mRNA_Ecto-sp13_S_contig11968.1679.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11968.1679.1
Unique NamemRNA_Ecto-sp13_S_contig11968.1679.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11968.1679.1 vs. uniprot
Match: D7FQV0_ECTSI (TPR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQV0_ECTSI)

HSP 1 Score: 375 bits (962), Expect = 1.240e-126
Identity = 218/251 (86.85%), Postives = 227/251 (90.44%), Query Frame = 1 
Query:    1 TLILCCPLGWSFQQIGSPAFTRRGRSVTNPTSSGNTKNVCEALRSTCPWPNRTKTLIRSRGLCGTDDLASEPLLALKDVLAGLVAAAFVLAADPGTVLADTAMPAASVLPSGAVVEATATSASSAEVQEVVPTIKLEGELAAQFKKVQTVPSGAK--RRRVSCKSVIKYAPGYVYGWSNRANVLIAEGDLKAAVSDYDRALQLAEGIYMPDKWIIYLNRGXXXXXXXXXXXXXXXLNQAAKLNTSKDLYTL 747
            TL+LCCPLGWSFQ IGSPAFTRRGRSVTNPTSSGNTKNVCEALRST PWPNRT T I SRGLCG D++ASEPLLALKDVLAGLVAAAFVLAADPGT LADTAMPAAS LPSG+VVEATATS +SAEVQEVVPTIKLEGELAAQFKK Q   S  +  + +     V+KYAPGYVYGWSNRANVLIAEGDLKAAVSDYDRALQLAEGIYMPDKWIIYLNR XXXXXXXXXXXXXXXLNQAAKLNTSKDLYTL
Sbjct:   34 TLVLCCPLGWSFQ-IGSPAFTRRGRSVTNPTSSGNTKNVCEALRSTSPWPNRTNTRISSRGLCGADEVASEPLLALKDVLAGLVAAAFVLAADPGTALADTAMPAASGLPSGSVVEATATSTTSAEVQEVVPTIKLEGELAAQFKKAQAAGSVQQFDKAKKLYNQVVKYAPGYVYGWSNRANVLIAEGDLKAAVSDYDRALQLAEGIYMPDKWIIYLNRXXXXXXXXXXXXXXXXLNQAAKLNTSKDLYTL 283
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BLAST of mRNA_Ecto-sp13_S_contig11968.1679.1 vs. uniprot
Match: A0A835YLD8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLD8_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.730e-13
Identity = 44/88 (50.00%), Postives = 58/88 (65.91%), Query Frame = 1 
Query:  397 TIKLEGELAAQFKKVQTVPSGAKRRRVS--CKSVIKYAPGYVYGWSNRANVLIAEGDLKAAVSDYDRALQLAE---GIYMPDKWIIYL 645
            T  + GE+A QF+K     S A   +      SVIKYAPGY+YG+SNR NV IA+GDL+AA+ DY  A++L E   GI +PD W+I+L
Sbjct:  115 TTDVRGEVADQFRKANNYGSVADFDKAFKLYSSVIKYAPGYIYGYSNRGNVQIAKGDLEAAIRDYTAAIKLCEETEGIKVPDLWLIHL 202
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11968.1679.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQV0_ECTSI1.240e-12686.85TPR domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YLD8_9STRA1.730e-1350.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11968contigEcto-sp13_S_contig11968:2..4516 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size747
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionTPR domain-containing protein
Ec32 orthologEc-16_000850.1
Cds size747
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462634.5280113-CDS-Ecto-sp13_S_contig11968:1..401681462634.5280113-CDS-Ecto-sp13_S_contig11968:1..40Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11968 2..40 +
1681462634.5438728-CDS-Ecto-sp13_S_contig11968:881..11091681462634.5438728-CDS-Ecto-sp13_S_contig11968:881..1109Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11968 882..1109 +
1681462634.5548904-CDS-Ecto-sp13_S_contig11968:1922..21441681462634.5548904-CDS-Ecto-sp13_S_contig11968:1922..2144Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11968 1923..2144 +
1681462634.5681481-CDS-Ecto-sp13_S_contig11968:3382..35431681462634.5681481-CDS-Ecto-sp13_S_contig11968:3382..3543Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11968 3383..3543 +
1681462634.5828776-CDS-Ecto-sp13_S_contig11968:4419..45161681462634.5828776-CDS-Ecto-sp13_S_contig11968:4419..4516Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11968 4420..4516 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11968.1679.1prot_Ecto-sp13_S_contig11968.1679.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11968 2..4516 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11968.1679.1

>prot_Ecto-sp13_S_contig11968.1679.1 ID=prot_Ecto-sp13_S_contig11968.1679.1|Name=mRNA_Ecto-sp13_S_contig11968.1679.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=249bp
TLILCCPLGWSFQQIGSPAFTRRGRSVTNPTSSGNTKNVCEALRSTCPWP
NRTKTLIRSRGLCGTDDLASEPLLALKDVLAGLVAAAFVLAADPGTVLAD
TAMPAASVLPSGAVVEATATSASSAEVQEVVPTIKLEGELAAQFKKVQTV
PSGAKRRRVSCKSVIKYAPGYVYGWSNRANVLIAEGDLKAAVSDYDRALQ
LAEGIYMPDKWIIYLNRGTTLMALGDDDRAMSDLNQAAKLNTSKDLYTL
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mRNA from alignment at Ecto-sp13_S_contig11968:2..4516+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11968.1679.1 ID=mRNA_Ecto-sp13_S_contig11968.1679.1|Name=mRNA_Ecto-sp13_S_contig11968.1679.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4515bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11968:2..4516+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACGCTAATCTTGTGCTGTCCCTTGGGGTGGTCGTTCCAGGTACAGAAATG
GTGTGTAGGCCGACAAGCTTCACTGCTGTTGTCATGTTCATGTGCTTGCG
GCGCTCACATGTACCACTGCCTACTGCTGTGCCATCATACCCACGCTAGA
CTGGAAAATCGAGCATCGAAATCTTGTGGGGAGCCATTGGCTCATTGTGT
ATGCGGCAGCAGTGAGATTGTTACGTAGGTCGCCTCCGACGTGTGCCGTT
GGATTTGTAGCAGTGATCGTGATGTAGTATAGCACCCCCCCTGAATGGAG
GTCATTCCGGGAGGGATGTGATTGACCCAGAACAAAAAGGTTATCTGGAA
CCTCTAGACAAGGTAAGTTGGATGTCACCAAGATAGGCATCAACGCGTGC
CCGTTGCTGACGGGGTGGTCTTCTTCTTCGGCTTGTAAAATACGACGGAT
CCTACTATCTGCTGCTTGCGACGATCGATCTACAAAGTTGCAAGGTAAAA
GTGTCGCTGCGTATGACGTACACGAGTTGAGCTTGCCGTGCGCACGGAGT
GCGCTTTTCAGTAGGATTGCGTGCTACAACCTTGGCTTGGTTCTCTGTAT
GCTCGTCGGTGCAACAGCGTGTCACATGCAGCATAATGCTAGTTCACATA
