prot_Ecto-sp13_S_contig61046.16782.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig61046.16782.1
Unique Nameprot_Ecto-sp13_S_contig61046.16782.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length57
Homology
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BLAST of mRNA_Ecto-sp13_S_contig61046.16782.1 vs. uniprot
Match: D8LQQ9_ECTSI (Hypothetical leucine rich repeat calcium binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQQ9_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 1.600e-17
Identity = 40/57 (70.18%), Postives = 41/57 (71.93%), Query Frame = 0 
Query:    1 RGLCTNRALTSLDLAANELDEYAGQELAHSLVKNKTLTGIDLTGSNVPDEWLREHHK 57
            +GLCTNRALTSLDLAANELDEYAGQELAH                NVPDEWLREHHK
Sbjct:  872 QGLCTNRALTSLDLAANELDEYAGQELAHXXXXXXXXXXXXXXXXNVPDEWLREHHK 928
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig61046.16782.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQQ9_ECTSI1.600e-1770.18Hypothetical leucine rich repeat calcium binding p... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..55
e-value: 3.1E-9
score: 38.5
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 3..51

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig61046contigEcto-sp13_S_contig61046:152..322 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig61046.16782.1mRNA_Ecto-sp13_S_contig61046.16782.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig61046 152..322 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig61046.16782.1 ID=prot_Ecto-sp13_S_contig61046.16782.1|Name=mRNA_Ecto-sp13_S_contig61046.16782.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=57bp
RGLCTNRALTSLDLAANELDEYAGQELAHSLVKNKTLTGIDLTGSNVPDE
WLREHHK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf