mRNA_Ecto-sp13_S_contig6094.16758.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6094.16758.1
Unique NamemRNA_Ecto-sp13_S_contig6094.16758.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig6094.16758.1 vs. uniprot
Match: A0A6H5LB61_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LB61_9PHAE)

HSP 1 Score: 404 bits (1038), Expect = 2.520e-139
Identity = 212/218 (97.25%), Postives = 215/218 (98.62%), Query Frame = 2
Query:   29 QVPFDAQNRVLSYGIFGAVVMRAIFIGLGEATMSVFHPILLGFAGILLYSSYTLLSESEGDGDEDLSDNKLIAFASSTLDATESYDGDKFFTMVDGVRRATPLLLVLVCVELSDIVFAVDSIPAVFAVTKDPFIVYTSNIWAILNLRSLFTLLASAVEDLVYLRPAVAAVLGFVGCKIGGEFFGYDVSTELSLGIITGVLAAGVAASLILPGNKTDPT 682
            +VPFDAQNRVL+YGI GAVVMRAIFIGLGEATMSVFHPILLGFAGILLYSSYTLLSESEGDGDEDLSDNKLIAFASSTLDATESYDGDKFFTMVDGVRRATPLLLVLVCVELSDIVFAVDSIPAVFAVTKDPFIVYTSNIWAILNLRSLFTLLASAVEDLVYLRPAVAAVLGFVGCKIGGEFFGY+VSTELSL IITGVLAAGVAASLILPG KTDPT
Sbjct:  136 KVPFDAQNRVLTYGIIGAVVMRAIFIGLGEATMSVFHPILLGFAGILLYSSYTLLSESEGDGDEDLSDNKLIAFASSTLDATESYDGDKFFTMVDGVRRATPLLLVLVCVELSDIVFAVDSIPAVFAVTKDPFIVYTSNIWAILNLRSLFTLLASAVEDLVYLRPAVAAVLGFVGCKIGGEFFGYNVSTELSLEIITGVLAAGVAASLILPGEKTDPT 353          
BLAST of mRNA_Ecto-sp13_S_contig6094.16758.1 vs. uniprot
Match: D7FYT8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYT8_ECTSI)

HSP 1 Score: 369 bits (947), Expect = 7.650e-128
Identity = 193/198 (97.47%), Postives = 196/198 (98.99%), Query Frame = 2
Query:   89 MRAIFIGLGEATMSVFHPILLGFAGILLYSSYTLLSESEGDGDEDLSDNKLIAFASSTLDATESYDGDKFFTMVDGVRRATPLLLVLVCVELSDIVFAVDSIPAVFAVTKDPFIVYTSNIWAILNLRSLFTLLASAVEDLVYLRPAVAAVLGFVGCKIGGEFFGYDVSTELSLGIITGVLAAGVAASLILPGNKTDPT 682
            MRAIFIGLGEA MSVFHPILLGFAGILLYSSYTLLSESEGDGDEDLSDNKLIAFASS+LDATESYDGDKFFTMVDGVRRATPLLLVLVCVELSDIVFAVDSIPAVFAVTKDPFIVYTSNIWAILNLRSLFTLLASAVEDLVYLRPAVA VLGFVGCKIGG+FFGYDVSTELSLGIITGVLAAGVAASLILPG+KTDPT
Sbjct:    1 MRAIFIGLGEAAMSVFHPILLGFAGILLYSSYTLLSESEGDGDEDLSDNKLIAFASSSLDATESYDGDKFFTMVDGVRRATPLLLVLVCVELSDIVFAVDSIPAVFAVTKDPFIVYTSNIWAILNLRSLFTLLASAVEDLVYLRPAVAVVLGFVGCKIGGDFFGYDVSTELSLGIITGVLAAGVAASLILPGDKTDPT 198          
BLAST of mRNA_Ecto-sp13_S_contig6094.16758.1 vs. uniprot
Match: A0A835YKR2_9STRA (Integral membrane protein TerC family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKR2_9STRA)

HSP 1 Score: 269 bits (687), Expect = 5.780e-86
Identity = 137/208 (65.87%), Postives = 169/208 (81.25%), Query Frame = 2
Query:   32 VPFDAQNRVLSYGIFGAVVMRAIFIGLGEATMSVFHPILLGFAGILLYSSYTLLSESEGDGDEDLSDNKLIAFASSTLDATESYDGDKFFTMVDGVRRATPLLLVLVCVELSDIVFAVDSIPAVFAVTKDPFIVYTSNIWAILNLRSLFTLLASAVEDLVYLRPAVAAVLGFVGCKIGGEFFGYDVSTELSLGIITGVLAAGVAASLI 655
            VP   Q RVL +GI GAV++R +FI LGEA +  F P+LLGFA IL+ S+Y L +E EG G+ DL+DN+++ F+S  L AT+ YDGDKFFTMVDGVRRATPLLLVLVCVELSD+VFAVDSIPAVF  T+DPF+VYTSNI+AI+NLRSL+T+L++AV DL YLRPAVA VL FVG K+  E+FGY+V T LSLG+I+ +L  GVA SL+
Sbjct:  143 VPISYQQRVLRWGIVGAVILRGVFIALGEAALESFQPVLLGFAAILMVSAYKLFTEEEG-GEADLTDNQVVQFSSKILKATDQYDGDKFFTMVDGVRRATPLLLVLVCVELSDLVFAVDSIPAVFGCTRDPFLVYTSNIFAIVNLRSLYTVLSNAVGDLEYLRPAVAGVLAFVGAKLAAEYFGYEVDTLLSLGVISTLLGGGVALSLL 349          
BLAST of mRNA_Ecto-sp13_S_contig6094.16758.1 vs. uniprot
Match: A0A835YPV1_9STRA (Integral membrane protein TerC family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPV1_9STRA)

HSP 1 Score: 256 bits (654), Expect = 7.680e-82
Identity = 138/208 (66.35%), Postives = 165/208 (79.33%), Query Frame = 2
Query:   32 VPFDAQNRVLSYGIFGAVVMRAIFIGLGEATMSVFHPILLGFAGILLYSSYTLLSESEGDGDED-LSDNKLIAFASSTLDATESYDGDKFFTMVDGVRRATPLLLVLVCVELSDIVFAVDSIPAVFAVTKDPFIVYTSNIWAILNLRSLFTLLASAVEDLVYLRPAVAAVLGFVGCKIGGEFFGYDVSTELSLGIITGVLAAGVAASL 652
            VP   Q RVL +GI GAV++R IF+ LG+A +  F P+LL FAGILL SSY LL+E  GDG+E+ L +NK++  +   L ATE YDGD+FFTMVDG+RRATPLLLVLVCVE SD+VFAVDSIPAVF VTKDP IVY+SNI+AILNLRSL+T+L++AV DLVYLRPAVA VL FVG K+G E+F   V T LSLGII+ +LA GV  SL
Sbjct:   74 VPVAYQGRVLQWGIIGAVILRGIFVALGQAALESFQPVLLIFAGILLVSSYKLLTEG-GDGEEESLHNNKIVQVSKRLLRATEEYDGDRFFTMVDGMRRATPLLLVLVCVEASDLVFAVDSIPAVFGVTKDPLIVYSSNIFAILNLRSLYTVLSTAVGDLVYLRPAVALVLAFVGLKLGAEYFSVTVDTVLSLGIISTILAGGVGLSL 280          
BLAST of mRNA_Ecto-sp13_S_contig6094.16758.1 vs. uniprot
Match: A0A7S2V8N4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V8N4_9STRA)

HSP 1 Score: 246 bits (627), Expect = 9.320e-77
Identity = 125/212 (58.96%), Postives = 164/212 (77.36%), Query Frame = 2
Query:   29 QVPFDAQNRVLSYGIFGAVVMRAIFIGLGEATMSVFHPILLGFAGILLYSSYTLLSE---SEGDGDEDLSDNKLIAFASSTLDATESYDGDKFFTMVDGVRRATPLLLVLVCVELSDIVFAVDSIPAVFAVTKDPFIVYTSNIWAILNLRSLFTLLASAVEDLVYLRPAVAAVLGFVGCKIGGEFFGYDVSTELSLGIITGVLAAGVAASLI 655
            QVP   +N+VL++GIFGA+++R I IG+G   + +F PI L FA +L YSSY +L+E    EG+ +EDL DN +I  AS  L  ++ YDG KFFT+VDGV+ ATPLLL LVCVELSDIVFAVDS+PAVF VTKDPFIVYTSNI+AIL LRSL+T+L+ AV +L YL+PAV  VLGF+G K+G E++GY++ST +SLG++  +L  GV  S++
Sbjct:  157 QVPKCYENQVLNWGIFGALLLRGIMIGIGVEAVELFQPIFLVFAAVLAYSSYKILAEWVTGEGEEEEDLEDNAIIKLASKVLTVSDEYDGGKFFTVVDGVKVATPLLLCLVCVELSDIVFAVDSVPAVFGVTKDPFIVYTSNIFAILGLRSLYTVLSKAVSELDYLQPAVGIVLGFIGSKLGLEYYGYEISTGVSLGVVAALLGGGVGLSVL 368          
BLAST of mRNA_Ecto-sp13_S_contig6094.16758.1 vs. uniprot
Match: A0A7R9W7A1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W7A1_9STRA)

HSP 1 Score: 241 bits (616), Expect = 1.420e-76
Identity = 116/215 (53.95%), Postives = 166/215 (77.21%), Query Frame = 2
Query:   32 VPFDAQNRVLSYGIFGAVVMRAIFIGLGEATMSVFHPILLGFAGILLYSSYTLLSESEGDGDEDLSDNKLIAFASSTLDATESYDGDKFFTMVDGVRRATPLLLVLVCVELSDIVFAVDSIPAVFAVTKDPFIVYTSNIWAILNLRSLFTLLASAVEDLVYLRPAVAAVLGFVGCKIGGEFFGYDVSTELSLGIITGVLAAGVAASLILPGNKTD 676
            VP  AQ+RVL++GI+GAVVMRA+ IGLG A +  FH ILL FAGIL+YSS  +L   EG+ +ED+S+N+++ F+ + +D+ + +DGD+FFT VDGV++ATPL + ++ VELSD+VFAVDSIPAVF VT++P +V+TSN++AI+ LRSL+T+L+ A  DL YL PAVA VLGF+G K+  E+FGY ++TE++L ++  +L  GV  SL   G + +
Sbjct:   43 VPLKAQDRVLNWGIYGAVVMRAVMIGLGAAALENFHAILLVFAGILVYSSVKVLFGGEGEEEEDMSENQIVKFSKNLIDSVDQFDGDRFFTFVDGVKKATPLFICMIAVELSDVVFAVDSIPAVFGVTENPLVVFTSNMFAIMGLRSLYTILSKAASDLEYLEPAVAIVLGFIGGKMIAEYFGYKLATEIALAVVVTLLGGGVGLSLYAKGQREE 257          
BLAST of mRNA_Ecto-sp13_S_contig6094.16758.1 vs. uniprot
Match: W7U074_9STRA (Integral membrane protein TerC n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7U074_9STRA)

HSP 1 Score: 244 bits (623), Expect = 8.090e-76
Identity = 128/212 (60.38%), Postives = 166/212 (78.30%), Query Frame = 2
Query:   29 QVPFDAQNRVLSYGIFGAVVMRAIFIGLGEATMSVFHPILLGFAGILLYSSYTLLSESEGDG-DEDLSDNKLIAFASSTLDATESYDGDKFFTMVDGVRR-ATPLLLVLVCVELSDIVFAVDSIPAVFAVTKDPFIVYTSNIWAILNLRSLFTLLASAVEDLVYLRPAVAAVLGFVGCKIGGEFFGYDVSTELSLGIITGVLAAGVAASLIL 658
            +VP D Q RVLS+GIFGA+ MRA+ +  G   +  F  +LL FAGIL+++S  LL+E EG+G +EDL+DN+++ FA S +   ++YDG  FFT V G  R ATPLLLVL+CVELSD+VFAVDS+PAVF VTKDPFIVYTSNI+AIL LRSL+T+LA+A+ DL YL+PAVA +LG VG K+G E+FG++VS  +SLG+IT +L +GV ASL L
Sbjct:  183 KVPTDFQGRVLSWGIFGAMAMRAVMVFAGVEAIENFRVVLLAFAGILIFTSVKLLAEDEGEGGEEDLADNQIVKFARSLITTVDTYDGPNFFTEVPGQGRVATPLLLVLICVELSDVVFAVDSVPAVFGVTKDPFIVYTSNIFAILGLRSLYTVLANAMVDLPYLKPAVALILGLVGLKLGAEYFGFEVSNAVSLGVITSLLGSGVWASLYL 394          
BLAST of mRNA_Ecto-sp13_S_contig6094.16758.1 vs. uniprot
Match: A0A096PAW2_OSTTA (Integral membrane protein TerC,riboswitch-linked n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A096PAW2_OSTTA)

