mRNA_Ecto-sp13_S_contig612.16801.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig612.16801.1 vs. uniprot
Match: D8LJK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJK8_ECTSI) HSP 1 Score: 516 bits (1329), Expect = 1.570e-183 Identity = 264/303 (87.13%), Postives = 271/303 (89.44%), Query Frame = 1
Query: 1 MYSCSRDTTVRQWNRSGISALRVFEGHDLACTAMALSGDEKTLYSGSXXXXXXAWDVQTGQCTSSAKVPRNLVTCLKCLSGESSSSVAQGGEDLKLRVWDTRDGGLRPSMTIDGYTFFPLCLDASSDGHQILTSCKGFNGAGCETKLWDLRSPGIPVREYTGHTQDTTACVFATSKEGGDDGSGAGKGGYGLSPSPLPSLSAPSSRGMIATASKDGSVKIYDLADGDILVDHVEPECGGYTGLAIQRDSRTGAPVFYASTITGGLYALRLEAKVATAAQSQTGLQEGGLRLRCVGFVRGNPIL 909
MYSCSRDTTVRQWNRSGISALRVFEGHDLACTA+ALS DEKTLYSGSXXXXXXAWDVQTGQCTSSAKVPRNLVTCLKCLSG SSSV Q GLR SMT+DGYTFFPL LD SSDGHQ+LTSCKGFNGAGCETKLWDLRSPGIPVREYTGHTQDTTACVF TSKEGGD GSGA +GGYGLSP+P PSLSAPSSRGMIATASKDG+VKIYDLADG ILVDHVEPECGGYTGLAIQRDSRTG PVFYASTITGGLYALRLE KVATA S+TGL EGGLRLRCVGFVRGNPIL
Sbjct: 1 MYSCSRDTTVRQWNRSGISALRVFEGHDLACTAIALSEDEKTLYSGSXXXXXXAWDVQTGQCTSSAKVPRNLVTCLKCLSGGPSSSVVQXXXXXXXXXXXXXXXGLRSSMTVDGYTFFPLFLDVSSDGHQVLTSCKGFNGAGCETKLWDLRSPGIPVREYTGHTQDTTACVFVTSKEGGDGGSGAREGGYGLSPAPWPSLSAPSSRGMIATASKDGTVKIYDLADGSILVDHVEPECGGYTGLAIQRDSRTGGPVFYASTITGGLYALRLEEKVATAGTSRTGLGEGGLRLRCVGFVRGNPIL 303
BLAST of mRNA_Ecto-sp13_S_contig612.16801.1 vs. uniprot
Match: A0A6H5JBE9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE9_9PHAE) HSP 1 Score: 470 bits (1210), Expect = 2.680e-165 Identity = 250/337 (74.18%), Postives = 256/337 (75.96%), Query Frame = 1
Query: 1 MYSCSRDTTVRQWNRSGISALRVFEGHDLACTAMALSG----------------------------------DEKTLYSGSXXXXXXAWDVQTGQCTSSAKVPRNLVTCLKCLSGESSSSVAQGGEDLKLRVWDTRDGGLRPSMTIDGYTFFPLCLDASSDGHQILTSCKGFNGAGCETKLWDLRSPGIPVREYTGHTQDTTACVFATSKEGGDDGSGAGKGGYGLSPSPLPSLSAPSSRGMIATASKDGSVKIYDLADGDILVDHVEPECGGYTGLAIQRDSRTGAPVFYASTITGGLYALRLEAKVATAAQSQTGLQEGGLRLRCVGFVRGNPIL 909
MYSCSRDTTVRQWNRSGISALRVFEGHDLACTA+ALS DEK LYSGS AWDVQTGQC SSAKVPRNLVTCLKCLSGE SSSVAQGGEDLKLRVWD R+GGLRPSMTIDGYTFFPL WDLRSPGIPVREYTGHTQDTTACVF TSKEGGDDGSG + GYG+SPSP SLSAPSSRGMIATASKDG+VKIYDLADG ILVDHVEPECGGYTGLAIQRDSRTGAPVFYASTITGGLYALRLE +VATAAQSQT LQEGGLRLRCVGFVRGNPIL
Sbjct: 1 MYSCSRDTTVRQWNRSGISALRVFEGHDLACTAIALSEGDVPSQRKILPARQSILSKLFHDDDPPPYEHSLEDEKALYSGSRDTSIRAWDVQTGQCISSAKVPRNLVTCLKCLSGELSSSVAQGGEDLKLRVWDAREGGLRPSMTIDGYTFFPL---------------------------WDLRSPGIPVREYTGHTQDTTACVFVTSKEGGDDGSGVEENGYGVSPSPSTSLSAPSSRGMIATASKDGTVKIYDLADGSILVDHVEPECGGYTGLAIQRDSRTGAPVFYASTITGGLYALRLEEEVATAAQSQTELQEGGLRLRCVGFVRGNPIL 310
