mRNA_Ecto-sp13_S_contig612.16801.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig612.16801.1
Unique NamemRNA_Ecto-sp13_S_contig612.16801.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig612.16801.1 vs. uniprot
Match: D8LJK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJK8_ECTSI)

HSP 1 Score: 516 bits (1329), Expect = 1.570e-183
Identity = 264/303 (87.13%), Postives = 271/303 (89.44%), Query Frame = 1
Query:    1 MYSCSRDTTVRQWNRSGISALRVFEGHDLACTAMALSGDEKTLYSGSXXXXXXAWDVQTGQCTSSAKVPRNLVTCLKCLSGESSSSVAQGGEDLKLRVWDTRDGGLRPSMTIDGYTFFPLCLDASSDGHQILTSCKGFNGAGCETKLWDLRSPGIPVREYTGHTQDTTACVFATSKEGGDDGSGAGKGGYGLSPSPLPSLSAPSSRGMIATASKDGSVKIYDLADGDILVDHVEPECGGYTGLAIQRDSRTGAPVFYASTITGGLYALRLEAKVATAAQSQTGLQEGGLRLRCVGFVRGNPIL 909
            MYSCSRDTTVRQWNRSGISALRVFEGHDLACTA+ALS DEKTLYSGSXXXXXXAWDVQTGQCTSSAKVPRNLVTCLKCLSG  SSSV Q               GLR SMT+DGYTFFPL LD SSDGHQ+LTSCKGFNGAGCETKLWDLRSPGIPVREYTGHTQDTTACVF TSKEGGD GSGA +GGYGLSP+P PSLSAPSSRGMIATASKDG+VKIYDLADG ILVDHVEPECGGYTGLAIQRDSRTG PVFYASTITGGLYALRLE KVATA  S+TGL EGGLRLRCVGFVRGNPIL
Sbjct:    1 MYSCSRDTTVRQWNRSGISALRVFEGHDLACTAIALSEDEKTLYSGSXXXXXXAWDVQTGQCTSSAKVPRNLVTCLKCLSGGPSSSVVQXXXXXXXXXXXXXXXGLRSSMTVDGYTFFPLFLDVSSDGHQVLTSCKGFNGAGCETKLWDLRSPGIPVREYTGHTQDTTACVFVTSKEGGDGGSGAREGGYGLSPAPWPSLSAPSSRGMIATASKDGTVKIYDLADGSILVDHVEPECGGYTGLAIQRDSRTGGPVFYASTITGGLYALRLEEKVATAGTSRTGLGEGGLRLRCVGFVRGNPIL 303          
BLAST of mRNA_Ecto-sp13_S_contig612.16801.1 vs. uniprot
Match: A0A6H5JBE9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE9_9PHAE)

HSP 1 Score: 470 bits (1210), Expect = 2.680e-165
Identity = 250/337 (74.18%), Postives = 256/337 (75.96%), Query Frame = 1
Query:    1 MYSCSRDTTVRQWNRSGISALRVFEGHDLACTAMALSG----------------------------------DEKTLYSGSXXXXXXAWDVQTGQCTSSAKVPRNLVTCLKCLSGESSSSVAQGGEDLKLRVWDTRDGGLRPSMTIDGYTFFPLCLDASSDGHQILTSCKGFNGAGCETKLWDLRSPGIPVREYTGHTQDTTACVFATSKEGGDDGSGAGKGGYGLSPSPLPSLSAPSSRGMIATASKDGSVKIYDLADGDILVDHVEPECGGYTGLAIQRDSRTGAPVFYASTITGGLYALRLEAKVATAAQSQTGLQEGGLRLRCVGFVRGNPIL 909
            MYSCSRDTTVRQWNRSGISALRVFEGHDLACTA+ALS                                   DEK LYSGS      AWDVQTGQC SSAKVPRNLVTCLKCLSGE SSSVAQGGEDLKLRVWD R+GGLRPSMTIDGYTFFPL                           WDLRSPGIPVREYTGHTQDTTACVF TSKEGGDDGSG  + GYG+SPSP  SLSAPSSRGMIATASKDG+VKIYDLADG ILVDHVEPECGGYTGLAIQRDSRTGAPVFYASTITGGLYALRLE +VATAAQSQT LQEGGLRLRCVGFVRGNPIL
Sbjct:    1 MYSCSRDTTVRQWNRSGISALRVFEGHDLACTAIALSEGDVPSQRKILPARQSILSKLFHDDDPPPYEHSLEDEKALYSGSRDTSIRAWDVQTGQCISSAKVPRNLVTCLKCLSGELSSSVAQGGEDLKLRVWDAREGGLRPSMTIDGYTFFPL---------------------------WDLRSPGIPVREYTGHTQDTTACVFVTSKEGGDDGSGVEENGYGVSPSPSTSLSAPSSRGMIATASKDGTVKIYDLADGSILVDHVEPECGGYTGLAIQRDSRTGAPVFYASTITGGLYALRLEEEVATAAQSQTELQEGGLRLRCVGFVRGNPIL 310          
BLAST of mRNA_Ecto-sp13_S_contig612.16801.1 vs. uniprot
Match: A0A835ZHR6_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHR6_9STRA)

HSP 1 Score: 202 bits (513), Expect = 2.530e-60
Identity = 118/276 (42.75%), Postives = 149/276 (53.99%), Query Frame = 1
Query:    4 YSCSRDTTVRQWNRSGISALRVFEGHDLACTAMALSGDEKTLYSGSXXXXXXAWDVQTGQCTSSAKVPRNLVTCLKCLSGESSSSVA-QGGEDLKLRVWDTRDGGLRPSMTIDGYTFFPLCLDASSDGHQILTSCKGFNGAGCETKLWDLRSPGIPVREYTGHTQDTTACVFATSKEGGDDGSGAGKGGYGLSPSPLPSLSAPSSRGMIATASKDGSVK--IYDLADGDILVDHVEPE-------CGGYTGLAI---QRDSRTGAPVF-YASTITG 789
            YS SRDTT+ QW + G   L  + GH L  +A+ LS DE  L+SGS       WDV TGQ       PRNLVTCLKC+ GE  ++V  QGGEDLKLR+WD R     P+ T+DG+ +FPLCLD S DG+ +LT  KGFN  GCE +LWD R+ G  V+EY GH QD TAC+ A                        P+  A SS G + TASKD ++K  ++    G +L D  EP         GG   L +   +    T APV   AS++ G
Sbjct:    7 YSASRDTTLAQWGQ-GEGPLATYRGHTLTVSALDLSADETHLWSGSRDTSVRLWDVSTGQQRGMVATPRNLVTCLKCMPGEEGTNVVVQGGEDLKLRLWDFRTPSSVPAQTLDGFVYFPLCLDVSEDGNYLLTGSKGFNSVGCEGRLWDRRT-GQVVQEYNGHAQDVTACLLA------------------------PAALAASSGGAVITASKDQTIKARVWGRESGQLLSDFAEPHRLCAATFTGGLYDLQLSEGEAGGETAAPVLSVASSVAG 256          
BLAST of mRNA_Ecto-sp13_S_contig612.16801.1 vs. uniprot
Match: F0YK25_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YK25_AURAN)

HSP 1 Score: 163 bits (412), Expect = 9.530e-46
Identity = 96/252 (38.10%), Postives = 125/252 (49.60%), Query Frame = 1
Query:    1 MYSCSRDTTVRQWNRSGISAL----RVFEGHDLACTAMALSGDEKTLYSGSXXXXXXAWDVQTGQCTSSAKVPRNLVTCLKCLSGESSSSVAQGGEDLKLRVWDTRDGGLRPSMTIDGYTFFPLCLDASSDGHQILTSCKGFNGAGCETKLWDLRSPGIPVREYTGHTQDTTACVFATSKEGGDDGSGAGKGGYGLSPSPLPSLSAPSSRGMIATASKDGSVKIYDL----ADGDILVDHVEPECGGYTGLA 732
            +YSCSRD T+ QW+    + L     VF GH+L  TA+A+S D + + SGS       WD  TG    S ++PRN+VTC   L G  +   AQG EDLKLR+WDTR+           YTFFPL  + S DGH I T+ KGFN  GCE ++WD R PG  + +  GH QD T  +F   +                                + +ASKD S+K++DL     D  I VD     CG YT L+
Sbjct:    1 IYSCSRDLTIAQWSLDVEAELDSPVSVFRGHELNVTAVAVSDDGRIVSSGSRDCSVRMWDATTGAERGSVRIPRNVVTCTCWLPG--TPVFAQGSEDLKLRLWDTRNLRKEAVQVFGTYTFFPLATNVSGDGHLIATTSKGFNRQGCEVRVWDRRKPGAALCQMHGHQQDATGIIFLDEQN------------------------------KVVSASKDSSIKVWDLNTFKLDRTIHVDG----CGMYTSLS 216          
BLAST of mRNA_Ecto-sp13_S_contig612.16801.1 vs. uniprot
