mRNA_Ecto-sp13_S_contig6099.16764.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6099.16764.1
Unique NamemRNA_Ecto-sp13_S_contig6099.16764.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6099.16764.1 vs. uniprot
Match: D7FL13_ECTSI (Membrane-associated tyrosine-and threonine-specific cdc2-inhibitory kinase (Myt1 kinase) n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL13_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 2.140e-12
Identity = 39/50 (78.00%), Postives = 45/50 (90.00%), Query Frame = 2 
Query:    2 MGPAGAMAFDTMSANPVLGAPGQDVVSMTVVLLMACLKKKRRGSNLFTQQ 151
            MG +GAMAF+TMSA+PVLGAP QDVVS+ VVLLM CLK++RR SNLFTQQ
Sbjct:  802 MGTSGAMAFETMSADPVLGAPAQDVVSVAVVLLMVCLKRERRCSNLFTQQ 851
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BLAST of mRNA_Ecto-sp13_S_contig6099.16764.1 vs. uniprot
Match: A0A6H5JWE9_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWE9_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 7.520e-12
Identity = 38/49 (77.55%), Postives = 44/49 (89.80%), Query Frame = 2 
Query:    2 MGPAGAMAFDTMSANPVLGAPGQDVVSMTVVLLMACLKKKRRGSNLFTQ 148
            MG +GAMAF+TMSA+PVLGAP QDVVS+ VVLLM CLK++RR SNLFTQ
Sbjct: 1167 MGTSGAMAFETMSADPVLGAPAQDVVSVAVVLLMVCLKRERRCSNLFTQ 1215
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6099.16764.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FL13_ECTSI2.140e-1278.00Membrane-associated tyrosine-and threonine-specifi... [more]
A0A6H5JWE9_9PHAE7.520e-1277.55Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6099contigEcto-sp13_S_contig6099:1360..3343 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score79.3
Seed ortholog evalue9e-13
Seed eggNOG ortholog2880.D7FL05
Model size846
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.regulation of (1->6)-beta-D-glucan biosynthetic process
EggNOG OGsCOG0515@1,KOG1152@2759
Cds size246
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463849.7399573-UTR-Ecto-sp13_S_contig6099:1359..18241681463849.7399573-UTR-Ecto-sp13_S_contig6099:1359..1824Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6099 1360..1824 -
1681463849.752352-UTR-Ecto-sp13_S_contig6099:2251..23851681463849.752352-UTR-Ecto-sp13_S_contig6099:2251..2385Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6099 2252..2385 -
1681463849.7847462-UTR-Ecto-sp13_S_contig6099:3342..33431681463849.7847462-UTR-Ecto-sp13_S_contig6099:3342..3343Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6099 3343..3343 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463849.7628903-CDS-Ecto-sp13_S_contig6099:2385..24771681463849.7628903-CDS-Ecto-sp13_S_contig6099:2385..2477Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6099 2386..2477 -
1681463849.7739844-CDS-Ecto-sp13_S_contig6099:3188..33421681463849.7739844-CDS-Ecto-sp13_S_contig6099:3188..3342Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6099 3189..3342 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6099.16764.1prot_Ecto-sp13_S_contig6099.16764.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6099 2386..3342 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6099.16764.1

>prot_Ecto-sp13_S_contig6099.16764.1 ID=prot_Ecto-sp13_S_contig6099.16764.1|Name=mRNA_Ecto-sp13_S_contig6099.16764.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=82bp
MGPAGAMAFDTMSANPVLGAPGQDVVSMTVVLLMACLKKKRRGSNLFTQQ
EDSRLSARERQPGHQRTHGTILVVPQAGAKP*
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mRNA from alignment at Ecto-sp13_S_contig6099:1360..3343-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6099.16764.1 ID=mRNA_Ecto-sp13_S_contig6099.16764.1|Name=mRNA_Ecto-sp13_S_contig6099.16764.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1984bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6099:1360..3343- (Ectocarpus species13 EcNAP12_S_4_19m)
AATGGGCCCGGCGGGGGCAATGGCCTTCGATACCATGTCGGCGAATCCGG
TATTGGGTGCACCGGGACAAGATGTGGTGTCGATGACAGTCGTGCTGCTG
ATGGCCTGCCTAAAGAAGAAGCGGAGGGGGTCAAACCTCTTCACCCAGCA
GGAAGGTGGGAGGAGCGCAGACAGAGTCAGAGCAAGCTTAGAACACACAG
TCGTAGGGAAAGCGTCTAGGGGGAACCGGATATGCCGTTGAAGGGGCGTG
TTCGGTGAGGACTCCATGATAGACGCGCGACCGAACACGATCGCGCCGCC
CTGGACATCAATGCTTGCCCGAGACGACTATCGTTTCCGTTTCGTGCTTG
TTTCCCGGGCTAGCGCTTGTCCCAAACAACAACTGCTCGGTGCGTTGTCC
ATGGATGACAACAGCGATTTGATGCCCATCCTGTTGCCAAAAGCACGATG
CGAATTAGGATCACACATGAGCAGCGAACTCCATAGCCCCGGCAACACCC
TCAGGCAAGCGGCGCATGCCCTGCTACACACCAGTGTGTGGCAGGGCATC
ACTGCTTGCCTCAGTTTGTTTGCCAGGCTAGAGTTGTCGCTGCCCATGTA
CGAAGCCATGTCGTACCTAGCTATGGGCAAGATTGGCATGAAATCGACGA
TGTCATCCACGGCCCGCGCACCGAGGACGTTGTTGTTTTGGGATATCGCC
AGCCTGGGGAACAAGCACGAAACTGAACAAAGGTCGTTAGAGTCATATCG
CATGGAAATGTACAGCCCGTGAAAGGTGTAGCCTCCAGGAGGACATGGAC
TTACCACAGCGTTCTACGGTCGGGCTTTGTCTGATCGCGAAACATCATAC
TTGTTGATCGGTGAAGACTCTAGACTAAGCGCACGGGAGCGCCAGCCTGG
ACACCAACGCACACACGGGACCATTCTAGTTGTTCCTCAGGCTGGCGCGA
AACCCTAGCGGCGACGTGCTCGGTTCGCTGAACATGAACGACTGCAGCGA
TTTGACGCCAATTTTATTGCCGAAATCTCGGTGCGACGTGGCGTTCTACA
TGGACAACGACACCACTACAATAGCCTCCGGGACAAGCGCAGGCAAGCTG
CGCATGCCCTGCTGCGCTCTGCCATACTGCCCTAGTGCCAGTACCAGAGA
GAAGTACGCCAGCGCGTTTCCGGTCATCAACGCTGTAGAGAAAAGGGCGC
TCGGTCTTTGAGCTCGCCATGATATCCCGCCGCACTAGTCTAAACGGCTA
GCATTCTTCCCGTCCCTTGATAAGCCGGCGGCAACTCGGGCTCGATGATT
TTCGACCGTTTCGTCCTTTGCCGGTGGGCGATGTGGCGGGTGTTGCATCG
ATGACTTCTCCTGTCAGAAACCGGGCTTCTGACCCCTTTTTGACTACCTT
TCAGAAAGCCTGGTTTCTGACGGGCGGAAAGCCCGTACGCCGTTGCCACT
TTTACGACTCTAGACTGTAAAAACACCTCGGATACTGCTCAACCAATCCA
CTGCTTCTTTGTCACCTAGGTGCTCTGTCTCAAGGAGAGAGACGGGATCC
TTCTCTGCTGGTGCAGGCGAGGGTGGCTCGGTCCTCTGGCAGCTGAGGAC
GCACCCATCTACAGTAGGTGATCGATACATTGTTGCCGTTCTGAGTGAAC
AGCATTCGAAGACCGTTGCGAAAACAGATGGGCGAGTCCGTTGTGCTGCA
CATTGGCCTGTCTGGCTACATATGTGGATTCAAGAAACGGCCATCGCCAT
GTGGGGTGTGGACAAAGTTTTGTTAGGACGCCCTCGTTCTTCTAAATTAC
CCTTGAGCGGCGGGGCGCAATCGCCAGGCAGCACATTTTTCGAATATGCT
ACGCTACACCTGATACTACGACGGCTTCACGACTACAGTCGATGGTCCTC
AATGGTAGCGGTGCCCTCAATAGCGAGGTGCCCTCTATAACGGCAGCAAA
ATAGCTTGGCACGAATGCATCCCTCAATAGCGGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6099:1360..3343-

>mRNA_Ecto-sp13_S_contig6099.16764.1 ID=mRNA_Ecto-sp13_S_contig6099.16764.1|Name=mRNA_Ecto-sp13_S_contig6099.16764.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=246bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6099:1360..3343- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCCCGGCGGGGGCAATGGCCTTCGATACCATGTCGGCGAATCCGGT
ATTGGGTGCACCGGGACAAGATGTGGTGTCGATGACAGTCGTGCTGCTGA
TGGCCTGCCTAAAGAAGAAGCGGAGGGGGTCAAACCTCTTCACCCAGCAG
GAAGACTCTAGACTAAGCGCACGGGAGCGCCAGCCTGGACACCAACGCAC
ACACGGGACCATTCTAGTTGTTCCTCAGGCTGGCGCGAAACCCTAG
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