BLAST of mRNA_Ecto-sp13_S_contig612.16801.1 vs. uniprot
Match: A0A835ZHR6_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHR6_9STRA) HSP 1 Score: 202 bits (513), Expect = 2.530e-60 Identity = 118/276 (42.75%), Postives = 149/276 (53.99%), Query Frame = 1
Query: 4 YSCSRDTTVRQWNRSGISALRVFEGHDLACTAMALSGDEKTLYSGSXXXXXXAWDVQTGQCTSSAKVPRNLVTCLKCLSGESSSSVA-QGGEDLKLRVWDTRDGGLRPSMTIDGYTFFPLCLDASSDGHQILTSCKGFNGAGCETKLWDLRSPGIPVREYTGHTQDTTACVFATSKEGGDDGSGAGKGGYGLSPSPLPSLSAPSSRGMIATASKDGSVK--IYDLADGDILVDHVEPE-------CGGYTGLAI---QRDSRTGAPVF-YASTITG 789
YS SRDTT+ QW + G L + GH L +A+ LS DE L+SGS WDV TGQ PRNLVTCLKC+ GE ++V QGGEDLKLR+WD R P+ T+DG+ +FPLCLD S DG+ +LT KGFN GCE +LWD R+ G V+EY GH QD TAC+ A P+ A SS G + TASKD ++K ++ G +L D EP GG L + + T APV AS++ G
Sbjct: 7 YSASRDTTLAQWGQ-GEGPLATYRGHTLTVSALDLSADETHLWSGSRDTSVRLWDVSTGQQRGMVATPRNLVTCLKCMPGEEGTNVVVQGGEDLKLRLWDFRTPSSVPAQTLDGFVYFPLCLDVSEDGNYLLTGSKGFNSVGCEGRLWDRRT-GQVVQEYNGHAQDVTACLLA------------------------PAALAASSGGAVITASKDQTIKARVWGRESGQLLSDFAEPHRLCAATFTGGLYDLQLSEGEAGGETAAPVLSVASSVAG 256
BLAST of mRNA_Ecto-sp13_S_contig612.16801.1 vs. uniprot
Match: F0YK25_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YK25_AURAN) HSP 1 Score: 163 bits (412), Expect = 9.530e-46 Identity = 96/252 (38.10%), Postives = 125/252 (49.60%), Query Frame = 1
Query: 1 MYSCSRDTTVRQWNRSGISAL----RVFEGHDLACTAMALSGDEKTLYSGSXXXXXXAWDVQTGQCTSSAKVPRNLVTCLKCLSGESSSSVAQGGEDLKLRVWDTRDGGLRPSMTIDGYTFFPLCLDASSDGHQILTSCKGFNGAGCETKLWDLRSPGIPVREYTGHTQDTTACVFATSKEGGDDGSGAGKGGYGLSPSPLPSLSAPSSRGMIATASKDGSVKIYDL----ADGDILVDHVEPECGGYTGLA 732
+YSCSRD T+ QW+ + L VF GH+L TA+A+S D + + SGS WD TG S ++PRN+VTC L G + AQG EDLKLR+WDTR+ YTFFPL + S DGH I T+ KGFN GCE ++WD R PG + + GH QD T +F + + +ASKD S+K++DL D I VD CG YT L+
Sbjct: 1 IYSCSRDLTIAQWSLDVEAELDSPVSVFRGHELNVTAVAVSDDGRIVSSGSRDCSVRMWDATTGAERGSVRIPRNVVTCTCWLPG--TPVFAQGSEDLKLRLWDTRNLRKEAVQVFGTYTFFPLATNVSGDGHLIATTSKGFNRQGCEVRVWDRRKPGAALCQMHGHQQDATGIIFLDEQN------------------------------KVVSASKDSSIKVWDLNTFKLDRTIHVDG----CGMYTSLS 216
BLAST of mRNA_Ecto-sp13_S_contig612.16801.1 vs. uniprot
Match: K3WSF6_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSF6_GLOUD) HSP 1 Score: 164 bits (414), Expect = 1.930e-44 Identity = 99/268 (36.94%), Postives = 138/268 (51.49%), Query Frame = 1