Match: K3WSF6_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSF6_GLOUD)

HSP 1 Score: 164 bits (414), Expect = 1.930e-44
Identity = 99/268 (36.94%), Postives = 138/268 (51.49%), Query Frame = 1
Query:    1 MYSCSRDTTVRQWNR------SGISALR------VFEGHDLACTAMALSGDEKTLYSGSXXXXXXAWDVQTGQCTSSAKVPRNLVTCLKCLSGESSSSVAQGGEDLKLRVWDTRDGGLRPSMTIDGYTFFPLCLDASSDGHQILTSCKGFNGAGCETKLWDLRSPGIPVREYTGHTQDTTACVFATSKEGGDDGSGAGKGGYGLSPSPLPSLSAPSSRGMIATASKDGSVKIYDLADGDILVDHVEPECGGYTGLAIQRDSRTGAPVF 768
            +YSCSRDTT+   +       S  S+ R         GH L  + +A++ DE +L SG        WD+ TG+  +     +N++TC K +  E    V QG EDL L++WD R     P+ +  GY +F LC+D S DG+  LTS KGFNG GCE ++WD R+ G  + E+ GH QDTT+C F  S  G                SP  S+ A S+  +  TASKDGSVK++D A   +L + +EP  G +T +     S   A  F
Sbjct:   79 IYSCSRDTTIALTSHIASKSSSPSSSSRKQPQPVYLRGHHLNVSTIAVNDDETSLCSGGRDTQTIFWDLTTGRLKAKNTTSQNVITCSKWVPVE--PLVVQGSEDLTLKLWDERTNLRAPAQSFHGYVYFALCVDVSPDGNYFLTSSKGFNGVGCEVRIWDRRT-GKQLYEFNGHQQDTTSCCFLPSATGSSSNDSV--------TSPADSVRA-SAIPIPVTASKDGSVKVWDAATSSVLCEALEPSGGMFTSICAVDSSTVLASTF 334          
BLAST of mRNA_Ecto-sp13_S_contig612.16801.1 vs. uniprot
Match: A0A067CE75_SAPPC (Uncharacterized protein (Fragment) n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CE75_SAPPC)

HSP 1 Score: 159 bits (402), Expect = 7.220e-43
Identity = 92/250 (36.80%), Postives = 130/250 (52.00%), Query Frame = 1
Query:    1 MYSCSRDTTVRQWNRSG----ISALRVFEGHDLACTAMALSGDEKTLYSGSXXXXXXAWDVQTGQCTSSAKVPRNLVTCLKCLSGESSSSVAQGGEDLKLRVWDTRDGGLRPSMTIDGYTFFPLCLDASSDGHQILTSCKGFNGAGCETKLWDLRSPGIPVREYTGHTQDTTACVFATSKEGGDDGSGAGKGGYGLSPSPLPSLSAPSSRGMIATASKDGSVKIYDLADGDILVDHVEPECGGYTGLAIQ 738
            +Y+CSRDTT+ Q   +      +A + F GH L+ +A+A++  E  L SGS       WDV TG         +N+VTC+  +  +  + VAQGGEDL +R+WD R     P+ TI GY +FPL +DAS DG+ +LTS KGFNG GCE ++WD R+ G  V E   H QD TAC +   K                                  TASKD S++I++ A G+++    +   G +TG+A Q
Sbjct:   93 LYACSRDTTISQQAIASSDVPAAAPQSFTGHTLSVSAIAINAPETHLASGSRDTGTSLWDVTTGTRVQHTTTSQNIVTCMTWVP-QCETLVAQGGEDLCVRLWDARSWK-SPAQTIQGYVYFPLSIDASDDGNYLLTSSKGFNGVGCEGRVWDRRT-GKLVTEMHVHLQDATACAYVRHKNA-----------------------------FAVTASKDSSLRIWNSASGELVASSFDQSSGMFTGVACQ 310          
BLAST of mRNA_Ecto-sp13_S_contig612.16801.1 vs. uniprot
Match: T0QNJ3_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QNJ3_SAPDV)

HSP 1 Score: 157 bits (396), Expect = 8.070e-42
Identity = 92/266 (34.59%), Postives = 137/266 (51.50%), Query Frame = 1
