mRNA_Ecto-sp13_S_contig6096.16762.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig6096.16762.1 vs. uniprot
Match: D7FYY4_ECTSI (Origin recognition complex subunit 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYY4_ECTSI) HSP 1 Score: 548 bits (1412), Expect = 6.560e-188 Identity = 284/287 (98.95%), Postives = 285/287 (99.30%), Query Frame = 1
Query: 4 TTRKQTVLYNLFEWPSRRNARLVVVGIANTIDLPERCLPRVSSRVTSRLTFGPYTKLQLAEILQARLVEANAIGGKASSVEGKANTSVEGKAFDNGAINMAAAKVASSSGDMRMCLKYCRRAIEVCKARVESAKEDGNGDKVSWEVSVKDVHVAVREINEQAHLVAVRDSAPQERLLLVAITNEVHLGGKGVVDMDDVRTRMEGICRAHPNGPRMPNVTTILEMMSRLAAAQVLELVLSRRTPLPDVELNMTVRDVVQMLRDDEEFSRKVLPDALVSEYPTTSSLPG 864
TTRKQTVLYNLFEWPSRRNARLVVVGIANTIDLPERCLPRVSSRVTSRLTFGPYTKLQLAEILQARLVEANAIGGKAS VEGKANTSVEGKAFDNGAINMAAAKVASSSGDMRMCLKYCRRAIEVCKARVESAKEDGNGDKVSWEVSVKDVHVAVREINEQAHLVAVRDSAPQERLLLVAITNEVHLGGKGVVDMDDVRTRMEGICRAHPNGPRMPNVTTILEM+SRLAAAQVLELVLSRRTPLPDVELNMTVRDVVQMLRDDEEFSRKVLPDALVSEYP TSSLPG
Sbjct: 605 TTRKQTVLYNLFEWPSRRNARLVVVGIANTIDLPERCLPRVSSRVTSRLTFGPYTKLQLAEILQARLVEANAIGGKASPVEGKANTSVEGKAFDNGAINMAAAKVASSSGDMRMCLKYCRRAIEVCKARVESAKEDGNGDKVSWEVSVKDVHVAVREINEQAHLVAVRDSAPQERLLLVAITNEVHLGGKGVVDMDDVRTRMEGICRAHPNGPRMPNVTTILEMISRLAAAQVLELVLSRRTPLPDVELNMTVRDVVQMLRDDEEFSRKVLPDALVSEYPMTSSLPG 891
BLAST of mRNA_Ecto-sp13_S_contig6096.16762.1 vs. uniprot
Match: A0A6H5JRK8_9PHAE (Origin recognition complex subunit 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRK8_9PHAE) HSP 1 Score: 531 bits (1368), Expect = 3.130e-185 Identity = 278/287 (96.86%), Postives = 279/287 (97.21%), Query Frame = 1
Query: 4 TTRKQTVLYNLFEWPSRRNARLVVVGIANTIDLPERCLPRVSSRVTSRLTFGPYTKLQLAEILQARLVEANAIGGKASSVEGKANTSVEGKAFDNGAINMAAAKVASSSGDMRMCLKYCRRAIEVCKARVESAKEDGNGDKVSWEVSVKDVHVAVREINEQAHLVAVRDSAPQERLLLVAITNEVHLGGKGVVDMDDVRTRMEGICRAHPNGPRMPNVTTILEMMSRLAAAQVLELVLSRRTPLPDVELNMTVRDVVQMLRDDEEFSRKVLPDALVSEYPTTSSLPG 864
TTRKQTVLYNLFEWPSRRNARLVVVGIANTIDLPERCLPRVSSRVTSRLTFGPYTKLQLAEILQARLVEANAIGGKASSVEGKA FDNGAINMAAAKVASSSGDMRMCLKYCRRAIEVCKARVESAKEDGNGDKVSWEVSVKDVHVAVREINEQAHLVAVRDSAPQERLLLVAITNEVHLGGKGVVDMDDVRTRMEGICRAHPNGPRMPNVTTILEM+SRLAAAQVLELVLSRRTPLPDVELNMTVRDVVQMLRDDEEFSRKVLPDALVSEYPTTSSLPG
Sbjct: 320 TTRKQTVLYNLFEWPSRRNARLVVVGIANTIDLPERCLPRVSSRVTSRLTFGPYTKLQLAEILQARLVEANAIGGKASSVEGKA--------FDNGAINMAAAKVASSSGDMRMCLKYCRRAIEVCKARVESAKEDGNGDKVSWEVSVKDVHVAVREINEQAHLVAVRDSAPQERLLLVAITNEVHLGGKGVVDMDDVRTRMEGICRAHPNGPRMPNVTTILEMISRLAAAQVLELVLSRRTPLPDVELNMTVRDVVQMLRDDEEFSRKVLPDALVSEYPTTSSLPG 598
BLAST of mRNA_Ecto-sp13_S_contig6096.16762.1 vs. uniprot
Match: A0A834ZE13_9MAGN (Origin recognition complex subunit 1 n=1 Tax=Tetracentron sinense TaxID=13715 RepID=A0A834ZE13_9MAGN) HSP 1 Score: 150 bits (378), Expect = 3.710e-37 Identity = 92/266 (34.59%), Postives = 144/266 (54.14%), Query Frame = 1
Query: 7 TRKQTVLYNLFEWPSRRNARLVVVGIANTIDLPERCLPRVSSRV-TSRLTFGPYTKLQLAEILQARLVEANAIGGKASSVEGKANTSVEGKAFDNGAINMAAAKVASSSGDMRMCLKYCRRAIEVCKARVESAKEDGNGDKVSWEVSVKDVHVAVREINEQAHLVAVRDSAPQERLLLVAITNEVHLGGKGVVDMDDVRTRMEGICRAHPNGPRMPNVTTILEMMSRLAAAQVLELVLSRRTPLPDVELNMTVRDVVQMLRDDEEF 801
TR Q+VLYN+ +WP++ N++LVV+GIANT+DLPE+ LPR+SSR+ RL FGPY QL EI+ +RL N I AF+ AI A+ KVA+ SGD R L+ CRRA E+ R++ + N V + +V A++E+ + H+ +R S+ ++ LVA+ +E++ G G + + T + +C + NG P T+L + +L +++ R L ++LN DV L+D +E
Sbjct: 576 TRNQSVLYNILDWPTKPNSKLVVIGIANTMDLPEKLLPRISSRMGIQRLCFGPYNYQQLQEIISSRL---NGID-----------------AFEKQAIEFASRKVAAISGDARRALEICRRAAELTDYRIKKSSSFPNSASAGAFVGMAEVEAAIQEMFQAQHIQVMRSSSKLSKIFLVAMVHELYKTGMGETTFEKLATTVSCLCAS--NGEAFPGWDTLLRVGCKLGECRIILCEAGGRHRLQKLQLNFPSDDVAFALKDSKEL 819
BLAST of mRNA_Ecto-sp13_S_contig6096.16762.1 vs. uniprot
Match: A0A5A8C3P2_CAFRO (Origin recognition complex subunit 1 n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C3P2_CAFRO) HSP 1 Score: 145 bits (367), Expect = 2.050e-36 Identity = 107/288 (37.15%), Postives = 149/288 (51.74%), Query Frame = 1
Query: 7 TRKQTVLYNLFEWPSRRNARLVVVGIANTIDLPERCLPRVSSRV-TSRLTFGPYTKLQLAEILQARLVEANAIGGKASSVEGKANTSVEGKAFDNGAINMAAAKVASSSGDMRMCLKYCRRAIEVCKARVESAKEDGNGDKVSWE----------------VSVKDVHVAVREINEQAHLVAVRDSAPQERLLLVAITNEVHLGGKGVVD--MDDVRTRMEGICRAHP--NGPRMPNVTTILEMMSRLAAAQVLELVLSRRTPLPDVELNMTVRDVVQMLRDDEEFSR 807
TRKQTVLYNL +WPSRR+ARLVVVGIANT+DLPER LPRV SR+ +R+ F PYT+ Q+ +I+ RL + SV F + A+ MAA KVA+ SGD+R L CRRA E+ R + + V + DV A RE++ H A+R ER+L+VA+ +HL G D + V R+ + R+H +G ++P + EM RL ++L L S+ + P + L M DV+ LR+D S+
Sbjct: 267 TRKQTVLYNLLDWPSRRHARLVVVGIANTMDLPERMLPRVHSRLGLARVVFQPYTRDQIRDIVCDRL----------------SGLSV----FRSDAVEMAARKVAALSGDVRRALHICRRAAELAAERAQGSVAGAGAXXXXXXXXXXXXXXXXXXQDGTVRISDVQAAARELSATRHATALRGCGLWERVLVVALV--LHLRAAGASDGVLPAVHRRLCTLLRSHVGLSGAKLPTLAEAGEMAGRLGDTRLLLLDNSKSSRWPTLRLGMQPDDVIFALREDSLLSK 532
BLAST of mRNA_Ecto-sp13_S_contig6096.16762.1 vs. uniprot
Match: A0A1D6NTH7_MAIZE (Origin recognition complex subunit 1 n=1 Tax=Zea mays TaxID=4577 RepID=A0A1D6NTH7_MAIZE) HSP 1 Score: 145 bits (366), Expect = 2.840e-36 Identity = 92/270 (34.07%), Postives = 147/270 (54.44%), Query Frame = 1
Query: 7 TRKQTVLYNLFEWPSRRNARLVVVGIANTIDLPERCLPRVSSRV-TSRLTFGPYTKLQLAEILQARLVEANAIGGKASSVEGKANTSVEGKAFDNGAINMAAAKVASSSGDMRMCLKYCRRAIEVCKARV----ESAKEDGNGDKVSWEVSVKDVHVAVREINEQAHLVAVRDSAPQERLLLVAITNEVHLGGKGVVDMDDVRTRMEGICRAHPNGPRMPNVTTILEMMSRLAAAQVLELVLSRRTPLPDVELNMTVRDVVQMLRDDEEF 801
TR Q+VLYN+ +WP++ + LVV+GIANT+DLPE+ LPR+SSR+ RL FGPY QL EI+ +RL +A F+ AI A+ KVA+ SGD R L+ CRRA E RV +SA+ + +K VS+ D+ A++E+ + H+ +++ +++LVAI +E++ G G + D + T + CRAH +P T+L++ +L ++++ + L V+LN DV L++ +
Sbjct: 281 TRNQSVLYNILDWPTKPYSNLVVIGIANTMDLPEKLLPRISSRMGIQRLCFGPYNYRQLQEIITSRLKGIDA--------------------FEEQAIEFASRKVAAMSGDARRALEICRRAAEFADYRVKQSRQSAQNTVSANKGDGVVSMGDIEAAIQEVFQAPHIQVMKNCPKFGKVILVAIVHELYKSGLGEIMFDKLATTVFSWCRAHRE--LLPGYDTLLKICCKLGESKIILCEEGTKHKLQKVQLNYPSDDVTFALKESPDL 528
BLAST of mRNA_Ecto-sp13_S_contig6096.16762.1 vs. uniprot
Match: A0A2G9I858_9LAMI (Origin recognition complex subunit 1 n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9I858_9LAMI) HSP 1 Score: 143 bits (360), Expect = 3.390e-36 Identity = 89/269 (33.09%), Postives = 144/269 (53.53%), Query Frame = 1
Query: 7 TRKQTVLYNLFEWPSRRNARLVVVGIANTIDLPERCLPRVSSRV-TSRLTFGPYTKLQLAEILQARLVEANAIGGKASSVEGKANTSVEGKAFDNGAINMAAAKVASSSGDMRMCLKYCRRAIEVCKARVESAK---EDGNGDKVSWEVSVKDVHVAVREINEQAHLVAVRDSAPQERLLLVAITNEVHLGGKGVVDMDDVRTRMEGICRAHPNGPRMPNVTTILEMMSRLAAAQVLELVLSRRTPLPDVELNMTVRDVVQMLRDDEEF 801
TR Q+VLYN+ +WP++ N++L+V+GIANT+DLPE+ LPR+SSR+ RL FGPY QL EI+ +RL +A F+ AI A+ KVA+ SGD R L+ CRRA E+ R + + D G + V + DV A++E+ + H+ ++ S+ ++ L A+ +E++ G G + + + C A NG P T+L++ +L ++L +R L ++LN DV+ L++ +E
Sbjct: 163 TRTQSVLYNILDWPTKPNSKLIVIGIANTMDLPEKLLPRISSRMGIQRLCFGPYNYQQLQEIICSRLKGTDA--------------------FEKHAIEFASRKVAAVSGDARRALEICRRAAELADYRAKRSPLSTSDATGKII---VGMADVEAAIKEMFQAPHIQVIKSSSKLSKVFLAAMVHELYKTGMGETTFEKLAMAVSCFCTA--NGETFPGYDTLLKVGCKLGECRILLCEAGKRHRLQKLQLNYPSDDVIFALKESKEL 406
BLAST of mRNA_Ecto-sp13_S_contig6096.16762.1 vs. uniprot
Match: A0A1J3GN99_NOCCA (Origin recognition complex subunit 1 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3GN99_NOCCA) HSP 1 Score: 144 bits (362), Expect = 5.050e-36 Identity = 88/266 (33.08%), Postives = 139/266 (52.26%), Query Frame = 1
Query: 7 TRKQTVLYNLFEWPSRRNARLVVVGIANTIDLPERCLPRVSSRV-TSRLTFGPYTKLQLAEILQARLVEANAIGGKASSVEGKANTSVEGKAFDNGAINMAAAKVASSSGDMRMCLKYCRRAIEVCKARVESAKEDGNGDKVSWEVSVKDVHVAVREINEQAHLVAVRDSAPQERLLLVAITNEVHLGGKGVVDMDDVRTRMEGICRAHPNGPRMPNVTTILEMMSRLAAAQVLELVLSRRTPLPDVELNMTVRDVVQMLRDDEEF 801
