prot_Ecto-sp13_S_contig11988.1693.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig11988.1693.1
Unique Nameprot_Ecto-sp13_S_contig11988.1693.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length70
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig11988.1693.1 vs. uniprot
Match: Q8QNK0_ESV1K (EsV-1-73 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNK0_ESV1K)

HSP 1 Score: 113 bits (283), Expect = 1.630e-31
Identity = 56/69 (81.16%), Postives = 59/69 (85.51%), Query Frame = 0 
Query:    1 MTATRVIKKTVTVRRCHVCKARLKIHEGKLCSCSILLCMRHRYKADHFCLDGKVVDLMDKIEPRKVEKI 69
            MT  RV KKT   RRCHVCKARLKIHEGKLCSCS+LLCM+HRYKADHFC  GKVV  MDKIEPRK+EKI
Sbjct:   15 MTVIRVSKKTA--RRCHVCKARLKIHEGKLCSCSMLLCMKHRYKADHFCPAGKVVHPMDKIEPRKIEKI 81
[Close]
BLAST of mRNA_Ecto-sp13_S_contig11988.1693.1 vs. uniprot
Match: D8LPA5_ECTSI (EsV-1-73 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPA5_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 6.650e-31
Identity = 55/69 (79.71%), Postives = 60/69 (86.96%), Query Frame = 0 
Query:    1 MTATRVIKKTVTVRRCHVCKARLKIHEGKLCSCSILLCMRHRYKADHFCLDGKVVDLMDKIEPRKVEKI 69
            MTA +V KKTV   RCHVCKARLKIHEGKLCSCS+LLCM+HRYKADHFC  GKVV  MDK+EPRKVE+I
Sbjct:   15 MTAIQVTKKTVP--RCHVCKARLKIHEGKLCSCSMLLCMKHRYKADHFCPAGKVVHQMDKVEPRKVEQI 81
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11988.1693.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Q8QNK0_ESV1K1.630e-3181.16EsV-1-73 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
D8LPA5_ECTSI6.650e-3179.71EsV-1-73 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR035896AN1-like Zinc fingerGENE3D4.10.1110.10coord: 1..64
e-value: 5.8E-8
score: 34.5
IPR035896AN1-like Zinc fingerSUPERFAMILY118310AN1-like Zinc fingercoord: 6..49
IPR000058Zinc finger, AN1-typePROSITEPS51039ZF_AN1coord: 13..61
score: 9.442

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11988contigEcto-sp13_S_contig11988:3260..3469 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11988.1693.1mRNA_Ecto-sp13_S_contig11988.1693.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig11988 3239..3469 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig11988.1693.1 ID=prot_Ecto-sp13_S_contig11988.1693.1|Name=mRNA_Ecto-sp13_S_contig11988.1693.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=70bp
MTATRVIKKTVTVRRCHVCKARLKIHEGKLCSCSILLCMRHRYKADHFCL
DGKVVDLMDKIEPRKVEKI*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR035896AN1-like_Znf
IPR000058Znf_AN1