HSP 1 Score: 239 bits (611), Expect = 1.440e-75
Identity = 123/216 (56.94%), Postives = 164/216 (75.93%), Query Frame = 2
Query:   29 QVPFDAQNRVLSYGIFGAVVMRAIFIGLGEATMSVFHPILLGFAGILLYSSYTLLSESEGDGDEDLSDNKLIAFASSTLDATESYDGDKFFTMVDGVRRATPLLLVLVCVELSDIVFAVDSIPAVFAVTKDPFIVYTSNIWAILNLRSLFTLLASAVEDLVYLRPAVAAVLGFVGCKIGGEFFGYDVSTELSLGIITGVLAAGVAASLILPGNKTD 676
            QVP   Q  VL+YGIFGA++MRA+ I  G   +  F PILL FAGIL++SSY L+S+ + D +ED++DN ++ F S   D ++ YDGD FFT+ +GV+ ATPLLLVL  VE+SD+VFAVDSIPAVF VTKDPFIVYTSN++AIL+LR L+TL+++AV +L YL+ AVA VLGF+G K+  E+ G ++ TELSL ++  +L+ GVAASL LP +  D
Sbjct:   64 QVPPARQKVVLNYGIFGALIMRAVMIVAGVELIENFKPILLVFAGILIFSSYKLISQGDSDEEEDMADNAVVKFCSKLFDVSDDYDGDNFFTVQNGVKMATPLLLVLAVVEISDVVFAVDSIPAVFGVTKDPFIVYTSNLFAILSLRQLYTLISTAVGELKYLQTAVALVLGFIGSKMVVEYTGVEIPTELSLAVVVTLLSGGVAASLYLPDDSKD 279          
BLAST of mRNA_Ecto-sp13_S_contig6094.16758.1 vs. uniprot
Match: A4S7T9_OSTLU (Uncharacterized protein n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4S7T9_OSTLU)

HSP 1 Score: 234 bits (597), Expect = 2.000e-73
Identity = 122/211 (57.82%), Postives = 161/211 (76.30%), Query Frame = 2
Query:   29 QVPFDAQNRVLSYGIFGAVVMRAIFIGLGEATMSVFHPILLGFAGILLYSSYTLLSESEGDGDEDLSDNKLIAFASSTLDATESYDGDKFFTMVDGVRRATPLLLVLVCVELSDIVFAVDSIPAVFAVTKDPFIVYTSNIWAILNLRSLFTLLASAVEDLVYLRPAVAAVLGFVGCKIGGEFFGYDVSTELSLGIITGVLAAGVAASLILP 661
            +VP + Q RVL+YGI GA+VMRA+ +G G   +  F PILL FAGIL++SSY LL+E E + +ED+ DN ++ F  + L+ +E YDGD FFT+ +GV+ ATPLLLVL  VE+SD+VFAVDSIPAVF VTKDPFIVYTSN++AIL+LR L+TL++ AV +L YL+ AVA VLGF+G K+  E+ G +V TE SL ++  +L  GV ASL+LP
Sbjct:   66 KVPPERQTRVLNYGIVGALVMRAVMVGAGVELIENFQPILLVFAGILIFSSYKLLAEGEEE-EEDMGDNAIVKFVGNFLEVSEDYDGDNFFTVQNGVKMATPLLLVLAVVEISDVVFAVDSIPAVFGVTKDPFIVYTSNLFAILSLRQLYTLISKAVGELKYLQTAVALVLGFIGAKMIVEYAGVEVPTEASLAVVVTMLGGGVGASLMLP 275          
BLAST of mRNA_Ecto-sp13_S_contig6094.16758.1 vs. uniprot
Match: A0A1Y1IHD0_KLENI (Integral membrane protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IHD0_KLENI)

HSP 1 Score: 238 bits (607), Expect = 6.440e-73
Identity = 128/216 (59.26%), Postives = 162/216 (75.00%), Query Frame = 2
Query:   29 QVPFDAQNRVLSYGIFGAVVMRAIFIGLGEATMSVFHPILLGFAGILLYSSYTLLSESEGDGDEDLSDNKLIAFASSTLDATESYDGDKFFTMVDGVRRATPLLLVLVCVELSDIVFAVDSIPAVFAVTKDPFIVYTSNIWAILNLRSLFTLLASAVEDLVYLRPAVAAVLGFVGCKIGGEFFGYDVSTELSLGIITGVLAAGVAASLILPGNKTD 676
            QVP D QNRVLS+GI GAVV RA+ IGLG AT+  F  + L FAGILL+SS+ LL + + D DEDLSDN ++   S  +++T+ YDG+ FFT+VDGV+RATPLLL L  VELSDI FAVDSIPAVF VT DPFIV++SNI+AI+ LRSL+TL+A  ++DL +L+P++A VLGFVG K+  EF G  V TE SL ++ GVL +G+  SL  P  K D
Sbjct:  229 QVPLDYQNRVLSWGIAGAVVFRALLIGLGAATVQEFTAVNLVFAGILLFSSFKLL-QGDDDEDEDLSDNYIVKTCSKLINSTDYYDGNNFFTVVDGVKRATPLLLTLAVVELSDIAFAVDSIPAVFGVTHDPFIVFSSNIFAIICLRSLYTLVAGVMKDLRFLQPSIAIVLGFVGAKLIAEFAGLQVPTESSLAVVIGVLGSGIFLSLKFPEEKED 443          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6094.16758.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LB61_9PHAE2.520e-13997.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYT8_ECTSI7.650e-12897.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YKR2_9STRA5.780e-8665.87Integral membrane protein TerC family-domain-conta... [more]
A0A835YPV1_9STRA7.680e-8266.35Integral membrane protein TerC family-domain-conta... [more]
A0A7S2V8N4_9STRA9.320e-7758.96Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7R9W7A1_9STRA1.420e-7653.95Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
W7U074_9STRA8.090e-7660.38Integral membrane protein TerC n=3 Tax=Monodopsida... [more]
A0A096PAW2_OSTTA1.440e-7556.94Integral membrane protein TerC,riboswitch-linked n... [more]
A4S7T9_OSTLU2.000e-7357.82Uncharacterized protein n=1 Tax=Ostreococcus lucim... [more]
A0A1Y1IHD0_KLENI6.440e-7359.26Integral membrane protein n=1 Tax=Klebsormidium ni... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6094contigEcto-sp13_S_contig6094:2020..4069 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score370.5
Seed ortholog evalue4.8e-100
Seed eggNOG ortholog2880.D7FYT8
Model size765
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.membrane protein TERC
EggNOG OGs2QQNF@2759,COG0861@1
Ec32 ortholog descriptionIntegral membrane protein TerC, riboswitch-linked
Ec32 orthologEc-19_002470.1
Cds size597
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463849.2217338-UTR-Ecto-sp13_S_contig6094:2019..21071681463849.2217338-UTR-Ecto-sp13_S_contig6094:2019..2107Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6094 2020..2107 +
1681463849.267442-UTR-Ecto-sp13_S_contig6094:3989..40691681463849.267442-UTR-Ecto-sp13_S_contig6094:3989..4069Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6094 3990..4069 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463849.2325988-CDS-Ecto-sp13_S_contig6094:2107..23261681463849.2325988-CDS-Ecto-sp13_S_contig6094:2107..2326Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6094 2108..2326 +
1681463849.2418134-CDS-Ecto-sp13_S_contig6094:3322..34331681463849.2418134-CDS-Ecto-sp13_S_contig6094:3322..3433Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6094 3323..3433 +
1681463849.2509878-CDS-Ecto-sp13_S_contig6094:3722..39891681463849.2509878-CDS-Ecto-sp13_S_contig6094:3722..3989Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6094 3723..3989 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6094.16758.1prot_Ecto-sp13_S_contig6094.16758.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6094 2108..3989 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6094.16758.1

>prot_Ecto-sp13_S_contig6094.16758.1 ID=prot_Ecto-sp13_S_contig6094.16758.1|Name=mRNA_Ecto-sp13_S_contig6094.16758.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=199bp
MRAIFIGLGEATMSVFHPILLGFAGILLYSSYTLLSESEGDGDEDLSDNK
LIAFASSTLDATESYDGDKFFTMVDGVRRATPLLLVLVCVELSDIVFAVD
SIPAVFAVTKDPFIVYTSNIWAILNLRSLFTLLASAVEDLVYLRPAVAAV
LGFVGCKIGGEFFGYDVSTELSLGIITGVLAAGVAASLILPGNKTDPT*
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mRNA from alignment at Ecto-sp13_S_contig6094:2020..4069+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6094.16758.1 ID=mRNA_Ecto-sp13_S_contig6094.16758.1|Name=mRNA_Ecto-sp13_S_contig6094.16758.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2050bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6094:2020..4069+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGACGTCCCTACCGCTGTTGTCCTCCTGCAGGTGCCGTTTGACGCCCAAA ATCGTGTCCTCTCGTATGGTATTTTTGGGGCAGTGGTGATGCGAGCCATT TTCATTGGTCTTGGCGAGGCGACCATGAGCGTGTTTCATCCTATCCTCCT GGGATTCGCGGGGATACTTCTTTACTCCTCCTACACGTTGTTGTCCGAGA GTGAGGGCGACGGGGACGAAGATTTGAGCGACAACAAGCTCATTGCCTTT GCCTCCTCCACCCTTGATGCTACAGAGTCGTACGATGGGGACAAGTTCTT CACCATGGTAAGTGAGGTAGGTCACACAACTTGCTGAGTTCCGTATAATG TGGACTCGCAGGTCTCCACAAGTATCCAACTTCGGCTTATTATTAACGCT TGACCATTTCACGGAATATTTCACGCTTTCTTTCACGAAACGGTGAAAAG AAGACCCGACTCTTTCCGCTTGCTCGAATCATTATGTCATAACAAAACCC CGCTCCCTTCAGGTGAATACACGCTTTACTGGACATACAACAGGTTGACT TGGTTTGCTCACAATAGGCAGCGATAATTTCACGAAGAGCAGCACCCGAC ACAAAGGACAGCATGCTTGTGAAGACCCCGTCCACCCGGCTTGCTGGTTT CAGCTACAGGCCCAGGGAAGAATGTCGCAACGCGGGTTTTGCTCGCGATT TTTTCCCGTTGGTGCTGGTTGGCCGCTGATTTTTCATCGTTGCGACCCAC TGATTTGACCACGACCTGTCGAAAGGTAGACGAGCTCAAAACACGCTTGC GTGAAATTTTCCGTGATTTTTCTTGCATTCATAATATCCCTGATACATTC AACGAATTACGGCTTTCTGATGGGTGCGTCGTGAGTGACGAGGGGGATCG CATGGCCTTGAAAACTCAGCATCCATCCATGCAGCGAATTGTCGACTGCA GCCAATAGTTGTTCCGTTCCCGCGCTGCTGCCTCGGCGAAGTATTTCCCA TGCCTCAGATGGAATACACTGATGACTACTGCCTCCAGTTTGGAATGAAT GGCAGCGTAGTTGCCGTCGGCGTAGCATCACAGCAGCAGCAATGGTTCGT TCTCTAAAACGACGACCGCACGAAATTTCATGTCTACATTGGTGGTGGAG GAGGTACCTTCTTGAATACCTCTGCACGCCCCTGAAATTGCGCTTAGCTT GCATTGGTGCTTGTGAGGACTGGTCCCTCTCGTGTCCACACATGAGATAT ATGTAGCGCGCCCACGACAGCTTACATGGGGCATGCCACCGTCTCCGTAT CAGGTTGATGGCGTTCGTCGAGCGACCCCACTCCTCCTGGTGCTGGTGTG CGTCGAACTAAGTGACATCGTCTTTGCTGTGGATTCAATTCCAGCGGTGT TCGCTGTGACGAAGGTACGGCGCGTTTTGCCTCACCTGGTTTTCTGTGCC GTACTCTCGGCGTGTCGAAACTACTGCTGTCTTTGCGCGAGGTTGCTGTC TTTGCTCGAGGCACTCTTCATCCCCGGTGGGATGTTCTTTGGCGTATGCT TCGTAAGTTTTGGAATGTTGTCAAGAATAACGGATCATAGACTTCATGAT GTAACCGCACATGGTCGCTAGTTTGGTTGCAGTTCCCTAGTGGACACCCC ACCTACGTGGACACTCGACCTTCGCCCTTGCGCCACTCGTGTTTGGTGTG CAGGACCCGTTCATCGTCTACACGTCCAATATATGGGCAATTCTCAACCT GAGAAGCTTGTTCACGCTGCTAGCCAGCGCCGTTGAGGATTTGGTGTATC TCCGCCCCGCTGTGGCCGCCGTATTGGGCTTCGTAGGCTGCAAAATCGGG GGTGAATTCTTTGGATACGATGTATCAACCGAGTTGTCTTTGGGAATCAT CACGGGTGTGCTGGCGGCCGGAGTAGCAGCATCATTAATTTTGCCTGGGA ACAAAACCGATCCCACGTAGAAGGAGGTGCATAACCTCGAAAATGTACTT GAAGTAATCGCTTCAACGCTTAAACCATGAGTAACAATTTTTAATACACG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6094:2020..4069+

>mRNA_Ecto-sp13_S_contig6094.16758.1 ID=mRNA_Ecto-sp13_S_contig6094.16758.1|Name=mRNA_Ecto-sp13_S_contig6094.16758.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=597bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6094:2020..4069+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGAGCCATTTTCATTGGTCTTGGCGAGGCGACCATGAGCGTGTTTCA
TCCTATCCTCCTGGGATTCGCGGGGATACTTCTTTACTCCTCCTACACGT
TGTTGTCCGAGAGTGAGGGCGACGGGGACGAAGATTTGAGCGACAACAAG
CTCATTGCCTTTGCCTCCTCCACCCTTGATGCTACAGAGTCGTACGATGG
GGACAAGTTCTTCACCATGGTTGATGGCGTTCGTCGAGCGACCCCACTCC
TCCTGGTGCTGGTGTGCGTCGAACTAAGTGACATCGTCTTTGCTGTGGAT
TCAATTCCAGCGGTGTTCGCTGTGACGAAGGACCCGTTCATCGTCTACAC
GTCCAATATATGGGCAATTCTCAACCTGAGAAGCTTGTTCACGCTGCTAG
CCAGCGCCGTTGAGGATTTGGTGTATCTCCGCCCCGCTGTGGCCGCCGTA
TTGGGCTTCGTAGGCTGCAAAATCGGGGGTGAATTCTTTGGATACGATGT
ATCAACCGAGTTGTCTTTGGGAATCATCACGGGTGTGCTGGCGGCCGGAG
TAGCAGCATCATTAATTTTGCCTGGGAACAAAACCGATCCCACGTAG
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