mRNA_Ecto-sp13_S_contig61046.16782.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig61046.16782.1
Unique NamemRNA_Ecto-sp13_S_contig61046.16782.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig61046.16782.1 vs. uniprot
Match: D8LQQ9_ECTSI (Hypothetical leucine rich repeat calcium binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQQ9_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 1.600e-17
Identity = 40/57 (70.18%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:    1 RGLCTNRALTSLDLAANELDEYAGQELAHSLVKNKTLTGIDLTGSNVPDEWLREHHK 171
            +GLCTNRALTSLDLAANELDEYAGQELAH                NVPDEWLREHHK
Sbjct:  872 QGLCTNRALTSLDLAANELDEYAGQELAHXXXXXXXXXXXXXXXXNVPDEWLREHHK 928
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig61046.16782.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQQ9_ECTSI1.600e-1770.18Hypothetical leucine rich repeat calcium binding p... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig61046contigEcto-sp13_S_contig61046:152..322 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score83.2
Seed ortholog evalue4.3e-14
Seed eggNOG ortholog2880.D8LQQ9
Model size171
KEGG koko:K01273,ko:K16465
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008238,GO:0016787,GO:0016805,GO:0019538,GO:0043170,GO:0044238,GO:0070011,GO:0071704,GO:0140096,GO:1901564
Exons1
EggNOG free text desc.Ca2 -binding protein (EF-Hand superfamily
EggNOG OGsCOG5126@1,KOG0028@2759,KOG4308@1,KOG4308@2759
EC3.4.13.19
Cds size171
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00537,ko01000,ko01002,ko03036,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463851.3606238-CDS-Ecto-sp13_S_contig61046:151..3221681463851.3606238-CDS-Ecto-sp13_S_contig61046:151..322Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig61046 152..322 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig61046.16782.1prot_Ecto-sp13_S_contig61046.16782.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig61046 152..322 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig61046.16782.1

>prot_Ecto-sp13_S_contig61046.16782.1 ID=prot_Ecto-sp13_S_contig61046.16782.1|Name=mRNA_Ecto-sp13_S_contig61046.16782.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=57bp
RGLCTNRALTSLDLAANELDEYAGQELAHSLVKNKTLTGIDLTGSNVPDE
WLREHHK
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mRNA from alignment at Ecto-sp13_S_contig61046:152..322+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig61046.16782.1 ID=mRNA_Ecto-sp13_S_contig61046.16782.1|Name=mRNA_Ecto-sp13_S_contig61046.16782.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=171bp|location=Sequence derived from alignment at Ecto-sp13_S_contig61046:152..322+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGGGATTGTGCACCAATCGTGCGCTGACGTCGTTAGATCTTGCCGCCAA
CGAGCTGGACGAGTACGCGGGGCAAGAGCTTGCGCACTCGCTGGTGAAGA
ACAAGACGCTCACCGGCATCGACCTAACCGGCAGCAACGTTCCGGACGAG
TGGCTGCGTGAGCACCACAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig61046:152..322+

>mRNA_Ecto-sp13_S_contig61046.16782.1 ID=mRNA_Ecto-sp13_S_contig61046.16782.1|Name=mRNA_Ecto-sp13_S_contig61046.16782.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=171bp|location=Sequence derived from alignment at Ecto-sp13_S_contig61046:152..322+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGGGATTGTGCACCAATCGTGCGCTGACGTCGTTAGATCTTGCCGCCAA
CGAGCTGGACGAGTACGCGGGGCAAGAGCTTGCGCACTCGCTGGTGAAGA
ACAAGACGCTCACCGGCATCGACCTAACCGGCAGCAACGTTCCGGACGAG
TGGCTGCGTGAGCACCACAAG
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