Query: 1 MYSCSRDTTVRQWNR------SGISALR------VFEGHDLACTAMALSGDEKTLYSGSXXXXXXAWDVQTGQCTSSAKVPRNLVTCLKCLSGESSSSVAQGGEDLKLRVWDTRDGGLRPSMTIDGYTFFPLCLDASSDGHQILTSCKGFNGAGCETKLWDLRSPGIPVREYTGHTQDTTACVFATSKEGGDDGSGAGKGGYGLSPSPLPSLSAPSSRGMIATASKDGSVKIYDLADGDILVDHVEPECGGYTGLAIQRDSRTGAPVF 768
+YSCSRDTT+ + S S+ R GH L + +A++ DE +L SG WD+ TG+ + +N++TC K + E V QG EDL L++WD R P+ + GY +F LC+D S DG+ LTS KGFNG GCE ++WD R+ G + E+ GH QDTT+C F S G SP S+ A S+ + TASKDGSVK++D A +L + +EP G +T + S A F
Sbjct: 79 IYSCSRDTTIALTSHIASKSSSPSSSSRKQPQPVYLRGHHLNVSTIAVNDDETSLCSGGRDTQTIFWDLTTGRLKAKNTTSQNVITCSKWVPVE--PLVVQGSEDLTLKLWDERTNLRAPAQSFHGYVYFALCVDVSPDGNYFLTSSKGFNGVGCEVRIWDRRT-GKQLYEFNGHQQDTTSCCFLPSATGSSSNDSV--------TSPADSVRA-SAIPIPVTASKDGSVKVWDAATSSVLCEALEPSGGMFTSICAVDSSTVLASTF 334
BLAST of mRNA_Ecto-sp13_S_contig612.16801.1 vs. uniprot
Match: A0A067CE75_SAPPC (Uncharacterized protein (Fragment) n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CE75_SAPPC) HSP 1 Score: 159 bits (402), Expect = 7.220e-43 Identity = 92/250 (36.80%), Postives = 130/250 (52.00%), Query Frame = 1
Query: 1 MYSCSRDTTVRQWNRSG----ISALRVFEGHDLACTAMALSGDEKTLYSGSXXXXXXAWDVQTGQCTSSAKVPRNLVTCLKCLSGESSSSVAQGGEDLKLRVWDTRDGGLRPSMTIDGYTFFPLCLDASSDGHQILTSCKGFNGAGCETKLWDLRSPGIPVREYTGHTQDTTACVFATSKEGGDDGSGAGKGGYGLSPSPLPSLSAPSSRGMIATASKDGSVKIYDLADGDILVDHVEPECGGYTGLAIQ 738
+Y+CSRDTT+ Q + +A + F GH L+ +A+A++ E L SGS WDV TG +N+VTC+ + + + VAQGGEDL +R+WD R P+ TI GY +FPL +DAS DG+ +LTS KGFNG GCE ++WD R+ G V E H QD TAC + K TASKD S++I++ A G+++ + G +TG+A Q
Sbjct: 93 LYACSRDTTISQQAIASSDVPAAAPQSFTGHTLSVSAIAINAPETHLASGSRDTGTSLWDVTTGTRVQHTTTSQNIVTCMTWVP-QCETLVAQGGEDLCVRLWDARSWK-SPAQTIQGYVYFPLSIDASDDGNYLLTSSKGFNGVGCEGRVWDRRT-GKLVTEMHVHLQDATACAYVRHKNA-----------------------------FAVTASKDSSLRIWNSASGELVASSFDQSSGMFTGVACQ 310
BLAST of mRNA_Ecto-sp13_S_contig612.16801.1 vs. uniprot
Match: T0QNJ3_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QNJ3_SAPDV) HSP 1 Score: 157 bits (396), Expect = 8.070e-42 Identity = 92/266 (34.59%), Postives = 137/266 (51.50%), Query Frame = 1
Query: 1 MYSCSRDTTVRQWNRSGI---SALRVFEGHDLACTAMALSGDEKTLYSGSXXXXXXAWDVQTGQCTSSAKVPRNLVTCLKCLSGESSSSVAQGGEDLKLRVWDTRDGGLRPSMTIDGYTFFPLCLDASSDGHQILTSCKGFNGAGCETKLWDLRSPGIPVREYTGHTQDTTACVFATSKEGGDDGSGAGKGGYGLSPSPLPSLSAPSSRGMIATASKDGSVKIYDLADGDILVDHVEPECGGYTGLAIQRDSRTGAPVFYASTITG 789
+Y+CSRDTT+ Q S +A + F GH L+ +A+A++ E L SGS WDV T +N+VTC+ + + + +AQGGEDL +R+WDTR P+ TI GY +FPL +DAS DG+ +LTS KGFNG GCE ++WD R+ G V E GH QD +AC + K Y + TASKD S++I++ A G+++ + G +T +A + + + ++ G
Sbjct: 98 LYACSRDTTISQHVLSSSDAPTAPQSFTGHTLSVSALAINAAESNLASGSRDTGTSLWDVTTRARVQHTTTSQNIVTCMTWVP-QCETLLAQGGEDLCVRLWDTRSWK-SPAQTIQGYVYFPLSIDASDDGNYLLTSSKGFNGVGCEGRVWDRRT-GKLVTEMHGHLQDASACAYMRHKNA-----------YAV------------------TASKDSSLRIWNSASGELITSSFDHSSGMFTSVACRSVETSDEVTVFTTSFAG 331
BLAST of mRNA_Ecto-sp13_S_contig612.16801.1 vs. uniprot
Match: A0A485KVW2_9STRA (Aste57867_12386 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KVW2_9STRA) HSP 1 Score: 155 bits (391), Expect = 8.490e-41 Identity = 89/265 (33.58%), Postives = 133/265 (50.19%), Query Frame = 1
Query: 1 MYSCSRDTTVRQW------------NRSGISALRVFEGHDLACTAMALSGDEKTLYSGSXXXXXXAWDVQTGQCTSSAKVPRNLVTCLKCLSGESSSSVAQGGEDLKLRVWDTRDGGLRPSMTIDGYTFFPLCLDASSDGHQILTSCKGFNGAGCETKLWDLRSPGIPVREYTGHTQDTTACVFATSKEGGDDGSGAGKGGYGLSPSPLPSLSAPSSRGMIATASKDGSVKIYDLADGDILVDHVEPECGGYTGLAIQRDSRTGA 759
+YSCSRDTT+ + + + ++ + GH L +A+A++ E TL SGS WDV T +N+VTC+ + + ++ VAQGGEDL++R+WD R P+ TI+GY +FPL + S DGH +LTS KGFN GCE ++WD R+ G V E GH QD TAC + G+ G+ TASKD S++++D GD+L + G +T ++ + T +
Sbjct: 117 LYSCSRDTTIARHTFGSLANDPTTPSPTAVTTHPPYHGHTLTVSALAINESESTLASGSRDTGVSLWDVATSMRRQHTITSQNIVTCMAWVPRD-ANVVAQGGEDLRVRLWDAR-AWKAPTQTIEGYIYFPLSIACSDDGHYLLTSSKGFNAVGCEGRVWDRRT-GKQVAEMRGHAQDATACAYIP-----------GRNHEGI------------------TASKDSSIRVWDTTTGDLLASTQDANAGMFTSVSCVPNDTTSS 349
BLAST of mRNA_Ecto-sp13_S_contig612.16801.1 vs. uniprot
Match: UPI0009E229CA (WD repeat-containing protein 31-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E229CA) HSP 1 Score: 150 bits (379), Expect = 2.890e-39 Identity = 92/248 (37.10%), Postives = 124/248 (50.00%), Query Frame = 1
Query: 1 MYSCSRDTTVRQWNRSGISALRVFEGHDLACTAMALSGDEKTLYSGSXXXXXXAWDVQTGQCTSSAKVPRNLVTCLKCLSGESSSSVAQGGEDLKLRVWDTRDGGLRPSMTIDGYTFFPLCLDASSDGHQILTSCKGFNGAGCETKLWDLRSPGIPVREYTGHTQDTTACVFATSKEGGDDGSGAGKGGYGLSPSPLPSLSAPSSRGMIATASKDGSVKIYDLADGDILVDHVEPECGGYTGLAIQRD 744
+YS SRD T++ W++ L FEGH L TA+ L+ D L+SGS WD S +V RNLV+C+K + G + + VAQ GED LRVWDTR+ ++P T +F D S DG ILT GFNG GCE+ LWD+R+ + R Y GH Q T+AC+F LP L S+ +IATAS D +VKI++ + + G T L + D
