATT
GACAAGTACCTGCGTGTGACAGATGATATTTTCCTCCATAACCCCCCCCG
CCGCCGGCCATGTTCTTGATACTACGTGTGTTCTACTGCTGTTGCAATAG
GATGTCGAGGAATTGAGCTTTGACGAGCCGGCGATGGCACCGGTAAACCC
GGGGCCGCTTCCCACTCGTCTGGGAACGGGTTTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6241:6941..7624+

>mRNA_Ecto-sp13_S_contig6241.16969.1 ID=mRNA_Ecto-sp13_S_contig6241.16969.1|Name=mRNA_Ecto-sp13_S_contig6241.16969.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=294bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6241:6941..7624+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCGGGTCGCCGCCGGCTGGAGCACGGCAGGGCATGAACCCCCCCCC
CTCGCCGCCGCCGCCGCCACCGCCAAGGTTCAGGTTCAGGGCCGGTGCGG
CGGGCCAGCAGGAACAAAGGCAGGACGGGGGCACCGCTACGGGCACGAGC
TCCGCGCAGGAGTTCATGCAGCAGCAGCGCGGACACCAACGCCAGCACGG
AAACGCGGAGGATGTCGAGGAATTGAGCTTTGACGAGCCGGCGATGGCAC
CGGTAAACCCGGGGCCGCTTCCCACTCGTCTGGGAACGGGTTTT
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