prot_Ecto-sp13_S_contig11968.1679.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig11968.1679.1
Unique Nameprot_Ecto-sp13_S_contig11968.1679.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length249
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11968.1679.1 vs. uniprot
Match: D7FQV0_ECTSI (TPR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQV0_ECTSI)

HSP 1 Score: 375 bits (962), Expect = 1.240e-126
Identity = 218/251 (86.85%), Postives = 227/251 (90.44%), Query Frame = 0 
Query:    1 TLILCCPLGWSFQQIGSPAFTRRGRSVTNPTSSGNTKNVCEALRSTCPWPNRTKTLIRSRGLCGTDDLASEPLLALKDVLAGLVAAAFVLAADPGTVLADTAMPAASVLPSGAVVEATATSASSAEVQEVVPTIKLEGELAAQFKKVQTVPSGAK--RRRVSCKSVIKYAPGYVYGWSNRANVLIAEGDLKAAVSDYDRALQLAEGIYMPDKWIIYLNRGXXXXXXXXXXXXXXXLNQAAKLNTSKDLYTL 249
            TL+LCCPLGWSFQ IGSPAFTRRGRSVTNPTSSGNTKNVCEALRST PWPNRT T I SRGLCG D++ASEPLLALKDVLAGLVAAAFVLAADPGT LADTAMPAAS LPSG+VVEATATS +SAEVQEVVPTIKLEGELAAQFKK Q   S  +  + +     V+KYAPGYVYGWSNRANVLIAEGDLKAAVSDYDRALQLAEGIYMPDKWIIYLNR XXXXXXXXXXXXXXXLNQAAKLNTSKDLYTL
Sbjct:   34 TLVLCCPLGWSFQ-IGSPAFTRRGRSVTNPTSSGNTKNVCEALRSTSPWPNRTNTRISSRGLCGADEVASEPLLALKDVLAGLVAAAFVLAADPGTALADTAMPAASGLPSGSVVEATATSTTSAEVQEVVPTIKLEGELAAQFKKAQAAGSVQQFDKAKKLYNQVVKYAPGYVYGWSNRANVLIAEGDLKAAVSDYDRALQLAEGIYMPDKWIIYLNRXXXXXXXXXXXXXXXXLNQAAKLNTSKDLYTL 283
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BLAST of mRNA_Ecto-sp13_S_contig11968.1679.1 vs. uniprot
Match: A0A835YLD8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLD8_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.730e-13
Identity = 44/88 (50.00%), Postives = 58/88 (65.91%), Query Frame = 0 
Query:  133 TIKLEGELAAQFKKVQTVPSGAKRRRVS--CKSVIKYAPGYVYGWSNRANVLIAEGDLKAAVSDYDRALQLAE---GIYMPDKWIIYL 215
            T  + GE+A QF+K     S A   +      SVIKYAPGY+YG+SNR NV IA+GDL+AA+ DY  A++L E   GI +PD W+I+L
Sbjct:  115 TTDVRGEVADQFRKANNYGSVADFDKAFKLYSSVIKYAPGYIYGYSNRGNVQIAKGDLEAAIRDYTAAIKLCEETEGIKVPDLWLIHL 202
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11968.1679.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQV0_ECTSI1.240e-12686.85TPR domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YLD8_9STRA1.730e-1350.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 172..205
e-value: 0.0025
score: 27.1
coord: 211..244
e-value: 0.46
score: 19.5
IPR019734Tetratricopeptide repeatPFAMPF13181TPR_8coord: 175..203
e-value: 0.026
score: 14.7
coord: 213..241
e-value: 0.0075
score: 16.4
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 160..249
e-value: 3.6E-15
score: 57.9
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 165..243
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 172..244
score: 12.292

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11968contigEcto-sp13_S_contig11968:2..4516 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11968.1679.1mRNA_Ecto-sp13_S_contig11968.1679.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig11968 2..4516 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig11968.1679.1 ID=prot_Ecto-sp13_S_contig11968.1679.1|Name=mRNA_Ecto-sp13_S_contig11968.1679.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=249bp
TLILCCPLGWSFQQIGSPAFTRRGRSVTNPTSSGNTKNVCEALRSTCPWP
NRTKTLIRSRGLCGTDDLASEPLLALKDVLAGLVAAAFVLAADPGTVLAD
TAMPAASVLPSGAVVEATATSASSAEVQEVVPTIKLEGELAAQFKKVQTV
PSGAKRRRVSCKSVIKYAPGYVYGWSNRANVLIAEGDLKAAVSDYDRALQ
LAEGIYMPDKWIIYLNRGTTLMALGDDDRAMSDLNQAAKLNTSKDLYTL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR011990TPR-like_helical_dom_sf
IPR013026TPR-contain_dom