Sbjct: 106 VYSSSRDKTIKAWHQEKNDPLLTFEGHRLVVTAIDLNDDGTLLFSGSRDNCVRLWDTTRKTSVSEKEVSRNLVSCVKWIPG-TQTQVAQTGEDKMLRVWDTRN--MQPVFTFPAQQYFQTYCDCSRDGRFILTCSNGFNGKGCESTLWDVRAQQMICR-YIGHYQTTSACIF------------------------LPRLEHVWSKDLIATASHDSTVKIWEREGTECITTLDCAGAGPLTDLCVWDD 325
BLAST of mRNA_Ecto-sp13_S_contig612.16801.1 vs. uniprot
Match: A0A1V9Z8M6_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z8M6_9STRA) HSP 1 Score: 148 bits (374), Expect = 1.780e-38 Identity = 95/294 (32.31%), Postives = 135/294 (45.92%), Query Frame = 1
Query: 1 MYSCSRDTTVRQWNRSGISALRV-----FEGHDLACTAMALSGDEKTLYSGSXXXXXXAWDVQTGQCTSSAKVPRNLVTCLKCLSGESSSSVAQGGEDLKLRVWDTRDGGLRPSMTIDGYTFFPLCLDASSDGHQILTSCKG-------------FNGAGCETKLWDLRSPGIPVREYTGHTQDTTACVFATSKEGGDDGSGAGKGGYGLSPSPLPSLSAPSSRGMIATASKDGSVKIYDLADGDILVDHVEPECGGYTGLAIQRDSRTGAPVFYASTITGGLYALRLEAKVAT 828
+Y+CSRDTT+ ++ A+ F GH L+ +A+ ++G E L SGS WDV T +N+VTC+ + + VAQGGEDL++R+WD+R P TI+GY +FPL LD S DG+ ILTS KG FNG GCE ++WD R+ G V E GH QD TAC + + + TASKD S+++++ A G ++ + G +T L G + S+ TG L AT
Sbjct: 97 LYACSRDTTISRYRLDFDGAVNTVKMESFAGHSLSVSAITINGSETQLASGSRDTSVSLWDVATTTQLQHTTTSQNIVTCMAWVPIH-DTLVAQGGEDLRVRIWDSR-AWKSPVQTIEGYVYFPLSLDVSDDGNYILTSSKGTILSWICWLMPLGFNGVGCEGRVWDRRT-GKQVCEMAGHLQDATACSYIKQRNE-----------------------------YVLTASKDSSLRVWNSASGALVSSTYDHALGMFTALTSLPPDDAGIVRIFTSSFTGHLAVYAFNTATAT 358 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig612.16801.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig612.16801.1 >prot_Ecto-sp13_S_contig612.16801.1 ID=prot_Ecto-sp13_S_contig612.16801.1|Name=mRNA_Ecto-sp13_S_contig612.16801.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=304bp MYSCSRDTTVRQWNRSGISALRVFEGHDLACTAMALSGDEKTLYSGSRDTback to top mRNA from alignment at Ecto-sp13_S_contig612:1239..4788- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig612.16801.1 ID=mRNA_Ecto-sp13_S_contig612.16801.1|Name=mRNA_Ecto-sp13_S_contig612.16801.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3550bp|location=Sequence derived from alignment at Ecto-sp13_S_contig612:1239..4788- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig612:1239..4788- >mRNA_Ecto-sp13_S_contig612.16801.1 ID=mRNA_Ecto-sp13_S_contig612.16801.1|Name=mRNA_Ecto-sp13_S_contig612.16801.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=912bp|location=Sequence derived from alignment at Ecto-sp13_S_contig612:1239..4788- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |