mRNA_Ecto-sp13_S_contig11988.1693.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11988.1693.1
Unique NamemRNA_Ecto-sp13_S_contig11988.1693.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11988.1693.1 vs. uniprot
Match: Q8QNK0_ESV1K (EsV-1-73 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNK0_ESV1K)

HSP 1 Score: 114 bits (284), Expect = 1.540e-31
Identity = 57/71 (80.28%), Postives = 61/71 (85.92%), Query Frame = 1 
Query:   16 ARMTATRVIKKTVTVRRCHVCKARLKIHEGKLCSCSILLCMRHRYKADHFCLDGKVVDLMDKIEPRKVEKI 228
            +RMT  RV KKT   RRCHVCKARLKIHEGKLCSCS+LLCM+HRYKADHFC  GKVV  MDKIEPRK+EKI
Sbjct:   13 SRMTVIRVSKKTA--RRCHVCKARLKIHEGKLCSCSMLLCMKHRYKADHFCPAGKVVHPMDKIEPRKIEKI 81
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BLAST of mRNA_Ecto-sp13_S_contig11988.1693.1 vs. uniprot
Match: D8LPA5_ECTSI (EsV-1-73 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPA5_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 6.260e-31
Identity = 56/71 (78.87%), Postives = 62/71 (87.32%), Query Frame = 1 
Query:   16 ARMTATRVIKKTVTVRRCHVCKARLKIHEGKLCSCSILLCMRHRYKADHFCLDGKVVDLMDKIEPRKVEKI 228
            +RMTA +V KKTV   RCHVCKARLKIHEGKLCSCS+LLCM+HRYKADHFC  GKVV  MDK+EPRKVE+I
Sbjct:   13 SRMTAIQVTKKTVP--RCHVCKARLKIHEGKLCSCSMLLCMKHRYKADHFCPAGKVVHQMDKVEPRKVEQI 81
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11988.1693.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Q8QNK0_ESV1K1.540e-3180.28EsV-1-73 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
D8LPA5_ECTSI6.260e-3178.87EsV-1-73 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11988contigEcto-sp13_S_contig11988:3239..3469 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size231
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionEsV-1-73 zinc finger, AN1-type
Ec32 orthologEc-06_006070.1
Cds size210
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462635.469378-UTR-Ecto-sp13_S_contig11988:3238..32591681462635.469378-UTR-Ecto-sp13_S_contig11988:3238..3259Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11988 3239..3259 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462635.479248-CDS-Ecto-sp13_S_contig11988:3259..34691681462635.479248-CDS-Ecto-sp13_S_contig11988:3259..3469Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11988 3260..3469 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11988.1693.1prot_Ecto-sp13_S_contig11988.1693.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11988 3260..3469 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11988.1693.1

>prot_Ecto-sp13_S_contig11988.1693.1 ID=prot_Ecto-sp13_S_contig11988.1693.1|Name=mRNA_Ecto-sp13_S_contig11988.1693.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=70bp
MTATRVIKKTVTVRRCHVCKARLKIHEGKLCSCSILLCMRHRYKADHFCL
DGKVVDLMDKIEPRKVEKI*
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mRNA from alignment at Ecto-sp13_S_contig11988:3239..3469+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11988.1693.1 ID=mRNA_Ecto-sp13_S_contig11988.1693.1|Name=mRNA_Ecto-sp13_S_contig11988.1693.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=231bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11988:3239..3469+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACAACTCGTTCATCAGCGCGAATGACGGCAACCCGAGTCATCAAGAAAAC
AGTGACGGTGAGGAGATGTCACGTCTGCAAGGCGAGGCTCAAGATACACG
AAGGAAAACTTTGTTCGTGTTCCATACTGCTTTGTATGAGGCACCGATAC
AAGGCCGACCATTTCTGTCTGGACGGGAAAGTTGTAGACCTCATGGATAA
AATCGAGCCGCGAAAGGTGGAAAAGATATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11988:3239..3469+

>mRNA_Ecto-sp13_S_contig11988.1693.1 ID=mRNA_Ecto-sp13_S_contig11988.1693.1|Name=mRNA_Ecto-sp13_S_contig11988.1693.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=210bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11988:3239..3469+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGGCAACCCGAGTCATCAAGAAAACAGTGACGGTGAGGAGATGTCA
CGTCTGCAAGGCGAGGCTCAAGATACACGAAGGAAAACTTTGTTCGTGTT
CCATACTGCTTTGTATGAGGCACCGATACAAGGCCGACCATTTCTGTCTG
GACGGGAAAGTTGTAGACCTCATGGATAAAATCGAGCCGCGAAAGGTGGA
AAAGATATGA
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