Query:    1 MYSCSRDTTVRQWNRSGI---SALRVFEGHDLACTAMALSGDEKTLYSGSXXXXXXAWDVQTGQCTSSAKVPRNLVTCLKCLSGESSSSVAQGGEDLKLRVWDTRDGGLRPSMTIDGYTFFPLCLDASSDGHQILTSCKGFNGAGCETKLWDLRSPGIPVREYTGHTQDTTACVFATSKEGGDDGSGAGKGGYGLSPSPLPSLSAPSSRGMIATASKDGSVKIYDLADGDILVDHVEPECGGYTGLAIQRDSRTGAPVFYASTITG 789
            +Y+CSRDTT+ Q   S     +A + F GH L+ +A+A++  E  L SGS       WDV T          +N+VTC+  +  +  + +AQGGEDL +R+WDTR     P+ TI GY +FPL +DAS DG+ +LTS KGFNG GCE ++WD R+ G  V E  GH QD +AC +   K             Y +                  TASKD S++I++ A G+++    +   G +T +A +    +     + ++  G
Sbjct:   98 LYACSRDTTISQHVLSSSDAPTAPQSFTGHTLSVSALAINAAESNLASGSRDTGTSLWDVTTRARVQHTTTSQNIVTCMTWVP-QCETLLAQGGEDLCVRLWDTRSWK-SPAQTIQGYVYFPLSIDASDDGNYLLTSSKGFNGVGCEGRVWDRRT-GKLVTEMHGHLQDASACAYMRHKNA-----------YAV------------------TASKDSSLRIWNSASGELITSSFDHSSGMFTSVACRSVETSDEVTVFTTSFAG 331          
BLAST of mRNA_Ecto-sp13_S_contig612.16801.1 vs. uniprot
Match: A0A485KVW2_9STRA (Aste57867_12386 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KVW2_9STRA)

HSP 1 Score: 155 bits (391), Expect = 8.490e-41
Identity = 89/265 (33.58%), Postives = 133/265 (50.19%), Query Frame = 1
Query:    1 MYSCSRDTTVRQW------------NRSGISALRVFEGHDLACTAMALSGDEKTLYSGSXXXXXXAWDVQTGQCTSSAKVPRNLVTCLKCLSGESSSSVAQGGEDLKLRVWDTRDGGLRPSMTIDGYTFFPLCLDASSDGHQILTSCKGFNGAGCETKLWDLRSPGIPVREYTGHTQDTTACVFATSKEGGDDGSGAGKGGYGLSPSPLPSLSAPSSRGMIATASKDGSVKIYDLADGDILVDHVEPECGGYTGLAIQRDSRTGA 759
            +YSCSRDTT+ +             + + ++    + GH L  +A+A++  E TL SGS       WDV T          +N+VTC+  +  + ++ VAQGGEDL++R+WD R     P+ TI+GY +FPL +  S DGH +LTS KGFN  GCE ++WD R+ G  V E  GH QD TAC +             G+   G+                  TASKD S++++D   GD+L    +   G +T ++   +  T +
Sbjct:  117 LYSCSRDTTIARHTFGSLANDPTTPSPTAVTTHPPYHGHTLTVSALAINESESTLASGSRDTGVSLWDVATSMRRQHTITSQNIVTCMAWVPRD-ANVVAQGGEDLRVRLWDAR-AWKAPTQTIEGYIYFPLSIACSDDGHYLLTSSKGFNAVGCEGRVWDRRT-GKQVAEMRGHAQDATACAYIP-----------GRNHEGI------------------TASKDSSIRVWDTTTGDLLASTQDANAGMFTSVSCVPNDTTSS 349          
BLAST of mRNA_Ecto-sp13_S_contig612.16801.1 vs. uniprot
Match: UPI0009E229CA (WD repeat-containing protein 31-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E229CA)

HSP 1 Score: 150 bits (379), Expect = 2.890e-39
Identity = 92/248 (37.10%), Postives = 124/248 (50.00%), Query Frame = 1
Query:    1 MYSCSRDTTVRQWNRSGISALRVFEGHDLACTAMALSGDEKTLYSGSXXXXXXAWDVQTGQCTSSAKVPRNLVTCLKCLSGESSSSVAQGGEDLKLRVWDTRDGGLRPSMTIDGYTFFPLCLDASSDGHQILTSCKGFNGAGCETKLWDLRSPGIPVREYTGHTQDTTACVFATSKEGGDDGSGAGKGGYGLSPSPLPSLSAPSSRGMIATASKDGSVKIYDLADGDILVDHVEPECGGYTGLAIQRD 744
