mRNA_Ecto-sp13_S_contig62129.16934.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig62129.16934.1
Unique NamemRNA_Ecto-sp13_S_contig62129.16934.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig62129.16934.1 vs. uniprot
Match: A0A6H5KYR0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYR0_9PHAE)

HSP 1 Score: 214 bits (546), Expect = 3.470e-63
Identity = 100/102 (98.04%), Postives = 100/102 (98.04%), Query Frame = 1
Query:    1 SFAVDGDTGRLSFQLPELSVAASFRYRQPWSEERPNSAGPEGWLQRTGLLPLHYFVHSMGSEAGYSLKATGAPRAVVGRGSIHMEANYGESFPTGWVWAQVC 306
            SFAVDGDTGRLSFQLPELSVAASFRYRQ WSEERPNSAGPEGWLQRTGLLPLHYFVHSMGSEAGYSLKATGAPRAVVGRGSIHMEANYGESFPTGWVWAQ C
Sbjct:  579 SFAVDGDTGRLSFQLPELSVAASFRYRQAWSEERPNSAGPEGWLQRTGLLPLHYFVHSMGSEAGYSLKATGAPRAVVGRGSIHMEANYGESFPTGWVWAQGC 680          
BLAST of mRNA_Ecto-sp13_S_contig62129.16934.1 vs. uniprot
Match: D8LQ64_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ64_ECTSI)

HSP 1 Score: 212 bits (540), Expect = 3.480e-63
Identity = 99/102 (97.06%), Postives = 99/102 (97.06%), Query Frame = 1
Query:    1 SFAVDGDTGRLSFQLPELSVAASFRYRQPWSEERPNSAGPEGWLQRTGLLPLHYFVHSMGSEAGYSLKATGAPRAVVGRGSIHMEANYGESFPTGWVWAQVC 306
            SFAVDGD GRLSFQLPELSVAASFRYRQPWSEERPNSAGPEGWLQRTGLLPLHYFV SMGSEAGYSLKATGAPRAVVGRGSIHMEANYGESFPTGWVWAQ C
Sbjct:  409 SFAVDGDKGRLSFQLPELSVAASFRYRQPWSEERPNSAGPEGWLQRTGLLPLHYFVQSMGSEAGYSLKATGAPRAVVGRGSIHMEANYGESFPTGWVWAQGC 510          
BLAST of mRNA_Ecto-sp13_S_contig62129.16934.1 vs. uniprot
Match: A0A835Z7D9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7D9_9STRA)

HSP 1 Score: 121 bits (304), Expect = 6.380e-31
Identity = 56/102 (54.90%), Postives = 62/102 (60.78%), Query Frame = 1
Query:   10 VDGDTGRLSFQLPELSVAASFRYRQPWSEERPNSAGPEGWLQRTGLLPLHYFVHSMGSEAGYSLKAT-GAPRAVVGRGSIHMEANYGESFPTGWVWAQVCGR 312
            V  ++G L F +PE SV A F  R PWS  RPN  GPEGWL  TGLLPLHYFVHS GS A Y  +A         G G +HME NYG+ FP  WVW Q C R
Sbjct:  122 VQPESGTLEFSVPEASVKAKFHGRIPWSRSRPNKDGPEGWLAGTGLLPLHYFVHSFGSAAEYEFEAKHDKAEKCSGSGRLHMECNYGDMFPHAWVWGQGCSR 223          
BLAST of mRNA_Ecto-sp13_S_contig62129.16934.1 vs. uniprot
Match: A0A7S0QBM1_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0QBM1_9EUKA)

HSP 1 Score: 107 bits (266), Expect = 1.130e-27
Identity = 49/99 (49.49%), Postives = 63/99 (63.64%), Query Frame = 1
Query:   10 VDGDTGRLSFQLPELSVAASFRY-RQPWSEERPNSAGPEGWLQRTGLLPLHYFVHSMGSEAGYSLKATGAPRAVVGRGSIHMEANYGESFPTGWVWAQV 303
            VDGD   +  ++  L +AA+    R PWS+  P+ AGPEGWL RT LLP HYF+HS  S   Y L+      ++ GRG+ H+E NYG +FPTGWVWAQ 
Sbjct:   32 VDGDAAIIDVRVGPLRLAANLSSPRLPWSDAAPDRAGPEGWLGRTNLLPCHYFIHSFASPTSYHLER--GRSSLTGRGTSHLERNYGANFPTGWVWAQA 128          
BLAST of mRNA_Ecto-sp13_S_contig62129.16934.1 vs. uniprot
Match: A0A812TWY2_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812TWY2_9DINO)

HSP 1 Score: 89.4 bits (220), Expect = 1.270e-18
Identity = 48/111 (43.24%), Postives = 59/111 (53.15%), Query Frame = 1
Query:    4 FAVDGDTGRLS---------FQLPE-LSVAASFRYRQPWSEERPNSAGPEGWLQR--TGLLPLHYFVHSMGSEAGYSLKATGAPRAVVGRGSIHMEANYGESFPTGWVWAQ 300
            F V+ + GRL+         F  P  L + AS   R PW E   ++ GPEGW  R  +GLLP HYFVHS+GS A YS+        + G G  H EANYG  FP+ W W Q
Sbjct:  109 FVVESEVGRLAVNDSKAELLFNFPSGLRIEASLANRIPWDEACRDTCGPEGWAGRLPSGLLPTHYFVHSLGSTAVYSVNG------LRGSGFAHQEANYGSFFPSAWTWVQ 213          
BLAST of mRNA_Ecto-sp13_S_contig62129.16934.1 vs. uniprot
Match: A0A812QNU8_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812QNU8_9DINO)

HSP 1 Score: 84.3 bits (207), Expect = 6.550e-17
Identity = 44/102 (43.14%), Postives = 54/102 (52.94%), Query Frame = 1
Query:    4 FAVDGDTGRLSFQLPE-LSVAASFRYRQPWSEERPNSAGPEGWLQR--TGLLPLHYFVHSMGSEAGYSLKATGAPRAVVGRGSIHMEANYGESFPTGWVWAQ 300
            FAV+     L    P  L V AS   R PW     ++ GPEGW  R  +GLLP HYFVHS+GS A Y++        + G G  H EANYG  FP+ W W +
Sbjct:  117 FAVNDSKSELLLTFPSGLKVEASLDNRVPWDAACKDTCGPEGWAGRLPSGLLPTHYFVHSLGSTATYAVNE------LRGFGFAHQEANYGSFFPSAWTWVE 212          
BLAST of mRNA_Ecto-sp13_S_contig62129.16934.1 vs. uniprot
Match: A0A0E9NAG3_SAICN (Uncharacterized protein n=1 Tax=Saitoella complicata (strain BCRC 22490 / CBS 7301 / JCM 7358 / NBRC 10748 / NRRL Y-17804) TaxID=698492 RepID=A0A0E9NAG3_SAICN)

HSP 1 Score: 78.2 bits (191), Expect = 8.640e-15
Identity = 42/88 (47.73%), Postives = 57/88 (64.77%), Query Frame = 1
Query:   46 PELSVAASFRYRQPWSEERPNSAGPEGWLQRTG-LLPLHYFVHSMGSEAGYSLKATGAPRAVVG-RGSIHMEANYGESFPTGWVWAQV 303
            P L++      R PWS + P S GPEG + +T  LLPLH+FV+S  S+A Y++K  G  +A+ G  G  H E N+GESFP+GW+WAQ 
Sbjct:  134 PSLTLDLEVTNRTPWSSDDPLS-GPEGPIVQTDRLLPLHWFVYSTKSKATYTIKH-GDEQALSGDNGVAHQEKNWGESFPSGWIWAQA 219          
BLAST of mRNA_Ecto-sp13_S_contig62129.16934.1 vs. uniprot
Match: A0A7M7GGY2_STRPU (Uncharacterized protein n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7GGY2_STRPU)

HSP 1 Score: 76.3 bits (186), Expect = 4.000e-14
Identity = 33/93 (35.48%), Postives = 50/93 (53.76%), Query Frame = 1
Query:   34 SFQLPELSVAASFRYRQPWSEERPNSAGPEGWLQRTGLLPLHYFVHSMGSEAGYSLKATGAPRAVVGRGSIHMEANYGESFPTGWVWAQVCGR 312
            SF +  ++ A +F     W        GPEGWL    +LP+H+FV+S+G+   Y+   +G  R + G+   H E N+G+ FP GW+W Q   R
Sbjct:  143 SFTIDGVTFAGNFTRPLLWDS---TGQGPEGWLTDLPMLPIHWFVYSLGTPGSYTWNQSG--RVISGKAHAHQEKNWGQGFPAGWMWTQAYNR 230          
BLAST of mRNA_Ecto-sp13_S_contig62129.16934.1 vs. uniprot
Match: UPI001BB0F729 (uncharacterized protein LOC121409600 n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB0F729)

HSP 1 Score: 75.1 bits (183), Expect = 1.110e-13
Identity = 36/103 (34.95%), Postives = 52/103 (50.49%), Query Frame = 1
Query:    4 FAVDGDTGRLSFQLPELSVAASFRYRQPWSEERPNSAGPEGWLQRTGLLPLHYFVHSMGSEAGYSLKATGAPRAVVGRGSIHMEANYGESFPTGWVWAQVCGR 312
            F V  D+   +F +  ++ A SF     W        GPEGWL    LLP+H+FV+S+G+   Y+   T +   + G    H E N+G+ FP GW+W Q   R
Sbjct:  149 FNVTPDSTVFNFTIEGVTFAGSFSGPLLWDS---TGQGPEGWLSNLPLLPIHWFVYSLGTPGRYTW--THSDSVISGMAHAHQEKNWGQGFPAGWMWTQAYNR 246          
BLAST of mRNA_Ecto-sp13_S_contig62129.16934.1 vs. uniprot
Match: A0A0D1C3F2_USTMA (Uncharacterized protein n=1 Tax=Ustilago maydis (strain 521 / FGSC 9021) TaxID=237631 RepID=A0A0D1C3F2_USTMA)

HSP 1 Score: 71.6 bits (174), Expect = 2.230e-12
Identity = 33/74 (44.59%), Postives = 45/74 (60.81%), Query Frame = 1
Query:  109 SAGPEGWLQRTG-LLPLHYFVHSMGSEAGYSLKATGAPRA--------VVGRGSIHMEANYGESFPTGWVWAQV 303
            S GPEGW+Q  G  LPLH++VHS  + A +SL+      A          GRG +H+E N+G+SFP+GW+WA  
Sbjct:  340 SRGPEGWIQHLGAFLPLHWYVHSSSAPAMFSLEHLAPDSARLELDNAIAAGRGLLHVEKNWGQSFPSGWMWAHA 413          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig62129.16934.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KYR0_9PHAE3.470e-6398.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQ64_ECTSI3.480e-6397.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z7D9_9STRA6.380e-3154.90Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7S0QBM1_9EUKA1.130e-2749.49Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
A0A812TWY2_9DINO1.270e-1843.24Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP... [more]
A0A812QNU8_9DINO6.550e-1743.14Hypothetical protein n=1 Tax=Symbiodinium natans T... [more]
A0A0E9NAG3_SAICN8.640e-1547.73Uncharacterized protein n=1 Tax=Saitoella complica... [more]
A0A7M7GGY2_STRPU4.000e-1435.48Uncharacterized protein n=1 Tax=Strongylocentrotus... [more]
UPI001BB0F7291.110e-1334.95uncharacterized protein LOC121409600 n=1 Tax=Lytec... [more]
A0A0D1C3F2_USTMA2.230e-1244.59Uncharacterized protein n=1 Tax=Ustilago maydis (s... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig62129contigEcto-sp13_S_contig62129:70..741 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeMetazoa
Stop0
Start0
Seed ortholog score72.8
Seed ortholog evalue1.1e-10
Seed eggNOG ortholog7668.SPU_015181-tr
Model size312
Hectar predicted targeting categoryother localisation
Exons2
EggNOG OGs2E20H@1,2S99N@2759,3A6YU@33154,3C054@33208,3DGAW@33213
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-26_005990.1
Cds size312
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463865.1274734-CDS-Ecto-sp13_S_contig62129:69..2131681463865.1274734-CDS-Ecto-sp13_S_contig62129:69..213Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig62129 70..213 -
1681463865.1406562-CDS-Ecto-sp13_S_contig62129:573..7411681463865.1406562-CDS-Ecto-sp13_S_contig62129:573..741Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig62129 574..741 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig62129.16934.1prot_Ecto-sp13_S_contig62129.16934.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig62129 70..741 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig62129.16934.1

>prot_Ecto-sp13_S_contig62129.16934.1 ID=prot_Ecto-sp13_S_contig62129.16934.1|Name=mRNA_Ecto-sp13_S_contig62129.16934.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=104bp
SFAVDGDTGRLSFQLPELSVAASFRYRQPWSEERPNSAGPEGWLQRTGLL
PLHYFVHSMGSEAGYSLKATGAPRAVVGRGSIHMEANYGESFPTGWVWAQ
VCGR
back to top

mRNA from alignment at Ecto-sp13_S_contig62129:70..741-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig62129.16934.1 ID=mRNA_Ecto-sp13_S_contig62129.16934.1|Name=mRNA_Ecto-sp13_S_contig62129.16934.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=672bp|location=Sequence derived from alignment at Ecto-sp13_S_contig62129:70..741- (Ectocarpus species13 EcNAP12_S_4_19m)
TCGTTTGCCGTTGATGGGGACACAGGCCGACTGTCCTTCCAGCTGCCAGA GCTGAGTGTAGCGGCCAGCTTCCGGTATCGACAGCCTTGGTCAGAAGAGC GGCCGAACTCCGCTGGGCCAGAGGGTTGGCTTCAGAGGACAGGGCTCCTA CCGCTGCACTACTTTGTGGTGAGGAAATTGTTTGTGCCTTGTACGAGACG GAACAGCGGTGCCAGCCTGGCCCATCATATTTTTTGTAAGTGCACCCTCA ACCTTGCACGTAGAAAGGGACGATTGGCCATCGGTGATCGGTCCTGTGAA AACAATGCTCCGTCCTCTCGAGGACGCGTGGTCAATCGTCTAATCGCTAA GGCATGCAAAACATACGAGTATGCTCCCCCTCAACCGTGCACGGACACCT TCCACCGCATGTTGGTGCAGTGTTGGAAAAGAGGTCGGTGGGGCGACCAC TTTCTAGACGTGTAGGCTATGCCGACCCACTCGCTCTGGTGTATTCTACA TAACACCATTGTTTGTTTGCGCGGACAGCATTCCATGGGAAGCGAGGCAG GGTACAGCCTTAAGGCGACCGGCGCGCCTAGAGCGGTGGTGGGGCGAGGA AGCATACACATGGAGGCCAATTACGGGGAGTCTTTCCCGACGGGATGGGT CTGGGCGCAGGTGTGTGGCCGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig62129:70..741-

>mRNA_Ecto-sp13_S_contig62129.16934.1 ID=mRNA_Ecto-sp13_S_contig62129.16934.1|Name=mRNA_Ecto-sp13_S_contig62129.16934.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=312bp|location=Sequence derived from alignment at Ecto-sp13_S_contig62129:70..741- (Ectocarpus species13 EcNAP12_S_4_19m)
TCGTTTGCCGTTGATGGGGACACAGGCCGACTGTCCTTCCAGCTGCCAGA
GCTGAGTGTAGCGGCCAGCTTCCGGTATCGACAGCCTTGGTCAGAAGAGC
GGCCGAACTCCGCTGGGCCAGAGGGTTGGCTTCAGAGGACAGGGCTCCTA
CCGCTGCACTACTTTGTGCATTCCATGGGAAGCGAGGCAGGGTACAGCCT
TAAGGCGACCGGCGCGCCTAGAGCGGTGGTGGGGCGAGGAAGCATACACA
TGGAGGCCAATTACGGGGAGTCTTTCCCGACGGGATGGGTCTGGGCGCAG
GTGTGTGGCCGA
back to top