TR Q+VLYN+ +WP++ N++L+V+GIANT+DLPE+ LPR+SSR+ RL FGPY QL EI+ RL +A F+ AI A+ KVA+ SGD R L+ CRRA EV R++ N K + V + DV A++E+ + H+ ++ + ++ L A+ +E++ G D V T + C NG P +L++ L +++ +R L ++LN DV L+D+++
Sbjct: 229 TRNQSVLYNILDWPTKPNSKLIVLGIANTMDLPEKLLPRISSRMGIQRLCFGPYNHTQLQEIISTRLKGIDA--------------------FEKQAIEFASRKVAAISGDARRALEICRRAAEVADHRLKKKDSSNNAAKKNQLVVMGDVEAAIQEMFQAPHIQVMKSVSKLSKIFLTAMVHELYKTGMAETTFDRVATTVSAFCLT--NGEAFPGWDVLLKIGCDLGECRIILCEPGQRHRLQKLQLNFPSDDVAFALKDNKDL 472
BLAST of mRNA_Ecto-sp13_S_contig6096.16762.1 vs. uniprot
Match: A0A835V842_VANPL (Origin recognition complex subunit 1 n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835V842_VANPL) HSP 1 Score: 145 bits (367), Expect = 5.610e-36 Identity = 92/273 (33.70%), Postives = 146/273 (53.48%), Query Frame = 1
Query: 7 TRKQTVLYNLFEWPSRRNARLVVVGIANTIDLPERCLPRVSSRV-TSRLTFGPYTKLQLAEILQARLVEANAIGGKASSVEGKANTSVEGKAFDNGAINMAAAKVASSSGDMRMCLKYCRRAIEVCKARVESAKEDGNGDKVSWE-------VSVKDVHVAVREINEQAHLVAVRDSAPQERLLLVAITNEVHLGGKGVVDMDDVRTRMEGICRAHPNGPRMPNVTTILEMMSRLAAAQVLELVLSRRTPLPDVELNMTVRDVVQMLRDDEEF 801
TR Q+VLYN+ +WP++ N++L+V+GIANT+DLPE+ LPR+SSR+ RL FGPY QL EI+ +RL K V F+ AI A+ KVA+ SGD R L+ CRRA EV RVE + ++ VS+ D+ A+REI + H+ ++ S+ +++L A+ +E++ G G V + + T + +C ++ P P T+L++ +L +++ L + ++LN DV L+D E
Sbjct: 387 TRNQSVLYNILDWPTKPNSKLIVIGIANTMDLPEKLLPRISSRMGIQRLCFGPYNYQQLQEIISSRL--------KGIDV------------FEEQAIEFASRKVAAMSGDARRALEICRRAAEVADFRVEQLSQLSKTTSLTKACPKEKHFVSIDDIEAAIREIFQAPHIQIMKTSSRMSKIMLAAMVHELYRSGLGEVTFEKLATTINSLCSSNREAP--PGRDTLLKVGFKLGECRIILLEEGLKHRFLKMQLNFPSEDVTFALKDCPEI 637
BLAST of mRNA_Ecto-sp13_S_contig6096.16762.1 vs. uniprot
Match: UPI000C1D0104 (origin of replication complex subunit 1B-like n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1D0104) HSP 1 Score: 145 bits (367), Expect = 1.100e-35 Identity = 94/270 (34.81%), Postives = 146/270 (54.07%), Query Frame = 1
Query: 7 TRKQTVLYNLFEWPSRRNARLVVVGIANTIDLPERCLPRVSSRV-TSRLTFGPYTKLQLAEILQARLVEANAIGGKASSVEGKANTSVEGKAFDNGAINMAAAKVASSSGDMRMCLKYCRRAIEV----CKARVESAKEDGNGDKVSWEVSVKDVHVAVREINEQAHLVAVRDSAPQERLLLVAITNEVHLGGKGVVDMDDVRTRMEGICRAHPNGPRMPNVTTILEMMSRLAAAQVLELVLSRRTPLPDVELNMTVRDVVQMLRDDEEF 801
TR Q+VLYN+ +WP++ N++L+V+GIANT+DLPE+ LPR+SSR+ RL FGPY LQL EI+ +RL +A F+ AI A+ KVA+ SGD R L+ CRRA E+ CK R+ S KV V + DV VA++E+ + H+ +R S+ ++ L A+ +E++ G G + + + C + NG P +L++ +L ++L + + L ++LN DV+ L+D EE