            +YS SRD T++ W++     L  FEGH L  TA+ L+ D   L+SGS       WD       S  +V RNLV+C+K + G + + VAQ GED  LRVWDTR+  ++P  T     +F    D S DG  ILT   GFNG GCE+ LWD+R+  +  R Y GH Q T+AC+F                        LP L    S+ +IATAS D +VKI++    + +        G  T L +  D
Sbjct:  106 VYSSSRDKTIKAWHQEKNDPLLTFEGHRLVVTAIDLNDDGTLLFSGSRDNCVRLWDTTRKTSVSEKEVSRNLVSCVKWIPG-TQTQVAQTGEDKMLRVWDTRN--MQPVFTFPAQQYFQTYCDCSRDGRFILTCSNGFNGKGCESTLWDVRAQQMICR-YIGHYQTTSACIF------------------------LPRLEHVWSKDLIATASHDSTVKIWEREGTECITTLDCAGAGPLTDLCVWDD 325          
BLAST of mRNA_Ecto-sp13_S_contig612.16801.1 vs. uniprot
Match: A0A1V9Z8M6_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z8M6_9STRA)

HSP 1 Score: 148 bits (374), Expect = 1.780e-38
Identity = 95/294 (32.31%), Postives = 135/294 (45.92%), Query Frame = 1
Query:    1 MYSCSRDTTVRQWNRSGISALRV-----FEGHDLACTAMALSGDEKTLYSGSXXXXXXAWDVQTGQCTSSAKVPRNLVTCLKCLSGESSSSVAQGGEDLKLRVWDTRDGGLRPSMTIDGYTFFPLCLDASSDGHQILTSCKG-------------FNGAGCETKLWDLRSPGIPVREYTGHTQDTTACVFATSKEGGDDGSGAGKGGYGLSPSPLPSLSAPSSRGMIATASKDGSVKIYDLADGDILVDHVEPECGGYTGLAIQRDSRTGAPVFYASTITGGLYALRLEAKVAT 828
            +Y+CSRDTT+ ++      A+       F GH L+ +A+ ++G E  L SGS       WDV T          +N+VTC+  +     + VAQGGEDL++R+WD+R     P  TI+GY +FPL LD S DG+ ILTS KG             FNG GCE ++WD R+ G  V E  GH QD TAC +   +                                + TASKD S+++++ A G ++    +   G +T L        G    + S+ TG L         AT
Sbjct:   97 LYACSRDTTISRYRLDFDGAVNTVKMESFAGHSLSVSAITINGSETQLASGSRDTSVSLWDVATTTQLQHTTTSQNIVTCMAWVPIH-DTLVAQGGEDLRVRIWDSR-AWKSPVQTIEGYVYFPLSLDVSDDGNYILTSSKGTILSWICWLMPLGFNGVGCEGRVWDRRT-GKQVCEMAGHLQDATACSYIKQRNE-----------------------------YVLTASKDSSLRVWNSASGALVSSTYDHALGMFTALTSLPPDDAGIVRIFTSSFTGHLAVYAFNTATAT 358          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig612.16801.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJK8_ECTSI1.570e-18387.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JBE9_9PHAE2.680e-16574.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZHR6_9STRA2.530e-6042.75WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
F0YK25_AURAN9.530e-4638.10Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
K3WSF6_GLOUD1.930e-4436.94Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A067CE75_SAPPC7.220e-4336.80Uncharacterized protein (Fragment) n=1 Tax=Saprole... [more]
T0QNJ3_SAPDV8.070e-4234.59Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A485KVW2_9STRA8.490e-4133.58Aste57867_12386 protein n=1 Tax=Aphanomyces stella... [more]
UPI0009E229CA2.890e-3937.10WD repeat-containing protein 31-like n=1 Tax=Orbic... [more]
A0A1V9Z8M6_9STRA1.780e-3832.31Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig612contigEcto-sp13_S_contig612:1239..4788 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score518.8
Seed ortholog evalue1.7e-144
Seed eggNOG ortholog2880.D8LJK8
Preferred nameWDR31
Model size912
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.positive regulation of Golgi to plasma membrane protein transport
EggNOG OGsKOG0279@1,KOG0279@2759
Cds size912
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463852.9806383-CDS-Ecto-sp13_S_contig612:1238..14701681463852.9806383-CDS-Ecto-sp13_S_contig612:1238..1470Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig612 1239..1470 -
1681463852.9907968-CDS-Ecto-sp13_S_contig612:2315..25571681463852.9907968-CDS-Ecto-sp13_S_contig612:2315..2557Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig612 2316..2557 -
1681463852.9997258-CDS-Ecto-sp13_S_contig612:3565..36461681463852.9997258-CDS-Ecto-sp13_S_contig612:3565..3646Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig612 3566..3646 -
1681463853.0088906-CDS-Ecto-sp13_S_contig612:4026..42681681463853.0088906-CDS-Ecto-sp13_S_contig612:4026..4268Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig612 4027..4268 -
1681463853.0176146-CDS-Ecto-sp13_S_contig612:4673..47881681463853.0176146-CDS-Ecto-sp13_S_contig612:4673..4788Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig612 4674..4788 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig612.16801.1prot_Ecto-sp13_S_contig612.16801.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig612 1239..4788 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig612.16801.1

>prot_Ecto-sp13_S_contig612.16801.1 ID=prot_Ecto-sp13_S_contig612.16801.1|Name=mRNA_Ecto-sp13_S_contig612.16801.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=304bp
MYSCSRDTTVRQWNRSGISALRVFEGHDLACTAMALSGDEKTLYSGSRDT
SIRAWDVQTGQCTSSAKVPRNLVTCLKCLSGESSSSVAQGGEDLKLRVWD
TRDGGLRPSMTIDGYTFFPLCLDASSDGHQILTSCKGFNGAGCETKLWDL
RSPGIPVREYTGHTQDTTACVFATSKEGGDDGSGAGKGGYGLSPSPLPSL
SAPSSRGMIATASKDGSVKIYDLADGDILVDHVEPECGGYTGLAIQRDSR
TGAPVFYASTITGGLYALRLEAKVATAAQSQTGLQEGGLRLRCVGFVRGN
PIL*
back to top

mRNA from alignment at Ecto-sp13_S_contig612:1239..4788-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig612.16801.1 ID=mRNA_Ecto-sp13_S_contig612.16801.1|Name=mRNA_Ecto-sp13_S_contig612.16801.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3550bp|location=Sequence derived from alignment at Ecto-sp13_S_contig612:1239..4788- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTACAGCTGCTCGCGAGACACTACCGTCAGGCAGTGGAATCGATCTGG GATCTCGGCGCTTCGGGTGTTTGAAGGCCACGACCTCGCCTGTACGGCGA TGGCGCTCAGCGGAGGTGGGTAGATGAAGTGGTGTGTTGACACGATAACA CAGAAATGTTGCGGGGGTGTACCGGGATGTTTGTCACTTTGTCCGCAATG ATGCAGTTGTACTCTATGGGTACGAATCAGCAGATGAATGCCGGGGCCGG CCATGAGCACAACCCACCACGGGTGGCGCAAGACACACGCAGCGAGACAC ATCGCTCGAAGGCTATTCAAGGTAGGAGAACATGCTGTAGCTTCTTTAAA GCCGTGATATCCCACTATTATCCGCCACATAGGCCAGTACAGTAGTGCCT GGTGAGGTATGTGACAAGGTGATGTGCCATCCCAATGCAAGATCTTGCCC GCTCGTCAATCCATCCTTTCGAAACTCTTCCAAGACGACGACCCGACGCC CTACGAACACTCCCTGACAGACGAGAAAACCCTCTACTCCGGATCTCGGG ACACCAGCATACGTGCATGGGACGTCCAAACGGGACAATGCACCTCCTCG GCAAAGGTGCCACGCAACTTGGTCACCTGCCTCAAGTGCCTCTCGGGGGA ATCGTCTTCTTCCGTAGCGCAAGGAGGGGAAGACTTGAAGCTCAGGGTGT GGGACACTCGAGACGGGGGGCTGAGGCCTTCGATGACCATCGACGGATAC ACCTTTTTCCCGGTGGGGTTGCCTTAACGCTGTAGCACCTGTTGACTCTG CGTGTGGGACTATTCGACGAAATAATCGGAGGACGGGGGGGTGGGGGGGG GGCATAATGCCTTGGCTGTGAAACCATTGGCCACACGTCCTCGAGAGGAA GGAGAACAAAAACTGTTTCCACAAGAGGGAAGGAGGGAGGGGGGGGGGGA GGGGGATACTGGTAGAGGTGGTGTTTCGCCAGCTTCCGATAATTCCTCCA CTGGGCCTACCTACATGATACGAATGTCCGGCTTCTCCAGTCGGTGTGGT TGTTTTGTCAGATGGATACCTCGACCCTGTAGGCAGGCACGTCAATACCT TACGGCACAGCCGCACGCCTCTTGCCTTGGTTGAGTGCGCAGCTTTGCCT CGACGCTTCGAGCGACGGTCACCAGATCCTCACGTCTTGCAAGGGCTTTA ACGGCGCTGGGTGCGAAACGAAGGTCAGCGTATGTTCCGAGAGAGTTATT GGAAAAGTTTCCATGACAGTCCACAGCTAGCTCGATAGTGCGCGGACACT CTCTTCTCTCTTCGTTGTACACTAAATGATTCGAGTCGGGACTGTCTCCG CGTGACATCCATTGAGATGGTAATTCCTTTCACTACCCTTGTTTTTTCTC AACATACCAAGGAGTACCCCGCTTGTGGGCAAAACGGAGGTGCTTGGCAT CGACTTTGGTCGTTTGACACTATGCTACCTTAGGGGGAGGTGTTTGGCAT TACGCTCGATGCAGCGCGATCCGGGCTTTGTGATCGTACCCCTTGCCAAA TGTTCAAAATCACGACGACCACTGGATCATAAGTCAGCTGACTGGACTAT TAGCCAGCCGCACACAGTCATCGTGATTTCCAACAAATGCCAGAGTCCGT CGATTAGCTGGCAAGCCACAAACTCGGAGTGTACCCCCAGGGTTGCCATT TTCCTGGGGTCAGGGCTGTCTTTCCTGAAGATCGCGTTGGATCGACGATG ACAGTGCAACCAACATTGCACCTCGAGTGTGGGACACAGAATGGCCACGA TAGCATCATTGGAGATGAGCTTCGTCCCGGCGCCGAGCAGATCTCGATGC CACCGGCACCTGCTTACCGCCTTCCTACTGTTCAATCTCTTTTGGTGCTA TCTTGCTCGCTGTGTGTCCCAAGCTGCATCGGTTTGCCATCGGCCTGGAG CTGATCTCGCATGATGCTACCTCGGACATTTTGTGTCCCAAATTGGAGGT GATGTACTTAATATCGGTGTGCTTCCTTCGATGCGTGGTTTTTGCCGAAT ACACCGCAGCAGCAGTCGATCTAGTACCGACCTTCTCTTTCCCTCGCTTG CCTTCTCCAACTACGACATGAACGAGATCGGGGCCACCTGGCGAACATGA GCCCCCACGAAATAACCACACGCGTCGCAGTAGTTTCCACACGCGCCCGC CGTATTTCCTGTGTGCGCGGCGTATTTCCAGCTTTGGGACCTGCGGAGCC CAGGAATTCCCGTGAGGGAGTACACCGGGCACACTCAGGACACCACCGCC TGCGTGTTTGCAACTTCGAAGGAAGGGGGAGATGACGGGAGCGGGGCAGG AAAGGGCGGCTATGGTTTGTCGCCCTCCCCATTGCCTTCACTGTCCGCTC CTTCCTCCCGCGGGATGATCGCTACGGCTTCGAAGGACGGGTCTGTCAAG ATCTACGACCTTGCTGACGGTGAGTGGATCTACTATCATCATCATCCGCC GATATTGCGGTGTGCGCATCGTCTACACCGTATACACTACAGAATGCGCC CGCACGTTAACCACCTCAATAGTTTTCGCCGGGGCTGATGTCCTTGGTTC CTCTTCTTGTGGGCTACAAACGTGACGGACACCGATATTTTAGTGTAGGG GATCTCGGCCGAGCTCATAAAAGGTGCTCAAGTTCCAACGCTTGATAAGA TTTTGACCGTGAGTTCGCTAACCGCTGAGTTCTTAATTGCGGGCGCTGGT TGTATTCTCGAAGAAGACAGAGCTGGTGTTTGTCTCTTGCCATGTCGCTT CCATTTCCCGGTCTTTGTTGTTCATTTGACTAGGACACGCGAGCGCTGCT GTCGGCGCAGGCTCCGAATCGTGAGGCTTACTCCGCGGCATCTTCGGTTG GCTTCCAAAGTCCCTCCCTAGCCCCCACCACCGTAACCCCCTCCTGCAGC CGGCGTTTGTGTTGGTACGAAAACCGCCAGGCCTCCTCCAAACCCGGCCG TGAGGGTGCGCACAATATGGCGTGTGGCCCGGCAAAGTGTTTGGTTGTTC CCAGCCGTGAGCAGTCGCGAAGATCATGCGAGGGAAACACTGCTTAATAC TTCATAGGTAGTACAGAAAACGTCGCTAATTCCCAAGCAACCTCGCTTCG AAAACTCCTGGGGCAGAAAGGTTGAGCGTGTAGGTCAGAGAGTCTTCGCA AACTGCAAATGCCCAATGGTTGTTGGGGGTTGTTTTCTTCACATCGACAA GCCGTGCTGCCCTTACCCTGCGCGCTTTTCGAACTACCCATCCCTTTCGA TGGCGTGTTCTCAGGAAGCATTCTCGTAGATCATGTAGAACCCGAATGTG GCGGGTACACCGGCCTTGCCATTCAGCGCGACTCGAGAACAGGGGCCCCC GTCTTCTACGCGTCAACCATCACGGGGGGGTTATACGCGTTACGGCTGGA AGCGAAAGTGGCAACGGCGGCGCAGAGCCAAACGGGGCTGCAAGAGGGGG GGCTACGGTTACGTTGCGTTGGCTTTGTGCGTGGCAACCCCATCTTGTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig612:1239..4788-

>mRNA_Ecto-sp13_S_contig612.16801.1 ID=mRNA_Ecto-sp13_S_contig612.16801.1|Name=mRNA_Ecto-sp13_S_contig612.16801.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=912bp|location=Sequence derived from alignment at Ecto-sp13_S_contig612:1239..4788- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTACAGCTGCTCGCGAGACACTACCGTCAGGCAGTGGAATCGATCTGG
GATCTCGGCGCTTCGGGTGTTTGAAGGCCACGACCTCGCCTGTACGGCGA
TGGCGCTCAGCGGAGACGAGAAAACCCTCTACTCCGGATCTCGGGACACC
AGCATACGTGCATGGGACGTCCAAACGGGACAATGCACCTCCTCGGCAAA
GGTGCCACGCAACTTGGTCACCTGCCTCAAGTGCCTCTCGGGGGAATCGT
CTTCTTCCGTAGCGCAAGGAGGGGAAGACTTGAAGCTCAGGGTGTGGGAC
ACTCGAGACGGGGGGCTGAGGCCTTCGATGACCATCGACGGATACACCTT
TTTCCCGCTTTGCCTCGACGCTTCGAGCGACGGTCACCAGATCCTCACGT
CTTGCAAGGGCTTTAACGGCGCTGGGTGCGAAACGAAGCTTTGGGACCTG
CGGAGCCCAGGAATTCCCGTGAGGGAGTACACCGGGCACACTCAGGACAC
CACCGCCTGCGTGTTTGCAACTTCGAAGGAAGGGGGAGATGACGGGAGCG
GGGCAGGAAAGGGCGGCTATGGTTTGTCGCCCTCCCCATTGCCTTCACTG
TCCGCTCCTTCCTCCCGCGGGATGATCGCTACGGCTTCGAAGGACGGGTC
TGTCAAGATCTACGACCTTGCTGACGGTGACATTCTCGTAGATCATGTAG
AACCCGAATGTGGCGGGTACACCGGCCTTGCCATTCAGCGCGACTCGAGA
ACAGGGGCCCCCGTCTTCTACGCGTCAACCATCACGGGGGGGTTATACGC
GTTACGGCTGGAAGCGAAAGTGGCAACGGCGGCGCAGAGCCAAACGGGGC
TGCAAGAGGGGGGGCTACGGTTACGTTGCGTTGGCTTTGTGCGTGGCAAC
CCCATCTTGTGA
back to top