GCTGATTGCGTTTTAGAAAACCAACAGCATGCTACCATATTGCACAAACA
TTAGTCTACAGATCGTGTCCATAGTCGGCCTTCTAGCTGGAAAATATGAC
ACACGTCCGTCCTGACCACCTCTATACCGATGCATCCACCTCTTTCCTCG
TTACAACTGACTTACTCAACAACCATCTTTCTTCCTCCTTCCTGTGAATC
GTGGACCCATTCTTTCGGGACGCCCTTCAGCAGATTGGCTCGCCAGCCTT
TACGCGGCGCGGTCGCTCTGTAACAAACCCCACCAGCAGTGGCAACACGA
AGAACGTTTGTGAGGCTTTGCGATCGACCTGTCCTTGGCCAAATCGCACC
AAAACCCTCATTCGCAGCCGCGGCCTTTGCGGCACAGACGATTTGGCCAG
CGAGCCGTTGCTCGCGCTCAAGGATGTACTTGCAGGTCTAGTCGCAGCGG
CGTTTGTGGTGAGTGTAGAGTGGTGATACTTTCCCAACACCGAAGCAGAA
ACGTTACACAACATGCACACAACACAATCGTGCTCTAGCCACAAGAATCA
TCATGATAGATGCAAGAGGAGAGCTGTAACACCTTGTAAGGTTGAAGCCG
AAACAGCTGTTTGGGGTGGTATTGCTGGGGATGTGGAGTACTTCACTACC
ACAGTAATGCGGTGCGAGTTTCCTCTGCTCAAACTAATAGTGGCGGAGAA
GGACCGGTTTTTAATTTCCTCTCTCTACAATATAAGTTCACCGTTTGTAG
ACTACACCTTGGTCTGGGGCATCAATTTGGCACGAACTTGTTACAACTAG
TTTCTAAGCCGTGAAAACAATTTCTTTGTAGATTTTGAACCCCAACAAGT
GAGTCTAGAATGCGTACCTGCGTTGGCTGTGCCGGCCGCTTGATACCTTG
CGTAGTACTCCAAGTATGTAACAGACCTGTAGAACATGTCGTGAGATGTA
TGCACCCCAGTAGGCTGTTGGAACCAACCAAGGTTGAGACTCCTCTGTGG
CTGCATGCATGCGTCGTGACGAACTATAACTGTTAGGGAACTGGCGGGAG
TGTAATTCGGTTGCCGTGGCCCTGTACGGTACCCTACGGCCTCCTTCCAC
CCTGCCCGCAAAGCCCTGGACACTCACACCCCGACTGAAACCCGAAAGCT
CTGGACTGCTGTCGTTGCGTAGCACGATGCCGCCTACGACGATGTTGTCA
TGGTCCTCCCCCACACACTCTACCTCTCTTACACCAGCGGTGCAGTACTG
ATTCTGTTTCGTCCTACCCAGCTTGCCGCCGATCCTGGGACGGTGCTAGC
GGACACGGCGATGCCGGCGGCGTCTGTTCTGCCTTCAGGCGCGGTCGTCG
AAGCTACCGCTACAAGTGCCAGCTCTGCTGAGGTGCAAGAGGTGGTGCCA
ACGATCAAGCTGGAGGGAGAGCTCGCCGCGCAGTTCAAGAAGGTGCAGAC
CGTACCGAGTGGTGCCAAAAGGCGGCGAGTGTCGTGCAAGAGTGTTAGGT
TAGGTACGGTCTGGCAAGGTGGGTTGCGCTCGACCGATGCATACCGCGGA
ATGGTTCGTGACACAAGAAGAGCGGTTGTTACACTTGGTAAAAGAGTGTT
TTGAGGGAGGGGGGGGGGGGGTTAGCCTCTCCTTCCCTACTTCCCTCCCT
CTTCATGTTTCTTTCACCAAGTGTTGATAACCAGATCCTTGCTCAAACCT
TTTCACTTGCACCTACGTCTGTCGTGATCGCTACCAGCTATCGACCCTGA
TGGGTTTGCGAATTGCGTATCCGATACGCGCTTCTCGCTAACTCAACAAG
CCTGAGGGATGCTTTTCCGCCCAATCGTCTTGAAACCTCAGGCGCAAGCG
GCGGGTAGCGTCCAGCAGTTCGACAAGGCGAAGAAGCTCTACAACCAGGC
AAGCCCTCGACCAAACGGAAACCATGCTACATGACATTATGTCTTACGCT
CACCCATTATTGATTTTACCAAGTTGCCCATCCACGATGATAGACGAACC
CACCTCGTTCCACACGCCCCTCCGTCCCACCCCATTACCGCTCACCCCAC
ACTCCCGTCTGCCAAAATGGACGACAGTGCGGTCACTGCTACAAAGAAGG
TTTCGGTTAGGTGCAGCATGCCGGTTTGGTCGCTCTCAGGGTTTGACAAA
ATGTAAATTCACAGCTGCTGGTTTCTTTCAAAGCCGAATAGCCATCAGCT
GAAGCCCGACTCTATGCCCGAAATGTGTTGGCTGAATTTCATCCCGAATT
TCGAGCCATTCTTCGGTACAAGTACATGAATTGTACGAGTTCCTTTTTTA
GCTCAAGCTCATGATCACGAGATCCAAAGCGCAGGGAGCACCAACAGGCG
ACGCGAGTCACTGAATTAAGAATCAGAACTGAATTGCCGTCGCCGGATAC
TTGGTGCATCGTATCGTCCGTTAGACCTAGCGGAGGCGAAAGAAACTCGA
CGTCGCACCAGCGCACCGCATGTACGCGATTCCCTAGTAGCGACGATCTC
CCCGTGTGGAAAATTAAAGTCCTCCAGGCGCGCCGGGCATCTTCTTGAGA
TGATCAAGTATGACGGTGAATCAGTTAGCGAGAGCCCAAGCCTTGTCCTA
GCGAGTCGAAACGGCTTTAATCACCAGGTGCGCTTGTTCGTGACTCCCCC
TTCCGCGTGCGTGAATCGACACTATTTGCGTGCCCCCTTCAAACCCACCC
ACTCGACCCACTCGGCACCTTGCTTGACCAGGTCATCAAGTATGCCCCTG
GGTACGTGTACGGGTGGAGCAACAGAGCGAACGTGCTTATCGCGGAGGGA
GACTTGAAAGCTGCCGTGTCTGACTACGACAGGGCTTTGCAACTTGCGGA
GGGAATCTATATGCCAGACAAGTGGATAATCTACCTAAACAGGTATTCTT
TTAATATCGGCAGTGTCGGGACCAGCCTCTCCGGGCGTGGCAGGTATTTC
AAAAGTACGGGGTTTCGAGCTGGGTTAAGGAGAAGCACAACCATACTTTA
TTTTTGCGCAGGCGGTGGCAGCAACTACAACGACTATAACTCCGACAACA
ATTTCTACAACAACAACAACAACAACAACAACAACAACAACGTTTTGCCC
GTGGTGCTCATCTTTCAGCATTCCAACAGGAGGTATCCTTGCGGTCCGTG
TTTTGCGTTCCGATTCGTCCCGTATTTACCGATGCTCCTAATAATTGCTT
CCGAGCATGCATTTGTCGCTCCGTACACGGTGAATTGAGACAAAAGAGCC
CCACAGAGTCACGCACACGTGCACTCGCCCAGCATGTCAATGTTCGTAGC
AACTCTGTTTCCAATATTTTGGAGGGGCGGGTGTCATGGCTGTTGGCCCT
CGTGAATTGACGCAAGGCAGCTGGCGGCGTCGTTCAATGGATGTGGCCAT
GTTTGCGGGCGCGCGCTGGACTTGAGTACGAGGAATTGAACGCTCCGGCG
TTATTGTCGTTCGCATGTCGTCGGCATTCATCCCGTAGTGCACACTGAGC
ACCACACAGAGCAAGCGTTCGAGATACCCCGGCAGCCTGCTACTCAGTAG
GTTGGCAGTGGGCGTGTATGCGTGATGAGGGAGAAACTAATTGTTTCGTA
GTTCGCCTGAGGATGAGAAAATGATGCGCAACCGTCACACACCGCAGTTG
TGAGCACACGTACGATTGCAGGTTGTGGCTCGCTTCCGCCGAGTTGCCAG
ACAATCCTATTGGTGATTCTCGCGATCGCGATCCGTCGTGGCGGTTGGCT
TTGTTTGCTTACCTGCAGGGGCACTACCCTGATGGCGTTGGGAGACGACG
ATCGGGCGATGTCGGACCTTAACCAGGCCGCCAAGCTCAACACCTCCAAG
GATCTCTACACCCTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11968:2..4516+

>mRNA_Ecto-sp13_S_contig11968.1679.1 ID=mRNA_Ecto-sp13_S_contig11968.1679.1|Name=mRNA_Ecto-sp13_S_contig11968.1679.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=747bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11968:2..4516+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACGCTAATCTTGTGCTGTCCCTTGGGGTGGTCGTTCCAGCAGATTGGCTC
GCCAGCCTTTACGCGGCGCGGTCGCTCTGTAACAAACCCCACCAGCAGTG
GCAACACGAAGAACGTTTGTGAGGCTTTGCGATCGACCTGTCCTTGGCCA
AATCGCACCAAAACCCTCATTCGCAGCCGCGGCCTTTGCGGCACAGACGA
TTTGGCCAGCGAGCCGTTGCTCGCGCTCAAGGATGTACTTGCAGGTCTAG
TCGCAGCGGCGTTTGTGCTTGCCGCCGATCCTGGGACGGTGCTAGCGGAC
ACGGCGATGCCGGCGGCGTCTGTTCTGCCTTCAGGCGCGGTCGTCGAAGC
TACCGCTACAAGTGCCAGCTCTGCTGAGGTGCAAGAGGTGGTGCCAACGA
TCAAGCTGGAGGGAGAGCTCGCCGCGCAGTTCAAGAAGGTGCAGACCGTA
CCGAGTGGTGCCAAAAGGCGGCGAGTGTCGTGCAAGAGTGTCATCAAGTA
TGCCCCTGGGTACGTGTACGGGTGGAGCAACAGAGCGAACGTGCTTATCG
CGGAGGGAGACTTGAAAGCTGCCGTGTCTGACTACGACAGGGCTTTGCAA
CTTGCGGAGGGAATCTATATGCCAGACAAGTGGATAATCTACCTAAACAG
GGGCACTACCCTGATGGCGTTGGGAGACGACGATCGGGCGATGTCGGACC
TTAACCAGGCCGCCAAGCTCAACACCTCCAAGGATCTCTACACCCTG
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