Sbjct: 569 TRNQSVLYNILDWPNKPNSKLIVIGIANTMDLPEKLLPRISSRMGIQRLCFGPYNYLQLQEIILSRLRGIDA--------------------FEKQAIEFASRKVAAVSGDARRALEICRRAAELADYRCK-RLPSLSNSAATGKVL--VGMADVEVAIKEMFQAPHIQVIRSSSKLSKIFLAAMVHELYKTGMGETTFEKLAMTVSCFCTS--NGETFPGYDILLKVGCKLGECRILLCEPAAKHKLQKLQLNFPSDDVIFALKDSEEL 813
BLAST of mRNA_Ecto-sp13_S_contig6096.16762.1 vs. uniprot
Match: A0A087G218_ARAAL (Origin recognition complex subunit 1 (Fragment) n=1 Tax=Arabis alpina TaxID=50452 RepID=A0A087G218_ARAAL) HSP 1 Score: 137 bits (345), Expect = 1.400e-35 Identity = 89/266 (33.46%), Postives = 139/266 (52.26%), Query Frame = 1
Query: 7 TRKQTVLYNLFEWPSRRNARLVVVGIANTIDLPERCLPRVSSRV-TSRLTFGPYTKLQLAEILQARLVEANAIGGKASSVEGKANTSVEGKAFDNGAINMAAAKVASSSGDMRMCLKYCRRAIEVCKARVESAKEDGNGDKVSWEVSVKDVHVAVREINEQAHLVAVRDSAPQERLLLVAITNEVHLGGKGVVDMDDVRTRMEGICRAHPNGPRMPNVTTILEMMSRLAAAQVLELVLSRRTPLPDVELNMTVRDVVQMLRDDEEF 801
TR Q+VLYN+ +WP++ N++L+V+GIANT+DLPE+ LPR+SSR+ RL FGPY QL EI+ RL NA F+ AI A+ KVA+ SGD R L+ CRRA EV R+++ K N V + DV A++E+ + H+ ++ + ++ L A+ +E++ G D V T + IC NG P +L++ L +++ + L ++LN DV L+D+++
Sbjct: 2 TRNQSVLYNILDWPTKPNSKLIVLGIANTMDLPEKLLPRISSRMGIQRLCFGPYNYTQLQEIISTRLNGINA--------------------FEKQAIEFASRKVAAISGDARRALEICRRAAEVADYRLKTNKTAKN-----QLVIMADVEAAIQEMFQAPHIQVMKSVSKLSKIFLTAMVHELYKTGMAETTFDRVATTVSSICLN--NGEAFPGWDILLKIGCDLGECRIILCEPGEKHRLQKLQLNFPSDDVSFALKDNKDI 240 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6096.16762.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig6096.16762.1 >prot_Ecto-sp13_S_contig6096.16762.1 ID=prot_Ecto-sp13_S_contig6096.16762.1|Name=mRNA_Ecto-sp13_S_contig6096.16762.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=289bp QTTRKQTVLYNLFEWPSRRNARLVVVGIANTIDLPERCLPRVSSRVTSRLback to top mRNA from alignment at Ecto-sp13_S_contig6096:2914..8379- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig6096.16762.1 ID=mRNA_Ecto-sp13_S_contig6096.16762.1|Name=mRNA_Ecto-sp13_S_contig6096.16762.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5466bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6096:2914..8379- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6096:2914..8379- >mRNA_Ecto-sp13_S_contig6096.16762.1 ID=mRNA_Ecto-sp13_S_contig6096.16762.1|Name=mRNA_Ecto-sp13_S_contig6096.16762.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=867bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6096:2914..8379- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |